FG529528

EST Overview


Name	FG529528
Unique Name	FG529528
Type	EST
Organism	Pisum sativum (pea)
Sequence length	307

Libraries


Library Name	Type
LIBEST_023217 MeriP Pisum sativum Shoot apical meristem ESTs	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

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BLAST of FG529528 vs. TrEMBL
Match: C6TAB8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.737e-46
Identity = 91/101 (90.10%), Postives = 96/101 (95.05%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSPYKRQR 305
            PYGKIVSVRIRRNFAFVQYESEDDAS+ALEATNMSKLLDRVISVEFA KDDD RRNG+SPERGRDRQRDRS DGRRSPSPYR+ERGSPDYG G SPY+R+R
Sbjct:  123 PYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRKERGSPDYGRGPSPYQRER 223

[Close]

BLAST of FG529528 vs. TrEMBL
Match: B7FHT4_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.741e-45
Identity = 90/101 (89.11%), Postives = 95/101 (94.06%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSPYKRQR 305
            PYGKIVSVRIR+NFAFVQYESEDDA KALEATN SKL+DRVISVEFAA+DDD RRNGHSP+RGRDRQRDRS DGRRSPSPYRRERGSPDYG G SPYKR+R
Sbjct:  119 PYGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDDD-RRNGHSPDRGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRER 218

[Close]

BLAST of FG529528 vs. TrEMBL
Match: B9R9G7_RICCO (Arginine/serine-rich splicing factor, putative OS=Ricinus communis GN=RCOM_1497410 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.743e-38
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRD-RSLDGRRSPSPYRRERGSPDYGHGSS--PYKRQR 305
            PYG+IVSVRIRRNFAFVQYES+DDA+KALEATNMSKL+DRVISVE+A +DDD RRNG+SP+RGRDR  D RS D +RS SPYRRERGSPDYG G S  PY+R+R
Sbjct:   77 PYGRIVSVRIRRNFAFVQYESQDDATKALEATNMSKLMDRVISVEYAVRDDDERRNGYSPDRGRDRSPDRRSHDRKRSSSPYRRERGSPDYGRGPSPGPYRRER 180

[Close]

BLAST of FG529528 vs. TrEMBL
Match: B9ID09_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_253698 PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.322e-37
Identity = 75/102 (73.53%), Postives = 91/102 (89.22%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRD-RSLDGRRSPSPYRRERGSPDYGHGSSPYKRQR 305
            PYG+IVSVRIRRNFAFVQYE+++DA+KAL+ATN+SKLLDRVISVE+A +DDD R++G+SP+R RDR  D R  D RRSPSPYRRERGSPDYG G SPY+++R
Sbjct:  118 PYGRIVSVRIRRNFAFVQYEAQEDATKALDATNLSKLLDRVISVEYAVRDDDERKDGYSPDRSRDRSPDRRGHDRRRSPSPYRRERGSPDYGRGPSPYRKER 219

[Close]

BLAST of FG529528 vs. TrEMBL
Match: B9I4G0_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_423171 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.174e-37
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRD-RSLDGRRSPSPYRRERGSPDYGHGSSPYKRQR 305
            PYG+IVSVRIRRNFAFVQYE+++DA+KAL+ATNMSKLL RVISVE+AA+DD  R++GHSP+R RDR  D R  D RRSPSPYRRERGS DYGHG SPY+++R
Sbjct:  118 PYGRIVSVRIRRNFAFVQYEAQEDATKALDATNMSKLLYRVISVEYAARDDGERKDGHSPDRSRDRSPDRRGHDRRRSPSPYRRERGSTDYGHGPSPYRKER 219

[Close]

BLAST of FG529528 vs. TrEMBL
Match: B9GPU9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_849165 PE=4 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.380e-36
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPE-RGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSPYKR 299
            PYGKI+S RIRRNFAFVQYE ++DA+KALEATNMSKL+DRVISVE+AA+DDD RRNG+SPE RGRDR  DR+    RSPSPYRR+RGSPDYGHG +   R
Sbjct:  117 PYGKILSTRIRRNFAFVQYELQEDATKALEATNMSKLMDRVISVEYAARDDDERRNGYSPERRGRDRSPDRNYSRERSPSPYRRDRGSPDYGHGQNTNAR 216

[Close]

BLAST of FG529528 vs. TrEMBL
Match: Q6R4Q7_VITRI (Splicing factor-like protein OS=Vitis riparia PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.174e-35
Identity = 74/104 (71.15%), Postives = 91/104 (87.50%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPE-RGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKI+++RIRRNFAF+QYES++DA++ALEATNMSKL+DRVISVE+A +DDD RRNG+SP+ R RD+  +RS D  RS SPYRRERGSPDYG GSSP  Y+R+R
Sbjct:  118 PYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSPDGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRRER 221

[Close]

BLAST of FG529528 vs. TrEMBL
Match: A5AVS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021436 PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.174e-35
Identity = 74/104 (71.15%), Postives = 91/104 (87.50%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPE-RGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKI+++RIRRNFAF+QYES++DA++ALEATNMSKL+DRVISVE+A +DDD RRNG+SP+ R RD+  +RS D  RS SPYRRERGSPDYG GSSP  Y+R+R
Sbjct:  118 PYGKILNIRIRRNFAFIQYESQEDATRALEATNMSKLMDRVISVEYAVRDDDERRNGYSPDGRRRDKSSERSYDKGRSLSPYRRERGSPDYGRGSSPSAYRRER 221

[Close]

BLAST of FG529528 vs. TrEMBL
Match: D7MRM0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495275 PE=4 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.839e-35
Identity = 75/103 (72.82%), Postives = 89/103 (86.41%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKIV+VRIRRNFAF+QYES++DA++AL+ATN SKL+D+VISVE+A KDDD R NG+SPER RDR  DR    RRSPSPYRRERGSPDYG G+SP  +KR+R
Sbjct:  119 PYGKIVNVRIRRNFAFIQYESQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRR---RRSPSPYRRERGSPDYGRGASPVAHKRER 218

[Close]

BLAST of FG529528 vs. TrEMBL
Match: Q3E8C5_ARATH (Putative uncharacterized protein At5g52040.2 OS=Arabidopsis thaliana GN=At5g52040 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.324e-35
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+ATN SKL+D+VISVE+A KDDD R NG+SPER RDR  DR    RRSPSPYRRERGSPDYG G+SP  +KR+R
Sbjct:  119 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRR---RRSPSPYRRERGSPDYGRGASPVAHKRER 218

[Close]

BLAST of FG529528 vs. SwissProt
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.058e-36
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+ATN SKL+D+VISVE+A KDDD R NG+SPER RDR  DR    RRSPSPYRRERGSPDYG G+SP  +KR+R
Sbjct:  119 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRR---RRSPSPYRRERGSPDYGRGASPVAHKRER 218

[Close]

BLAST of FG529528 vs. SwissProt
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.517e-35
Identity = 71/104 (68.27%), Postives = 89/104 (85.58%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP---YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+A+N SKL+D+VISVE+A KDDD R NGHSPER RDR  +R    RRSPSPY+RERGSPDYG G+SP   Y+++R
Sbjct:  120 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERR---RRSPSPYKRERGSPDYGRGASPVAAYRKER 220

[Close]

BLAST of FG529528 vs. SwissProt
Match: RSP31_ARATH (Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.063e-23
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDV---RRNGHSPERGRD--RQRDRSLDGRRSPSPYRRERGSPDYGHGSSP 290
            PYGK+ +VRIRRNF+FVQ+E+++DA+KALEAT  SK+LDRV+SVE+A KDDD    R  G SP R      +R  S D  R PSP +  R SPDYG   SP
Sbjct:  116 PYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSP 216

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT5G52040.4 (| Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131881-21133318 FORWARD LENGTH=324)

HSP 1 Score: 150.214 bits (378), Expect = 2.411e-37
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+ATN SKL+D+VISVE+A KDDD R NG+SPER RDR  DR    RRSPSPYRRERGSPDYG G+SP  +KR+R
Sbjct:   86 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRR---RRSPSPYRRERGSPDYGRGASPVAHKRER 185

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT5G52040.3 (| Symbols: RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131791-21133318 FORWARD LENGTH=329)

HSP 1 Score: 150.214 bits (378), Expect = 2.411e-37
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+ATN SKL+D+VISVE+A KDDD R NG+SPER RDR  DR    RRSPSPYRRERGSPDYG G+SP  +KR+R
Sbjct:   92 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRR---RRSPSPYRRERGSPDYGRGASPVAHKRER 191

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT5G52040.2 (| Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131081-21133318 FORWARD LENGTH=357)

HSP 1 Score: 150.214 bits (378), Expect = 2.411e-37
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+ATN SKL+D+VISVE+A KDDD R NG+SPER RDR  DR    RRSPSPYRRERGSPDYG G+SP  +KR+R
Sbjct:  119 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRR---RRSPSPYRRERGSPDYGRGASPVAHKRER 218

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT5G52040.1 (| Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131081-21133318 FORWARD LENGTH=356)

HSP 1 Score: 150.214 bits (378), Expect = 2.411e-37
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP--YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+ATN SKL+D+VISVE+A KDDD R NG+SPER RDR  DR    RRSPSPYRRERGSPDYG G+SP  +KR+R
Sbjct:  119 PYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDRR---RRSPSPYRRERGSPDYGRGASPVAHKRER 218

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT4G25500.4 (| Symbols: RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025168-13027243 FORWARD LENGTH=350)

HSP 1 Score: 147.902 bits (372), Expect = 1.196e-36
Identity = 71/104 (68.27%), Postives = 89/104 (85.58%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP---YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+A+N SKL+D+VISVE+A KDDD R NGHSPER RDR  +R    RRSPSPY+RERGSPDYG G+SP   Y+++R
Sbjct:  120 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERR---RRSPSPYKRERGSPDYGRGASPVAAYRKER 220

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT4G25500.3 (| Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025850-13027243 FORWARD LENGTH=317)

HSP 1 Score: 147.902 bits (372), Expect = 1.196e-36
Identity = 71/104 (68.27%), Postives = 89/104 (85.58%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP---YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+A+N SKL+D+VISVE+A KDDD R NGHSPER RDR  +R    RRSPSPY+RERGSPDYG G+SP   Y+++R
Sbjct:   87 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERR---RRSPSPYKRERGSPDYGRGASPVAAYRKER 187

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT4G25500.2 (| Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13026073-13027243 FORWARD LENGTH=309)

HSP 1 Score: 147.902 bits (372), Expect = 1.196e-36
Identity = 71/104 (68.27%), Postives = 89/104 (85.58%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP---YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+A+N SKL+D+VISVE+A KDDD R NGHSPER RDR  +R    RRSPSPY+RERGSPDYG G+SP   Y+++R
Sbjct:   79 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERR---RRSPSPYKRERGSPDYGRGASPVAAYRKER 179

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT4G25500.1 (| Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025168-13027243 FORWARD LENGTH=350)

HSP 1 Score: 147.902 bits (372), Expect = 1.196e-36
Identity = 71/104 (68.27%), Postives = 89/104 (85.58%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGRDRQRDRSLDGRRSPSPYRRERGSPDYGHGSSP---YKRQR 305
            PYGKIV+VRIRRNFAF+QYE+++DA++AL+A+N SKL+D+VISVE+A KDDD R NGHSPER RDR  +R    RRSPSPY+RERGSPDYG G+SP   Y+++R
Sbjct:  120 PYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPERR---RRSPSPYKRERGSPDYGRGASPVAAYRKER 220

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT3G61860.1 (| Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:22900311-22902159 REVERSE LENGTH=264)

HSP 1 Score: 106.301 bits (264), Expect = 3.992e-24
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDV---RRNGHSPERGRD--RQRDRSLDGRRSPSPYRRERGSPDYGHGSSP 290
            PYGK+ +VRIRRNF+FVQ+E+++DA+KALEAT  SK+LDRV+SVE+A KDDD    R  G SP R      +R  S D  R PSP +  R SPDYG   SP
Sbjct:  116 PYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPDYGRARSP 216

[Close]

BLAST of FG529528 vs. TAIR peptide
Match: AT2G46610.2 (| Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:19136769-19137858 REVERSE LENGTH=224)

HSP 1 Score: 94.7449 bits (234), Expect = 1.202e-20
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = 3

Query:    3 PYGKIVSVRIRRNFAFVQYESEDDASKALEATNMSKLLDRVISVEFAAKDDDVRRNGHSPERGR---------------DRQRDRSLDGRRSPSPYRRERGSPDYGHGSSPYKRQR 305
            PYGK+++VR+RRNFAFVQ+ +++DA+KAL++T+ SKLLD+V+SVE+A ++   R + ++  R R                R+R    D  + P+PY R R SPDYG  SS Y R R
Sbjct:   92 PYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYER-RKSPDYGRRSSDYGRAR 206

The following BLAST results are available for this feature:

BLAST of FG529528 vs. TrEMBL
BLAST of FG529528 vs. SwissProt
BLAST of FG529528 vs. TAIR peptide

BLAST of FG529528 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6TAB8_SOYBN	2.737e-46	90.10	Putative uncharacterized protein OS=Glycine max PE...	[more]
B7FHT4_MEDTR	6.741e-45	89.11	Putative uncharacterized protein OS=Medicago trunc...	[more]
B9R9G7_RICCO	2.743e-38	77.88	Arginine/serine-rich splicing factor, putative OS=...	[more]
B9ID09_POPTR	2.322e-37	73.53	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9I4G0_POPTR	5.174e-37	74.51	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9GPU9_POPTR	4.380e-36	75.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q6R4Q7_VITRI	2.174e-35	71.15	Splicing factor-like protein OS=Vitis riparia PE=2...	[more]
A5AVS4_VITVI	2.174e-35	71.15	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7MRM0_ARALY	2.839e-35	72.82	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q3E8C5_ARATH	6.324e-35	71.84	Putative uncharacterized protein At5g52040.2 OS=Ar...	[more]

BLAST of FG529528 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
RSP41_ARATH	3.058e-36	71.84	Arginine/serine-rich-splicing factor RSP41 OS=Arab...	[more]
RSP40_ARATH	1.517e-35	68.27	Arginine/serine-rich-splicing factor RSP40 OS=Arab...	[more]
RSP31_ARATH	5.063e-23	56.44	Arginine/serine-rich-splicing factor RSP31 OS=Arab...	[more]

BLAST of FG529528 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT5G52040.4	2.411e-37	71.84	\| Symbols: RS41, At-RS41 \| RNA-binding (RRM/RBD/RN...	[more]
AT5G52040.3	2.411e-37	71.84	\| Symbols: RS41, At-RS41 \| RNA-binding (RRM/RBD/RN...	[more]
AT5G52040.2	2.411e-37	71.84	\| Symbols: ATRSP41, RS41, At-RS41 \| RNA-binding (R...	[more]
AT5G52040.1	2.411e-37	71.84	\| Symbols: ATRSP41, RS41, At-RS41 \| RNA-binding (R...	[more]
AT4G25500.4	1.196e-36	68.27	\| Symbols: RSP35, RS40, At-RS40 \| arginine/serine-...	[more]
AT4G25500.3	1.196e-36	68.27	\| Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40...	[more]
AT4G25500.2	1.196e-36	68.27	\| Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40...	[more]
AT4G25500.1	1.196e-36	68.27	\| Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40...	[more]
AT3G61860.1	3.992e-24	56.44	\| Symbols: ATRSP31, RSP31, At-RS31, RS31 \| RNA-bin...	[more]
AT2G46610.2	1.202e-20	43.97	\| Symbols: RS31a, At-RS31a \| RNA-binding (RRM/RBD/...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 1..42 score: 5.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 1..49 score: 11
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 1..62 score: 6.5
None	No IPR available	PANTHER	PTHR10432	RNA-BINDING PROTEIN	coord: 1..101 score: 5.4
None	No IPR available	PANTHER	PTHR10432:SF65	RNA-BINDING PROTEIN 28	coord: 1..101 score: 5.4
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..77 score: 3.1

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FG529528 ID=FG529528; Name=FG529528; organism=Pisum sativum; type=EST; length=307bp
AGCCATATGGTAAGATAGTCAGTGTGAGGATCAGGAGGAATTTTGCATTT
GTTCAGTATGAATCAGAAGATGATGCTTCCAAAGCCCTGGAAGCTACAAA
TATGAGCAAGCTGTTGGATCGGGTTATTTCAGTTGAATTTGCTGCCAAAG
ACGACGATGTCAGGCGAAATGGACATAGCCCGGAGAGAGGCCGTGATCGT
CAGCGTGACAGAAGCCTTGATGGAAGGCGATCGCCCAGTCCTTATCGTAG
AGAAAGGGGTAGTCCTGATTACGGCCATGGGTCTAGTCCATATAAGAGGC
AGAGGAG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

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