FG531253

EST Overview
NameFG531253
Unique NameFG531253
TypeEST
OrganismPisum sativum (pea)
Sequence length361
Libraries
Library NameType
LIBEST_023217 MeriP Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of FG531253 vs. TrEMBL
Match: D7SUY3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035901001 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.140e-29
Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 2
Query:    5 QVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDVS-VACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEPAEV 355
            QVEF+KKRVLLLEK LN EYQKEYFGD K+ E+ +E+  +E K   + S   V+ + Q++DQLP++E IA E++S  ACD  P R E+ RLYNEMCKV+ EN  + VQ+ LA +PA +
Sbjct: 1197 QVEFIKKRVLLLEKALNTEYQKEYFGDIKSNEIASEDPENEAKVIDISSPSNVEVDAQIMDQLPRIEVIASEEISATACDDKPERAEMARLYNEMCKVLAENVHESVQSYLANQPASL 1314          
BLAST of FG531253 vs. TrEMBL
Match: A5BRA6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043255 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.140e-29
Identity = 64/118 (54.24%), Postives = 85/118 (72.03%), Query Frame = 2
Query:    5 QVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDVS-VACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEPAEV 355
            QVEF+KKRVLLLEK LN EYQKEYFGD K+ E+ +E+  +E K   + S   V+ + Q++DQLP++E IA E++S  ACD  P R E+ RLYNEMCKV+ EN  + VQ+ LA +PA +
Sbjct:  480 QVEFIKKRVLLLEKALNTEYQKEYFGDIKSNEIASEDPENEAKVIDISSPSNVEVDAQIMDQLPRIEVIASEEISATACDDKPERAEMARLYNEMCKVLAENVHESVQSYLANQPASL 597          
BLAST of FG531253 vs. TrEMBL
Match: B9RNX6_RICCO (Chromodomain helicase DNA binding protein, putative OS=Ricinus communis GN=RCOM_0921900 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.351e-28
Identity = 62/118 (52.54%), Postives = 84/118 (71.19%), Query Frame = 2
Query:    5 QVEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDV-SVACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEPAEV 355
            QVEF+KKRVLLLEKGLNAEYQKEYF D K+ E+  EE   ++K+    +    +T+ QMIDQLPQ E I  E++ + A D DP+RLEL +LYN+MC ++E+N  + VQ S+  +PA +
Sbjct: 1196 QVEFIKKRVLLLEKGLNAEYQKEYFDDSKSNEIATEEPEGDIKAADGFNLGSTETDAQMIDQLPQTELITTEEILTAAYDDDPDRLELPQLYNKMCNILEQNVQESVQTSITNQPASL 1313          
BLAST of FG531253 vs. TrEMBL
Match: B9HAU9_POPTR (Chromatin remodeling complex subunit (Fragment) OS=Populus trichocarpa GN=CHR911 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.283e-27
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 2
Query:    5 QVEFVKKRVLLLEKGLNAEYQKEYFG-DPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDVS-VACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEPAEV 355
            QVEF+KKRVLLLE+GLNAEYQK YFG D K  E+T+EE   E K+    S   ++ N QMIDQLPQ+E I  E++S  ACD +P+RL L   YN+MC V+E+N  + +Q SL   PA +
Sbjct: 1185 QVEFIKKRVLLLERGLNAEYQKIYFGGDIKPNEITSEEADGETKAADSSSLGSIEINAQMIDQLPQMEPIGSEEISAAACDDNPDRLALAEHYNKMCTVLEQNVHETIQISLTNHPASL 1303          
BLAST of FG531253 vs. TrEMBL
Match: B9IL39_POPTR (Chromatin remodeling complex subunit (Fragment) OS=Populus trichocarpa GN=CHR909 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-26
Identity = 64/119 (53.78%), Postives = 87/119 (73.11%), Query Frame = 2
Query:    5 QVEFVKKRVLLLEKGLNAEYQKEYF-GDPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDVS-VACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEPAEV 355
            QVEF+KKRVLLLE+GL AEYQKEYF GD KA E+T+EE   E  +    S   ++ + QMIDQLP++E+IA E++S  ACD +P+RL L +LYN+MC V+E+N  + +Q SL  +PA +
Sbjct: 1182 QVEFIKKRVLLLERGLYAEYQKEYFGGDIKANEITSEEADCETMAADRSSLGSIEISAQMIDQLPRMESIALEEISAAACDDNPDRLALPQLYNKMCTVLEQNIHESIQISLTNQPASL 1300          
BLAST of FG531253 vs. TrEMBL
Match: D7LK56_ARALY (PKL/SSL2 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_344116 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.715e-16
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    8 VEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDVSVAC-DSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEP 346
            VEFVKKRVLLLEK LN EY ++Y+G   +  +  EE  +E K T       ++ + +M+D LP+ + I  E++ VA  D++  R+E+ + YN+MCKV  EN  + +QA +  +P
Sbjct: 1188 VEFVKKRVLLLEKALNYEYAEDYYGLGGSSSIPAEEPEAEPKVTDTVGVSFIEVDDEMLDGLPKTDPITSEEIMVAAVDNNQARVEIAQHYNQMCKVFNENARESLQAYVNNQP 1301          
BLAST of FG531253 vs. SwissProt
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.428e-17
Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    8 VEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDV-SVACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEP 346
            VEFVKKRVLLLEK +N EY +EY+G   +  +  EE  +E K         ++ + +M+D LP+ + I  E++   A D++  R+E+ + YN+MCK+++EN  + VQA +  +P
Sbjct: 1173 VEFVKKRVLLLEKAMNYEYAEEYYGLGGSSSIPTEEPEAEPKIADTVGVSFIEVDDEMLDGLPKTDPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQP 1286          
BLAST of FG531253 vs. TAIR peptide
Match: AT2G25170.1 (| Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384)

HSP 1 Score: 88.1965 bits (217), Expect = 1.179e-18
Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    8 VEFVKKRVLLLEKGLNAEYQKEYFGDPKAGEVTNEELRSELKSTSVPSYKPVDTNTQMIDQLPQVETIAPEDV-SVACDSDPNRLELVRLYNEMCKVVEENPMDLVQASLAGEP 346
            VEFVKKRVLLLEK +N EY +EY+G   +  +  EE  +E K         ++ + +M+D LP+ + I  E++   A D++  R+E+ + YN+MCK+++EN  + VQA +  +P
Sbjct: 1173 VEFVKKRVLLLEKAMNYEYAEEYYGLGGSSSIPTEEPEAEPKIADTVGVSFIEVDDEMLDGLPKTDPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQP 1286          
The following BLAST results are available for this feature:
BLAST of FG531253 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
D7SUY3_VITVI5.140e-2954.24Whole genome shotgun sequence of line PN40024, sca... [more]
A5BRA6_VITVI5.140e-2954.24Putative uncharacterized protein OS=Vitis vinifera... [more]
B9RNX6_RICCO4.351e-2852.54Chromodomain helicase DNA binding protein, putativ... [more]
B9HAU9_POPTR6.283e-2753.78Chromatin remodeling complex subunit (Fragment) OS... [more]
B9IL39_POPTR1.072e-2653.78Chromatin remodeling complex subunit (Fragment) OS... [more]
D7LK56_ARALY1.715e-1640.35PKL/SSL2 OS=Arabidopsis lyrata subsp. lyrata GN=AR... [more]
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BLAST of FG531253 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
PKL_ARATH1.428e-1738.60CHD3-type chromatin-remodeling factor PICKLE OS=Ar... [more]
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BLAST of FG531253 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G25170.11.179e-1838.60| Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin ... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 1..18
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG531253 ID=FG531253; Name=FG531253; organism=Pisum sativum; type=EST; length=361bp
AGGACAGGTTGAGTTTGTAAAGAAGAGGGTTCTTCTTTTGGAAAAGGGGC
TCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCTGGTGAA
GTAACCAATGAAGAACTTAGAAGTGAACTCAAGTCTACCAGTGTTCCAAG
TTATAAACCAGTGGATACTAATACCCAAATGATCGATCAATTGCCACAAG
TAGAAACCATAGCTCCAGAAGATGTTTCAGTTGCTTGTGATAGTGATCCA
AATCGATTGGAGTTAGTTCGACTTTACAACGAGATGTGCAAGGTAGTTGA
GGAAAACCCCATGGATTTAGTTCAAGCTTCATTGGCAGGAGAACCGGCAG
AGGTCAATGCA
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