FG534984

EST Overview
NameFG534984
Unique NameFG534984
TypeEST
OrganismPisum sativum (pea)
Sequence length617
Libraries
Library NameType
LIBEST_023215 MeriZ Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology
BLAST of FG534984 vs. TrEMBL
Match: D7T712_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018011001 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.833e-13
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    4 HCVDNSSYLGCALPERIEHFDEDVGENSGFGLNEDNTWPSNNVEFGQDSFQS-ELPKPVTNEAEWSDGW 207
            HC DN SY GCALPER +  D++  + S F   E+N  PSN VE G++ FQ+ E+PKPV +EAEWSDGW
Sbjct:  809 HCSDNDSYQGCALPERQDFVDKEPVQFS-FNHEEENPQPSNEVERGEEPFQAEEIPKPVKDEAEWSDGW 876          
BLAST of FG534984 vs. TrEMBL
Match: A5BBR8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014567 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.833e-13
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    4 HCVDNSSYLGCALPERIEHFDEDVGENSGFGLNEDNTWPSNNVEFGQDSFQS-ELPKPVTNEAEWSDGW 207
            HC DN SY GCALPER +  D++  + S F   E+N  PSN VE G++ FQ+ E+PKPV +EAEWSDGW
Sbjct:  809 HCSDNDSYQGCALPERQDFVDKEPVQFS-FNHEEENPQPSNEVERGEEPFQAEEIPKPVKDEAEWSDGW 876          
BLAST of FG534984 vs. TrEMBL
Match: B9NBN6_POPTR (Putative uncharacterized protein RHEL901 OS=Populus trichocarpa GN=RHEL901 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.412e-10
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    4 HCVDNSSYLGCALPE-RIEHFD-----EDVGENSGFGLNEDNTW-----PSNNVEFGQD---SFQSELPKPVTNEAEWSDGW 207
            HCVDN SY GCALPE R+E  D     ED  +  G  +  +  W     PS++ E G D   S Q+++P+PVT+EAEWSDGW
Sbjct:  812 HCVDNDSYQGCALPEKRLECVDNYPTYEDRVDYDGGPVTNEADWCDGWQPSSSGEVGWDHPGSSQAQIPEPVTDEAEWSDGW 893          
BLAST of FG534984 vs. TrEMBL
Match: B9RTN2_RICCO (ATP-dependent helicase NAM7, putative OS=Ricinus communis GN=RCOM_0911670 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.101e-9
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    4 HCVDNSSYLGCALPERIEHFDEDVGENSGFGLNEDNTWPSNNVEFG--QDSFQSELPKPVTNEAEWSDGW 207
            +C D+ SY GC LPE  E+ +E   ++ G   +  N  P +  E G  QD  Q+E PKPVT+E EWSDGW
Sbjct:  812 YCADHESYQGCGLPEGEEYVEEYQIQDDGANYDYYNGNPQSTEEHGWNQDYCQAETPKPVTDETEWSDGW 881          
BLAST of FG534984 vs. SwissProt
Match: SDE3_ARATH (Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.752e-11
Identity = 50/144 (34.72%), Postives = 66/144 (45.83%), Query Frame = 1
Query:    7 CVDNSSYLGCALPERIEHFDEDV---GENSGFGLNEDNTWPSNNVEFGQDSFQSELPKPVTNE-AEWSDGWNSNNVESGQAEWSDGWNKLPPNNVESGHGGC------SNGWNTPNNV----ESGQDSFPELPKPVTDEAEWSD 396
            CVDN++Y GC LPE+ E  +E     G ++G     +  W  NN          EL     NE  EWSDGWN+N     + EWSDGWN        S  GG       S+GW+         + G  + P+ P+    EAEW+D
Sbjct:  812 CVDNNAYQGCGLPEQEEFVEEPFKQEGSSNGPQYPPEAEW--NN--------SGELNNGGANENGEWSDGWNNNGGTKEKNEWSDGWN--------SNGGGTKKKDEWSDGWDNNGGTNGINQEGSSNAPQDPQ----EAEWND 933          
BLAST of FG534984 vs. TAIR peptide
Match: AT1G05460.1 (| Symbols: SDE3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1601357-1604658 REVERSE LENGTH=1002)

HSP 1 Score: 69.3218 bits (168), Expect = 1.820e-12
Identity = 50/144 (34.72%), Postives = 66/144 (45.83%), Query Frame = 1
Query:    7 CVDNSSYLGCALPERIEHFDEDV---GENSGFGLNEDNTWPSNNVEFGQDSFQSELPKPVTNE-AEWSDGWNSNNVESGQAEWSDGWNKLPPNNVESGHGGC------SNGWNTPNNV----ESGQDSFPELPKPVTDEAEWSD 396
            CVDN++Y GC LPE+ E  +E     G ++G     +  W  NN          EL     NE  EWSDGWN+N     + EWSDGWN        S  GG       S+GW+         + G  + P+ P+    EAEW+D
Sbjct:  812 CVDNNAYQGCGLPEQEEFVEEPFKQEGSSNGPQYPPEAEW--NN--------SGELNNGGANENGEWSDGWNNNGGTKEKNEWSDGWN--------SNGGGTKKKDEWSDGWDNNGGTNGINQEGSSNAPQDPQ----EAEWND 933          
The following BLAST results are available for this feature:
BLAST of FG534984 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
D7T712_VITVI1.833e-1356.52Whole genome shotgun sequence of line PN40024, sca... [more]
A5BBR8_VITVI1.833e-1356.52Putative uncharacterized protein OS=Vitis vinifera... [more]
B9NBN6_POPTR9.412e-1047.56Putative uncharacterized protein RHEL901 OS=Populu... [more]
B9RTN2_RICCO6.101e-945.71ATP-dependent helicase NAM7, putative OS=Ricinus c... [more]
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BLAST of FG534984 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
SDE3_ARATH1.752e-1134.72Probable RNA helicase SDE3 OS=Arabidopsis thaliana... [more]
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BLAST of FG534984 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G05460.11.820e-1234.72| Symbols: SDE3 | P-loop containing nucleoside tri... [more]
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Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG534984 ID=FG534984; Name=FG534984; organism=Pisum sativum; type=EST; length=617bp
GGGCACTGTGTGGACAATTCATCCTATCTGGGTTGTGCTCTTCCAGAAAG
GATAGAACATTTTGACGAGGATGTTGGAGAGAACTCTGGCTTTGGTTTAA
ATGAAGATAACACATGGCCCTCAAACAATGTAGAATTTGGTCAAGATTCC
TTCCAGTCAGAGCTCCCTAAACCTGTCACCAATGAAGCTGAATGGTCTGA
TGGGTGGAATTCTAACAATGTAGAATCCGGTCAAGCTGAATGGTCTGATG
GCTGGAACAAATTGCCCCCTAACAATGTAGAATCTGGTCATGGTGGATGC
TCTAATGGCTGGAACACACCCAACAATGTAGAATCTGGTCAAGATTCCTT
CCCAGAGCTCCCTAAGCCTGTCACGGATGAGGCTGAATGGTCTGATGGCT
GGAAGTAGTCCAGCACCAAGTACTTGGACCCTGAGATTCACATTTATACT
ATCTTTTTTGGGCAATTAGTTTATGTCGATTTTTAACATCATTTGAGTTT
TGCAATTAGAATGATGTGGGAAAAAAGACTGCCGCGAACTTTATTATGAC
GGCGATTAGAGAATAAGGAAAGTTATAATTATTTTATATTTTTCACAATG
ATCTGGTACTGACACTG
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