FG536942

EST Overview
NameFG536942
Unique NameFG536942
TypeEST
OrganismPisum sativum (pea)
Sequence length421
Libraries
Library NameType
LIBEST_023215 MeriZ Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of FG536942 vs. TrEMBL
Match: B9SI57_RICCO (Transcription initiation factor brf1, putative OS=Ricinus communis GN=RCOM_1320990 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.875e-21
Identity = 74/174 (42.53%), Postives = 95/174 (54.60%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKE------------------------------LAAAMPKSRKGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRFDLPSDNHSKFQSKVDDDQEDGELGSGN---YYEDGDKDWYNN----ENMDETY 413
            +KK IWE  NREYL EQ AKE                              +AAA+ KS+K  +Q++A +AKNS PAQSA+ A  Q +  KRLSSK+N+D L KLF DEP G ++PK++R +  SD   KF     DD+ D +LG GN     ED +   YNN    EN+DE Y
Sbjct:  440 FKKIIWEEMNREYLEEQAAKEAVAAAAKEAWEAKFKDCPEEMQAARELEAAVAAALAKSKKEKQQKRAAEAKNSVPAQSASEAARQMLTKKRLSSKINYDVLEKLF-DEP-GSKDPKKLRTESESDTDEKFPQ--TDDRND-DLGPGNKNEKEEDAEAYKYNNDQYDENVDEAY 608          
BLAST of FG536942 vs. TrEMBL
Match: D7TL42_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029946001 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.395e-17
Identity = 64/175 (36.57%), Postives = 87/175 (49.71%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKE------------------------------LAAAMPKSRKGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRFDLPSDN--------HSKFQSKVDDDQEDGELGSGNYYEDGDKDWYNNENMDETY 413
            +KK IWE  N+EYL EQ AKE                               AAA+ KSRK  +Q++A +AKN+ PAQ+AA AT Q +  KRLSSK+N+D L KLF+D    E NPK++R +  ++N        + K + + DD   + E G    YE      Y N+   E Y
Sbjct:  441 FKKIIWEAMNKEYLEEQAAKEAAAAAAKEAYEASFKDNPEGLKAAQELAAATAAAVAKSRKERQQKRAAEAKNTVPAQTAAEATRQMLTKKRLSSKINYDVLEKLFDDSVPSE-NPKKIRTESQTENNDHKAPISNKKLEPEEDDLAPEDEFG----YEGDTGGLYGNDLYGEGY 610          
BLAST of FG536942 vs. TrEMBL
Match: B9HPA7_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_876072 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.609e-12
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKELAAA------------------------------MPKSRKGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFED 236
            YKK IWE  NREYL EQ AKE AAA                              + KS+K  +Q++A +A+N  PA+SAA A  + +  KRL SK+N+D L KLFED
Sbjct:  377 YKKIIWEEMNREYLQEQAAKEAAAATLKKAWEENFKNCPEDLQAAKKLDAAVKADLAKSKKETQQKRASEARNLAPAKSAAEAVHRMLTKKRLGSKINYDVLEKLFED 484          
BLAST of FG536942 vs. TrEMBL
Match: Q0DJB2_ORYSJ (Os05g0305100 protein OS=Oryza sativa subsp. japonica GN=Os05g0305100 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.568e-12
Identity = 49/138 (35.51%), Postives = 66/138 (47.83%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKELAAAMPKSR-------KGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRFDLPSDNHSKFQSKVDDDQEDGELGSGNY-YEDGDKDWYNN 392
            YKK IWE  N+EYL EQ AK   AA   +R       K  ++R  +  KN+ PAQ+ A AT   +K KRL SK+N + + KL+  +            D  +D    F  +   D  DGE   G Y Y D + D Y +
Sbjct:  436 YKKIIWEEMNKEYLEEQAAKAALAAELAARGVVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYNTKDE----------DGKADKEMDFNDEYGQDTGDGETFEGGYDYPDYNYDGYGD 563          
BLAST of FG536942 vs. TrEMBL
Match: Q9SR27_ARATH (Putative transcription factor OS=Arabidopsis thaliana GN=F3L24.23 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.250e-11
Identity = 56/174 (32.18%), Postives = 82/174 (47.13%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKELA---------------------------AAMPKSRKGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRF------------DLPSDNHSKFQSKVDDDQEDGELGSGNYYEDGDKDWYNNENMDE 407
            YK   W   N++YL EQ AKE A                           A   KSRK  +Q++A++AKN+ P  +A  A  +T+  KRLSS +N+D L  LF D  A E++PKR +             ++ S+ H   +++ D+D+ED E G+   Y D   D+ N E   E
Sbjct:  415 YKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLF-DTSAPEKSPKRSKTETDIEKKKEENKEMKSNEHENGENE-DEDEEDEEEGNVESY-DMKTDFQNGEKFYE 585          
BLAST of FG536942 vs. TrEMBL
Match: Q0WVQ3_ARATH (Putative transcription factor OS=Arabidopsis thaliana GN=At3g09360 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.250e-11
Identity = 56/174 (32.18%), Postives = 82/174 (47.13%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKELA---------------------------AAMPKSRKGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRF------------DLPSDNHSKFQSKVDDDQEDGELGSGNYYEDGDKDWYNNENMDE 407
            YK   W   N++YL EQ AKE A                           A   KSRK  +Q++A++AKN+ P  +A  A  +T+  KRLSS +N+D L  LF D  A E++PKR +             ++ S+ H   +++ D+D+ED E G+   Y D   D+ N E   E
Sbjct:  419 YKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLF-DTSAPEKSPKRSKTETDIEKKKEENKEMKSNEHENGENE-DEDEEDEEEGNVESY-DMKTDFQNGEKFYE 589          
BLAST of FG536942 vs. TrEMBL
Match: B8AWC3_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19387 PE=4 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.250e-11
Identity = 49/136 (36.03%), Postives = 65/136 (47.79%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKELAAAMPKSR-------KGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRFDLPSDNHSKFQSKVDDDQEDGELGSGNY-YEDGDKDWY 386
            YKK IWE  N+EYL EQ AK   AA   +R       K  ++R  +  KN+ PAQ+ A AT   +K KRL SK+N + + KL+  +            D  +D    F  +   D  DGE   G Y Y D + D Y
Sbjct:  383 YKKIIWEEMNKEYLEEQAAKAALAAELAARGVVVEEGKRKRRRHNEDGKNATPAQTPAEATQNMLKRKRLGSKINDEAVNKLYNTKDE----------DGKADKEMDFNDEYGQDTGDGETFEGGYDYPDYNYDGY 508          
BLAST of FG536942 vs. TrEMBL
Match: D7L7U4_ARALY (RNA polymerase II transcription factor OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_317739 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.632e-11
Identity = 55/170 (32.35%), Postives = 83/170 (48.82%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKELA---------------------------AAMPKSRKGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRF--------DLPSDNHSKFQSKVDDDQEDGELGSGNYYEDGDKDWYNNENMDE 407
            YK   W   N++YL EQ AKE A                           A   KSRK  +Q++A++AKN+ P  +A  A  +T++ KRLS  +N+D L +LF D    E++PKR +         ++ S+ H K +++ D+ +ED E GS   Y D + D+ N E   E
Sbjct:  419 YKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAMEAVRRTLEKKRLSLVINYDVLEELF-DTSTAEKSPKRSKTETDIEKKKEVKSNEHEKGENE-DEAEEDEEEGSVESY-DMNTDFQNGEKFYE 585          
BLAST of FG536942 vs. TrEMBL
Match: B4FZ96_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.058e-10
Identity = 50/142 (35.21%), Postives = 70/142 (49.30%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKELAAAMPKSR-----KGMKQRQAQQ-AKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLF--EDEPAGERNPKRVRFDLPSDNHSKFQSKVDDDQEDGELGSGNYYEDGDKDWYNNENMD 404
            YKK IWE  N+EYL EQ AKE  AA   +R      G K+R+  +  K+S PA++ A ATC  +K K L SK+N   + +L+  +DE     N + + FD      +     VDD       G    Y+D   + YN  + D
Sbjct:  440 YKKIIWEEMNKEYLEEQAAKEALAAELAARGIDPEAGKKKRKRNEGTKSSTPAETPAEATCNMLKRKGLGSKINVGAVDELYKTKDEVGSANNEEEMEFDALFGPDNAAGETVDDGYNYNYGG----YDDDGAEGYNGLDDD 577          
BLAST of FG536942 vs. TrEMBL
Match: D7KVU5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_316772 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.357e-10
Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 3
Query:    6 KKKIWENSNREYLLEQVAKELA------------------AAMPKSRKGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRFDLPSDNHSKFQSKVDDDQEDGELGSGNYYEDGDKDWYNNENMDE 407
            K   W   NREY+ EQ  KE A                  AA+ KSRK  +Q++A++ KN+ P  +   A  +T++ KRL   +N+D L +LF+  P G+++ K+ R +  ++   K + ++D+D+E        Y  + D+ +Y +E  +E
Sbjct:  422 KTTAWNLQNREYVKEQAEKEAALKAANCPEDARNLVEASKAAVAKSRKEKRQKRAEEEKNAPPPATTMEAVRRTLERKRLGGLINYDVLEELFDTSP-GKKSQKKPRTETVTEK-EKEEHEIDEDEE------APYEMNTDEKFYEDEVEEE 565          
BLAST of FG536942 vs. TAIR peptide
Match: AT3G09360.1 (| Symbols: | Cyclin/Brf1-like TBP-binding protein | chr3:2873796-2878432 FORWARD LENGTH=604)

HSP 1 Score: 72.7886 bits (177), Expect = 7.541e-14
Identity = 56/174 (32.18%), Postives = 82/174 (47.13%), Query Frame = 3
Query:    3 YKKKIWENSNREYLLEQVAKELA---------------------------AAMPKSRKGMKQRQAQQAKNSEPAQSAAVATCQTVKTKRLSSKVNHDCLAKLFEDEPAGERNPKRVRF------------DLPSDNHSKFQSKVDDDQEDGELGSGNYYEDGDKDWYNNENMDE 407
            YK   W   N++YL EQ AKE A                           A   KSRK  +Q++A++AKN+ P  +A  A  +T+  KRLSS +N+D L  LF D  A E++PKR +             ++ S+ H   +++ D+D+ED E G+   Y D   D+ N E   E
Sbjct:  419 YKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLF-DTSAPEKSPKRSKTETDIEKKKEENKEMKSNEHENGENE-DEDEEDEEEGNVESY-DMKTDFQNGEKFYE 589          
The following BLAST results are available for this feature:
BLAST of FG536942 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9SI57_RICCO3.875e-2142.53Transcription initiation factor brf1, putative OS=... [more]
D7TL42_VITVI3.395e-1736.57Whole genome shotgun sequence of line PN40024, sca... [more]
B9HPA7_POPTR5.609e-1241.67Predicted protein (Fragment) OS=Populus trichocarp... [more]
Q0DJB2_ORYSJ9.568e-1235.51Os05g0305100 protein OS=Oryza sativa subsp. japoni... [more]
Q9SR27_ARATH1.250e-1132.18Putative transcription factor OS=Arabidopsis thali... [more]
Q0WVQ3_ARATH1.250e-1132.18Putative transcription factor OS=Arabidopsis thali... [more]
B8AWC3_ORYSI1.250e-1136.03Putative uncharacterized protein OS=Oryza sativa s... [more]
D7L7U4_ARALY1.632e-1132.35RNA polymerase II transcription factor OS=Arabidop... [more]
B4FZ96_MAIZE1.058e-1035.21Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
D7KVU5_ARALY2.357e-1029.61Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of FG536942 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G09360.17.541e-1432.18| Symbols: | Cyclin/Brf1-like TBP-binding protein... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011665Brf1-like TBP-bindingPFAMPF07741BRF1coord: 1..76
score: 5
NoneNo IPR availableSEGsegsegcoord: 34..48
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG536942 ID=FG536942; Name=FG536942; organism=Pisum sativum; type=EST; length=421bp
ATTACAAGAAGAAAATATGGGAAAACTCGAACCGCGAGTATCTTTTGGAG
CAAGTAGCCAAGGAATTAGCTGCAGCAATGCCAAAATCCAGAAAGGGAAT
GAAACAGAGACAAGCTCAACAAGCAAAAAATTCAGAGCCTGCTCAATCTG
CTGCAGTGGCCACTTGCCAAACGGTGAAAACAAAGAGGCTCAGTAGCAAA
GTCAATCACGATTGCCTGGCAAAGTTATTTGAAGATGAACCGGCAGGTGA
GCGTAATCCCAAGAGAGTACGATTTGATCTACCTTCGGATAATCACAGCA
AATTTCAGTCTAAGGTTGACGATGACCAAGAGGATGGTGAGCTGGGATCA
GGGAATTATTATGAGGATGGTGACAAAGATTGGTATAATAATGAAAATAT
GGATGAGACATATTACCCTGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0016563obsolete transcription activator activity
Vocabulary: Biological Process
TermDefinition
GO:0045941positive regulation of transcription
Vocabulary: INTERPRO
TermDefinition
IPR011665BRF1_TBP-bd_dom