FG530158

EST Overview


Name	FG530158
Unique Name	FG530158
Type	EST
Organism	Pisum sativum (pea)
Sequence length	562

Libraries


Library Name	Type
LIBEST_023217 MeriP Pisum sativum Shoot apical meristem ESTs	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
KEGG analysis for Pisum sativum unigene v1	2011-01-05
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of FG530158 vs. TrEMBL
Match: B9FGG6_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_15692 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.281e-18
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C IC DR KEVVITKCYHLFCN CIQK  G+RQR+CP C   FGAND+KP+Y+
Sbjct:  832 CGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIYI 884

[Close]

BLAST of FG530158 vs. TrEMBL
Match: B8Q8A6_ORYSI (SKIP interacting protein 20 OS=Oryza sativa subsp. indica GN=SIP20 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.281e-18
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C IC DR KEVVITKCYHLFCN CIQK  G+RQR+CP C   FGAND+KP+Y+
Sbjct:  288 CGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIYI 340

[Close]

BLAST of FG530158 vs. TrEMBL
Match: D7LBU2_ARALY (Histone mono-ubiquitination 1 OS=Arabidopsis lyrata subsp. lyrata GN=HUB1 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.596e-18
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C  C DR KEVVITKCYHLFCN C+QK+ G+RQ+KCP C A FG NDIKP+Y+
Sbjct:  826 CKACNDRPKEVVITKCYHLFCNPCVQKLTGTRQKKCPTCSASFGPNDIKPIYI 878

[Close]

BLAST of FG530158 vs. TrEMBL
Match: C5Z8U2_SORBI (Putative uncharacterized protein Sb10g028660 OS=Sorghum bicolor GN=Sb10g028660 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.309e-18
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C IC DR KEVVI KCYHLFCN CIQK  GSRQ++CP CG  FG ND+KP+Y+
Sbjct:  180 CGICHDRQKEVVIAKCYHLFCNQCIQKSLGSRQKRCPSCGLSFGVNDVKPIYI 232

[Close]

BLAST of FG530158 vs. TrEMBL
Match: D7SLV1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018223001 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.378e-16
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C IC +R KEVVITKCYHLFCN C+Q+I  +R RKCP C A FG ND+KPVY+
Sbjct:  826 CGICHERPKEVVITKCYHLFCNPCVQRIIEARNRKCPVCSASFGPNDVKPVYI 878

[Close]

BLAST of FG530158 vs. TrEMBL
Match: B9GP99_POPTR (Histone ubiquitination proteins group OS=Populus trichocarpa GN=HUPA902 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.167e-15
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            CSIC DR KEVVITKCYHLFCN+C+Q+I  SR RKCP C   FG ND++ VY+
Sbjct:  825 CSICLDRPKEVVITKCYHLFCNTCVQRILESRHRKCPVCSMSFGHNDVRLVYI 877

[Close]

BLAST of FG530158 vs. TrEMBL
Match: A9RK65_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_115788 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.290e-14
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            CS+C+DR+KEVVITKCYHLFC+ CIQ+    R RKCP CG  FG ND++ VY+
Sbjct:  832 CSVCQDRSKEVVITKCYHLFCSPCIQRNLELRHRKCPGCGIPFGQNDVRVVYI 884

[Close]

BLAST of FG530158 vs. TrEMBL
Match: A9TJ88_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_222810 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.362e-14
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            CS+C DR  + VITKCYHLFC+ CIQ+   SR RKCP CG  FG ND++ VY+
Sbjct:  792 CSVCHDRNFQAVITKCYHLFCSPCIQRSLDSRHRKCPGCGVPFGQNDVRTVYI 844

[Close]

BLAST of FG530158 vs. TrEMBL
Match: C1MP15_MICPS (Predicted protein OS=Micromonas pusilla CCMP1545 GN=MICPUCDRAFT_46639 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.092e-13
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVY 158
            CS+C DR K V+IT+CYH+FC  CIQ    +R RKCP CGA F A D+KP+Y
Sbjct:  785 CSVCNDRLKGVIITRCYHMFCQECIQTRIDNRARKCPGCGAAFAAADVKPIY 836

[Close]

BLAST of FG530158 vs. TrEMBL
Match: B9SY00_RICCO (Ubiquitin-protein ligase bre-1, putative OS=Ricinus communis GN=RCOM_1455450 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.433e-13
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIK 149
            CS+C DR KEVVI KCYHLFCN CIQ+    R RKCP CG  FG ND++
Sbjct:  893 CSVCSDRPKEVVIVKCYHLFCNPCIQRNLEIRHRKCPGCGTAFGQNDVR 941

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1A_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.457e-19
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C IC DR KEVVITKCYHLFCN CIQK  G+RQR+CP C   FGAND+KP+Y+
Sbjct:  832 CGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIYI 884

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1A_ORYSI (E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.457e-19
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C IC DR KEVVITKCYHLFCN CIQK  G+RQR+CP C   FGAND+KP+Y+
Sbjct:  832 CGICHDRQKEVVITKCYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIYI 884

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1A_ARATH (E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.191e-19
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C  C DR KEVVITKCYHLFCN C+QK+ G+RQ+KCP C A FG NDIKP+Y+
Sbjct:  826 CKACNDRPKEVVITKCYHLFCNPCVQKLTGTRQKKCPTCSASFGPNDIKPIYI 878

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1B_ARATH (E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.015e-13
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPV 155
            C +C DR KEVVI KCYHLFC  CIQ+    R RKCP CG  FG ND++ V
Sbjct:  848 CGVCFDRPKEVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLV 898

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1B_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.999e-13
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPV 155
            C +C DR KEVVITKC+HLFC+ CIQ+    R RKCP CG  FG +D++ V
Sbjct:  792 CGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREV 842

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1B_ORYSI (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.999e-13
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPV 155
            C +C DR KEVVITKC+HLFC+ CIQ+    R RKCP CG  FG +D++ V
Sbjct:  792 CGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVREV 842

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1_USTMA (E3 ubiquitin-protein ligase BRE1 OS=Ustilago maydis GN=BRE1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.105e-11
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            CS C++R +  ++TKCYH FC+ CI     +RQRKCP C   F  +D++P+YL
Sbjct:  764 CSSCKERYRNRILTKCYHTFCSECIDSRVQTRQRKCPHCALAFAVSDVQPLYL 816

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1_CAEEL (E3 ubiquitin-protein ligase bre-1 OS=Caenorhabditis elegans GN=rfp-1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C  C+ R K+ ++ KCYHLFC +CI+ +  +RQRKCP+C + FGAND   +++
Sbjct:  785 CPSCKTRPKDCIMLKCYHLFCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 837

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1_CAEBR (E3 ubiquitin-protein ligase bre-1 OS=Caenorhabditis briggsae GN=rfp-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C  C+ R K+ ++ KCYHLFC +CI+ +  +RQRKCP+C + FGAND   +++
Sbjct:  776 CPSCKTRPKDCIMLKCYHLFCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 828

[Close]

BLAST of FG530158 vs. SwissProt
Match: BRE1A_MOUSE (E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C  C  R K+ V+TKC+H+FC  C++    +RQRKCP+C A FGAND   +Y+
Sbjct:  920 CPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 972

[Close]

BLAST of FG530158 vs. TAIR peptide
Match: AT2G44950.1 (| Symbols: RDO4, HUB1 | histone mono-ubiquitination 1 | chr2:18542602-18548247 REVERSE LENGTH=878)

HSP 1 Score: 94.3597 bits (233), Expect = 4.487e-20
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPVYL 161
            C  C DR KEVVITKCYHLFCN C+QK+ G+RQ+KCP C A FG NDIKP+Y+
Sbjct:  826 CKACNDRPKEVVITKCYHLFCNPCVQKLTGTRQKKCPTCSASFGPNDIKPIYI 878

[Close]

BLAST of FG530158 vs. TAIR peptide
Match: AT1G55250.2 (| Symbols: | histone mono-ubiquitination 2 | chr1:20610166-20612302 FORWARD LENGTH=383)

HSP 1 Score: 75.485 bits (184), Expect = 2.157e-14
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPV 155
            C +C DR KEVVI KCYHLFC  CIQ+    R RKCP CG  FG ND++ V
Sbjct:  331 CGVCFDRPKEVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLV 381

[Close]

BLAST of FG530158 vs. TAIR peptide
Match: AT1G55250.1 (| Symbols: HUB2 | histone mono-ubiquitination 2 | chr1:20607214-20612302 FORWARD LENGTH=900)

HSP 1 Score: 75.485 bits (184), Expect = 2.157e-14
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 3

Query:    3 CSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPV 155
            C +C DR KEVVI KCYHLFC  CIQ+    R RKCP CG  FG ND++ V
Sbjct:  848 CGVCFDRPKEVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLV 898

[Close]

BLAST of FG530158 vs. TAIR peptide
Match: AT1G55250.4 (| Symbols: HUB2 | histone mono-ubiquitination 2 | chr1:20610166-20612302 FORWARD LENGTH=397)

HSP 1 Score: 65.855 bits (159), Expect = 1.709e-11
Identity = 31/65 (47.69%), Postives = 35/65 (53.85%), Query Frame = 3

Query:    3 CSICRDRTKE--------------VVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPV 155
            C +C DR KE              VVI KCYHLFC  CIQ+    R RKCP CG  FG ND++ V
Sbjct:  331 CGVCFDRPKERISTTAFCFKHYLQVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLV 395

[Close]

BLAST of FG530158 vs. TAIR peptide
Match: AT1G55250.3 (| Symbols: HUB2 | histone mono-ubiquitination 2 | chr1:20607214-20612302 FORWARD LENGTH=899)

HSP 1 Score: 65.855 bits (159), Expect = 1.709e-11
Identity = 31/65 (47.69%), Postives = 35/65 (53.85%), Query Frame = 3

Query:    3 CSICRDRTKE--------------VVITKCYHLFCNSCIQKIAGSRQRKCPQCGACFGANDIKPV 155
            C +C DR KE              VVI KCYHLFC  CIQ+    R RKCP CG  FG ND++ V
Sbjct:  833 CGVCFDRPKERISTTAFCFKHYLQVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLV 897

The following BLAST results are available for this feature:

BLAST of FG530158 vs. TrEMBL
BLAST of FG530158 vs. SwissProt
BLAST of FG530158 vs. TAIR peptide

BLAST of FG530158 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9FGG6_ORYSJ	3.281e-18	71.70	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8Q8A6_ORYSI	3.281e-18	71.70	SKIP interacting protein 20 OS=Oryza sativa subsp....	[more]
D7LBU2_ARALY	5.596e-18	69.81	Histone mono-ubiquitination 1 OS=Arabidopsis lyrat...	[more]
C5Z8U2_SORBI	7.309e-18	69.81	Putative uncharacterized protein Sb10g028660 OS=So...	[more]
D7SLV1_VITVI	1.378e-16	67.92	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9GP99_POPTR	1.167e-15	67.92	Histone ubiquitination proteins group OS=Populus t...	[more]
A9RK65_PHYPA	1.290e-14	64.15	Predicted protein OS=Physcomitrella patens subsp. ...	[more]
A9TJ88_PHYPA	8.362e-14	60.38	Predicted protein OS=Physcomitrella patens subsp. ...	[more]
C1MP15_MICPS	1.092e-13	59.62	Predicted protein OS=Micromonas pusilla CCMP1545 G...	[more]
B9SY00_RICCO	2.433e-13	65.31	Ubiquitin-protein ligase bre-1, putative OS=Ricinu...	[more]

BLAST of FG530158 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
BRE1A_ORYSJ	2.457e-19	71.70	E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza s...	[more]
BRE1A_ORYSI	2.457e-19	71.70	E3 ubiquitin-protein ligase BRE1-like 1 OS=Oryza s...	[more]
BRE1A_ARATH	4.191e-19	69.81	E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabido...	[more]
BRE1B_ARATH	2.015e-13	60.78	E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabido...	[more]
BRE1B_ORYSJ	9.999e-13	58.82	E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s...	[more]
BRE1B_ORYSI	9.999e-13	58.82	E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s...	[more]
BRE1_USTMA	1.105e-11	47.17	E3 ubiquitin-protein ligase BRE1 OS=Ustilago maydi...	[more]
BRE1_CAEEL	1.886e-11	47.17	E3 ubiquitin-protein ligase bre-1 OS=Caenorhabditi...	[more]
BRE1_CAEBR	1.886e-11	47.17	E3 ubiquitin-protein ligase bre-1 OS=Caenorhabditi...	[more]
BRE1A_MOUSE	1.886e-11	49.06	E3 ubiquitin-protein ligase BRE1A OS=Mus musculus ...	[more]

BLAST of FG530158 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G44950.1	4.487e-20	69.81	\| Symbols: RDO4, HUB1 \| histone mono-ubiquitinatio...	[more]
AT1G55250.2	2.157e-14	60.78	\| Symbols: \| histone mono-ubiquitination 2 \| chr1...	[more]
AT1G55250.1	2.157e-14	60.78	\| Symbols: HUB2 \| histone mono-ubiquitination 2 \| ...	[more]
AT1G55250.4	1.709e-11	47.69	\| Symbols: HUB2 \| histone mono-ubiquitination 2 \| ...	[more]
AT1G55250.3	1.709e-11	47.69	\| Symbols: HUB2 \| histone mono-ubiquitination 2 \| ...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	no description	coord: 1..39 score: 3.8
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 1..39 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	no description	coord: 1..52 score: 6.6
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 16..25 score
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 1..39 score: 2.5
None	No IPR available	PANTHER	PTHR23163	RING FINGER PROTEIN-RELATED	coord: 1..53 score: 2.8
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 1..53 score: 7

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FG530158 ID=FG530158; Name=FG530158; organism=Pisum sativum; type=EST; length=562bp
AGTGCAGTATTTGTCGAGACAGGACAAAAGAGGTGGTAATTACAAAATGC
TACCACTTGTTTTGCAACTCATGTATCCAGAAAATTGCTGGGAGTCGGCA
GCGCAAATGTCCACAATGTGGTGCATGTTTCGGGGCCAATGATATTAAGC
CGGTTTATTTGTAACTATGTTCAACTGCCGAGATCAGGAACGTTGGTGGC
AATCCACAAGTGCCTGTCTCCTTTTCTTTTGTACCATAAATGATTCTTTT
TGCCGGTACTTGAAGTTTCTTAGTACCACATGTACTCTTTCTTGAAAATG
GGATGCTTGATTTTACTCTGTGGAAAGAATTGAAAACCACAAGAAACGTA
AAATTCGTTCTTTGCAGGTTTATCAAAATTCTTCTTCCAAATGAGATTTG
GAGAAGGCCATGAAGGTTGCTCTTTGACTGTACAATTAATATTTCAAAAT
ATTGGTAGCCCAAACTGGCCATGATGGCTTTATGCCTTGGAAGTTAACTC
ATAAGAGAGAGCAATGAAATGTCTTGCTTTTTAGATTAATAGTTCTTTTT
CCTGCTGCTACG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR018957	Znf_C3HC4_RING-type

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