FG536232

EST Overview
NameFG536232
Unique NameFG536232
TypeEST
OrganismPisum sativum (pea)
Sequence length417
Libraries
Library NameType
LIBEST_023215 MeriZ Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of FG536232 vs. TrEMBL
Match: C6SZT2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.063e-13
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    2 GQIIEVKVICDHKTGESKEYGFVRFNSETAAATARKELHGKMAD 133
            G+IIEVKVICDH TG+S+ YGFVRF SET AA ARKE++G++ D
Sbjct:   82 GEIIEVKVICDHVTGKSRGYGFVRFVSETTAAAARKEMNGQILD 125          

HSP 2 Score: 29.6462 bits (65), Expect = 8.063e-13
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  124 DGRRIRVGYAHKG 162
            DGRRIRV YAHKG
Sbjct:  125 DGRRIRVSYAHKG 137          
BLAST of FG536232 vs. TrEMBL
Match: B4UWA5_ARAHY (Putative uncharacterized protein OS=Arachis hypogaea PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.820e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    2 GQIIEVKVICDHKTGESKEYGFVRFNSETAAATARKELHGKMAD 133
            G++IEVKVICDH TG+SK YGFVRF +ET+AAT RKE+H K+ D
Sbjct:   56 GELIEVKVICDHVTGKSKGYGFVRFTTETSAATGRKEMHKKIID 99          

HSP 2 Score: 26.1794 bits (56), Expect = 1.820e-12
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  124 DGRRIRVGYAHK 159
            DGRRIRV YAHK
Sbjct:   99 DGRRIRVCYAHK 110          
BLAST of FG536232 vs. TrEMBL
Match: D7T2D1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_94.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00038128001 PE=4 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.729e-8
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 2
Query:    2 GQIIEVKVICDHKTGESKEYGFVRFNSETAAATARKELHGKMAD 133
            G+IIEVKVICDH +G+SK YGFV+F S+  A  A KE+ G+  D
Sbjct:   53 GEIIEVKVICDHVSGKSKGYGFVQFTSDDDAHIALKEMDGQSLD 96          

HSP 2 Score: 26.9498 bits (58), Expect = 1.729e-8
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  124 DGRRIRVGYAHKG 162
            DGR IRV YAHKG
Sbjct:   96 DGRNIRVTYAHKG 108          
BLAST of FG536232 vs. TrEMBL
Match: B9T4D4_RICCO (Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0390190 PE=4 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.119e-7
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 2
Query:    8 IIEVKVICDHKTGESKEYGFVRFNSETAAATARKELHGKMAD 133
            ++ VKVICDH  G+S+ YGFV+F SE+AA+ A KE++G++ D
Sbjct:   25 VLAVKVICDHVNGKSEGYGFVKFTSESAASKALKEMNGQLLD 66          

HSP 2 Score: 23.0978 bits (48), Expect = 4.119e-7
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  124 DGRRIRVGYAHK 159
            DGR IRV YAH+
Sbjct:   66 DGRNIRVCYAHR 77          
BLAST of FG536232 vs. TrEMBL
Match: D7MWV6_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_359421 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.458e-7
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 2
Query:    2 GQIIEVKVICDHKTGESKEYGFVRFNSETAAATARKELHGKMAD 133
            G++IEVKVICDHK+G+SK YGFV F+SE AAA+A   ++ ++ +
Sbjct:   50 GEVIEVKVICDHKSGKSKGYGFVLFDSEEAAASALASMNNQLLE 93          
The following BLAST results are available for this feature:
BLAST of FG536232 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
C6SZT2_SOYBN8.063e-1370.45Putative uncharacterized protein OS=Glycine max PE... [more]
B4UWA5_ARAHY1.820e-1270.45Putative uncharacterized protein OS=Arachis hypoga... [more]
D7T2D1_VITVI1.729e-859.09Whole genome shotgun sequence of line PN40024, sca... [more]
B9T4D4_RICCO4.119e-754.76Glycine-rich RNA-binding protein, putative OS=Rici... [more]
D7MWV6_ARALY5.458e-756.82Putative uncharacterized protein OS=Arabidopsis ly... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 1..44
score: 8.2
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 1..41
score: 9
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 1..44
score: 2.8
NoneNo IPR availablePANTHERPTHR10432RNA-BINDING PROTEINcoord: 1..44
score: 6.6
NoneNo IPR availablePANTHERPTHR10432:SF32RNA-BINDING GLYCINE-RICH PROTEIN-RELATEDcoord: 1..44
score: 6.6
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 1..42
score: 2.9

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG536232 ID=FG536232; Name=FG536232; organism=Pisum sativum; type=EST; length=417bp
TGGGCAAATCATTGAAGTTAAAGTTATATGTGATCACAAGACTGGGGAAT
CAAAAGAGTACGGATTTGTTAGGTTCAATTCTGAAACTGCAGCTGCCACA
GCTCGCAAAGAATTGCACGGAAAGATGGCAGACGCATTCGAGTGGGTTAT
GCGCACAAAGGGTGACTGCCAAGCTTATCAAACAATTTCAATCTGTAATT
TGATACTCTGATTTTGTTTTCGTAGTATTTTTTATTTTTTTTGCCAACAG
ATGCAAGTTTACTTTTTTTTAGTCTCTCTTGTGAAGGCATGATTCCAAAT
CATAGAGAATAATCTCTCTTGCAACTAGGTTTATGTAGTTCTATCTAATT
TAACATAGGAAATTTCTGTATTTTAACAGAAAATACACTACTGAAAATAT
ATTTTACTGGATTTATG
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf