FG535507

EST Overview


Name	FG535507
Unique Name	FG535507
Type	EST
Organism	Pisum sativum (pea)
Sequence length	505

Libraries


Library Name	Type
LIBEST_023215 MeriZ Pisum sativum Shoot apical meristem ESTs	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of FG535507 vs. TrEMBL
Match: Q2HS37_MEDTR (Nucleic acid binding NABP OS=Medicago truncatula GN=MtrDRAFT_AC157503g12v2 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.630e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPHTT 139
            +LILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPHTT
Sbjct: 1002 ELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPHTT 1047

[Close]

BLAST of FG535507 vs. TrEMBL
Match: D7SKC0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024918001 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.540e-15
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPH 133
            +LILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIA QSPH
Sbjct:  315 ELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAIQSPH 358

[Close]

BLAST of FG535507 vs. TrEMBL
Match: A5BN72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024967 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.540e-15
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPH 133
            +LILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIA QSPH
Sbjct:  994 ELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAIQSPH 1037

[Close]

BLAST of FG535507 vs. TrEMBL
Match: B9GJ97_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_752121 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.067e-13
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPH 133
            +LIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGERR AAQS H
Sbjct: 1020 ELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRSAAQSLH 1063

[Close]

BLAST of FG535507 vs. TrEMBL
Match: D5AD88_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.378e-13
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPH 133
            +LILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRI  QS +
Sbjct:   37 ELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGTQSTY 80

[Close]

BLAST of FG535507 vs. TrEMBL
Match: C5XPQ8_SORBI (Putative uncharacterized protein Sb03g039600 OS=Sorghum bicolor GN=Sb03g039600 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.297e-13
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQ 124
            +LILSR+KVHLNALKKYTYGKHIVARVEKLVAAGERRIA Q
Sbjct: 1012 ELILSRVKVHLNALKKYTYGKHIVARVEKLVAAGERRIALQ 1052

[Close]

BLAST of FG535507 vs. TrEMBL
Match: Q9ZW02_ARATH (Putative pumilio/Mpt5 family RNA-binding protein OS=Arabidopsis thaliana GN=At2g29140 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.918e-13
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            +LIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGERR+A QS
Sbjct:  916 ELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQS 957

[Close]

BLAST of FG535507 vs. TrEMBL
Match: D7TLR0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_19.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016507001 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.918e-13
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            +LIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGERRI  QS
Sbjct:  829 ELILNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIGVQS 870

[Close]

BLAST of FG535507 vs. TrEMBL
Match: D7MVX2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_920647 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.918e-13
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            +LIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGERR+A QS
Sbjct:  455 ELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQS 496

[Close]

BLAST of FG535507 vs. TrEMBL
Match: D7LKN2_ARALY (Mpt5-3 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481833 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.918e-13
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            +LIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGERR+A QS
Sbjct:  925 ELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQS 966

[Close]

BLAST of FG535507 vs. TAIR peptide
Match: AT2G29140.1 (| Symbols: APUM3, PUM3 | pumilio 3 | chr2:12531392-12535060 FORWARD LENGTH=964)

HSP 1 Score: 77.0258 bits (188), Expect = 6.063e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            +LIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGERR+A QS
Sbjct:  916 ELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQS 957

[Close]

BLAST of FG535507 vs. TAIR peptide
Match: AT2G29190.2 (| Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972)

HSP 1 Score: 76.6406 bits (187), Expect = 7.918e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            +LIL RIKVHLNALKKYTYGKHIVARVEKLVAAGERR+A QS
Sbjct:  924 ELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQS 965

[Close]

BLAST of FG535507 vs. TAIR peptide
Match: AT2G29190.1 (| Symbols: APUM2, PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972)

HSP 1 Score: 76.6406 bits (187), Expect = 7.918e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            +LIL RIKVHLNALKKYTYGKHIVARVEKLVAAGERR+A QS
Sbjct:  924 ELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQS 965

[Close]

BLAST of FG535507 vs. TAIR peptide
Match: AT2G29200.1 (| Symbols: APUM1, PUM1 | pumilio 1 | chr2:12549483-12553185 REVERSE LENGTH=968)

HSP 1 Score: 73.9442 bits (180), Expect = 5.132e-14
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 2

Query:    2 QLILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            +LIL+RIKVHL ALKKYTYGKH+VAR+EKLVAAGERR+A QS
Sbjct:  920 ELILTRIKVHLTALKKYTYGKHVVARIEKLVAAGERRMALQS 961

[Close]

BLAST of FG535507 vs. TAIR peptide
Match: AT3G10360.1 (| Symbols: APUM4, PUM4 | pumilio 4 | chr3:3211276-3215144 REVERSE LENGTH=1003)

HSP 1 Score: 70.4774 bits (171), Expect = 5.674e-13
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 2

Query:    5 LILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQS 127
            LILSRIKVHLNALK+YTYGKHIVARVEKL+  GERRI   S
Sbjct:  955 LILSRIKVHLNALKRYTYGKHIVARVEKLITTGERRIGLSS 995

The following BLAST results are available for this feature:

BLAST of FG535507 vs. TrEMBL
BLAST of FG535507 vs. TAIR peptide

BLAST of FG535507 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q2HS37_MEDTR	4.630e-17	97.83	Nucleic acid binding NABP OS=Medicago truncatula G...	[more]
D7SKC0_VITVI	2.540e-15	95.45	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BN72_VITVI	2.540e-15	95.45	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9GJ97_POPTR	1.067e-13	90.91	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D5AD88_PICSI	2.378e-13	88.64	Putative uncharacterized protein OS=Picea sitchens...	[more]
C5XPQ8_SORBI	5.297e-13	92.68	Putative uncharacterized protein Sb03g039600 OS=So...	[more]
Q9ZW02_ARATH	6.918e-13	90.48	Putative pumilio/Mpt5 family RNA-binding protein O...	[more]
D7TLR0_VITVI	6.918e-13	90.48	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7MVX2_ARALY	6.918e-13	90.48	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
D7LKN2_ARALY	6.918e-13	90.48	Mpt5-3 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]

BLAST of FG535507 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G29140.1	6.063e-15	90.48	\| Symbols: APUM3, PUM3 \| pumilio 3 \| chr2:12531392...	[more]
AT2G29190.2	7.918e-15	90.48	\| Symbols: PUM2 \| pumilio 2 \| chr2:12544260-125480...	[more]
AT2G29190.1	7.918e-15	90.48	\| Symbols: APUM2, PUM2 \| pumilio 2 \| chr2:12544260...	[more]
AT2G29200.1	5.132e-14	83.33	\| Symbols: APUM1, PUM1 \| pumilio 1 \| chr2:12549483...	[more]
AT3G10360.1	5.674e-13	82.93	\| Symbols: APUM4, PUM4 \| pumilio 4 \| chr3:3211276-...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 3..30 score
None	No IPR available	SEG	seg	seg	coord: 24..47 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FG535507 ID=FG535507; Name=FG535507; organism=Pisum sativum; type=EST; length=505bp
TCAGCTAATTCTTTCGCGAATCAAAGTTCATTTGAATGCATTGAAAAAGT
ACACCTACGGAAAGCATATCGTAGCCCGTGTAGAGAAACTTGTTGCTGCT
GGAGAGAGGAGAATTGCTGCTCAGTCTCCTCATACTACTGCTTAGGAGTG
AGAGTAGAGAAAGAGTGTTGTCTGTACAGCTAACTGAGGCTAGTGTGATC
TCCTCCTGCATGCAAGAGTTATTTATGTTTATCTATCTATTTATCTGTCT
GATGGATAGTTGTGGCCGATTGGTAATAAAATTATCGGTTTGTAATTGAG
AACTGTACATTCTGTAGTTTATACATAGAATTTAAGTGAGGTGAGAGGTT
CAGATGTGTAATACTACTTACTACACCTCTGATGCCCGGTGGAAGGCAAG
GTGGAGGATGTAAAGTTTTTCATAAAACGGTGAGGTAGTTTATAAGCTGA
CGAGACTGTACAAAATGTTGCTATGTGAAGAGCTTTTTATGTTTTATCAT
TATTT

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