FG538517
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FG538517 vs. TrEMBL
Match: B9SAN7_RICCO (DNA mismatch repair protein pms2, putative OS=Ricinus communis GN=RCOM_1177300 PE=4 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 8.514e-49 Identity = 93/121 (76.86%), Postives = 105/121 (86.78%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVRKRS 363 +APPG R+KLK+VP+SKN FG+EDVKDLI TL+D G +CSIIGSYK D +DSVCP RVR MLASRACRSS+MIGD LGRNEMQKILEHLA+L SPWNCPHGRPTMRHLVD+T + KRS Sbjct: 799 HAPPGHRFKLKAVPFSKNITFGVEDVKDLISTLADSQG--DCSIIGSYKMDKSDSVCPSRVRTMLASRACRSSVMIGDPLGRNEMQKILEHLADLNSPWNCPHGRPTMRHLVDMTSIYKRS 917
BLAST of FG538517 vs. TrEMBL
Match: D7U271_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027985001 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.739e-47 Identity = 89/119 (74.79%), Postives = 105/119 (88.24%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVRK 357 +APPG R+KLK+VP+SKN FG+EDVK+LI TL+DG G ECSI+G+YK D+ DS+CP RVRAMLASRACRSS+MIGD LGR EMQ+ILEHL++LKSPWNCPHGRPTMRHLVDLT + K Sbjct: 717 HAPPGQRFKLKAVPFSKNITFGVEDVKELISTLADGQG--ECSILGTYKMDTCDSICPSRVRAMLASRACRSSVMIGDPLGRKEMQRILEHLSDLKSPWNCPHGRPTMRHLVDLTTIYK 833
BLAST of FG538517 vs. TrEMBL
Match: A5APC0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023640 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.739e-47 Identity = 89/119 (74.79%), Postives = 105/119 (88.24%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVRK 357 +APPG R+KLK+VP+SKN FG+EDVK+LI TL+DG G ECSI+G+YK D+ DS+CP RVRAMLASRACRSS+MIGD LGR EMQ+ILEHL++LKSPWNCPHGRPTMRHLVDLT + K Sbjct: 3539 HAPPGQRFKLKAVPFSKNITFGVEDVKELISTLADGQG--ECSILGTYKMDTCDSICPSRVRAMLASRACRSSVMIGDPLGRKEMQRILEHLSDLKSPWNCPHGRPTMRHLVDLTTIYK 3655
BLAST of FG538517 vs. TrEMBL
Match: Q941I6_ARATH (DNA mismatch repair protein OS=Arabidopsis thaliana GN=PMS1 PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 5.711e-45 Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLT 345 +APPG ++L+++PYSKN FG+ED+KDLI TL GD HGECS+ SYK TDS+CP RVRAMLASRACRSS+MIGD L +NEMQKI+EHLA+L+SPWNCPHGRPTMRHLVDLT Sbjct: 787 SAPPGKHFRLRAIPYSKNITFGVEDLKDLISTL--GDNHGECSVASSYKTSKTDSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHLVDLT 899
BLAST of FG538517 vs. TrEMBL
Match: O81287_ARATH (AT4g02460 protein OS=Arabidopsis thaliana GN=T14P8.6 PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 5.711e-45 Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLT 345 +APPG ++L+++PYSKN FG+ED+KDLI TL GD HGECS+ SYK TDS+CP RVRAMLASRACRSS+MIGD L +NEMQKI+EHLA+L+SPWNCPHGRPTMRHLVDLT Sbjct: 643 SAPPGKHFRLRAIPYSKNITFGVEDLKDLISTL--GDNHGECSVASSYKTSKTDSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHLVDLT 755
BLAST of FG538517 vs. TrEMBL
Match: B9I9S8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_572706 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.459e-45 Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVRKRSE 366 +A PG +KLK+VP+SKN FG+EDVKDLI TL+D G ECSII YK D+ DSVCP RV AM ASRACRSS+MIGDALGRNEMQKILEHL +LKSPWNCPHGRPTMRHL+D++ + +R + Sbjct: 790 HALPGHHFKLKAVPFSKNITFGVEDVKDLISTLADSQG--ECSIISRYKMDTADSVCPSRVHAMFASRACRSSVMIGDALGRNEMQKILEHLVDLKSPWNCPHGRPTMRHLIDMSSIYERPD 909
BLAST of FG538517 vs. TrEMBL
Match: D7M3H5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490319 PE=4 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 8.247e-44 Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLT 345 +AP G ++L++VPYSKN FG+ED+KDLI TL GD HGECS + SYK TDS+CP RVRAMLASRACRSS+MIGD L +NEMQKI+EHLA+L+SPWNCPHGRPTMRHLVDLT Sbjct: 791 SAPAGKHFRLRAVPYSKNITFGVEDLKDLISTL--GDNHGECSGVSSYKTSKTDSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHLVDLT 903
BLAST of FG538517 vs. TrEMBL
Match: Q69L72_ORYSJ (Os02g0592300 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0016G10.12 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.710e-36 Identity = 75/118 (63.56%), Postives = 91/118 (77.12%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVR 354 +A P RY +K+VP+SKN FG +DVK+LI L+D G +CSII SYK D TDS+CP RVRAMLASRACR S MIGD L + EM+KIL++L L+SPWNCPHGRPTMRHL DL ++ Sbjct: 799 HASPCNRYFIKAVPFSKNITFGAQDVKELISMLADSQG--DCSIISSYKLDRTDSICPSRVRAMLASRACRMSTMIGDPLTKTEMKKILKNLTGLRSPWNCPHGRPTMRHLADLHAIK 914
BLAST of FG538517 vs. TrEMBL
Match: B8AEQ2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07875 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.710e-36 Identity = 75/118 (63.56%), Postives = 91/118 (77.12%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVR 354 +A P RY +K+VP+SKN FG +DVK+LI L+D G +CSII SYK D TDS+CP RVRAMLASRACR S MIGD L + EM+KIL++L L+SPWNCPHGRPTMRHL DL ++ Sbjct: 799 HASPCNRYFIKAVPFSKNITFGAQDVKELISMLADSQG--DCSIISSYKLDRTDSICPSRVRAMLASRACRMSTMIGDPLTKTEMKKILKNLTGLRSPWNCPHGRPTMRHLADLHAIK 914
BLAST of FG538517 vs. TrEMBL
Match: D5AB93_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.724e-33 Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHG--------ECSII--GSYKQ---DSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVRKR 360 NAPPG R+ L +VPYS+N FG+EDV++L+ L+D +CS + SYK+ S ++CP RVRAMLASRACRSS+MIGDAL + +M+ IL+HL+ L SPWNCPHGRPTMRHLVDLT V +R Sbjct: 18 NAPPGRRFLLSAVPYSQNITFGLEDVQELLSILADAPAPPTSEVSDSLDCSDVCSNSYKKAIPQSISALCPSRVRAMLASRACRSSVMIGDALCKKDMETILQHLSTLNSPWNCPHGRPTMRHLVDLTTVYRR 150
BLAST of FG538517 vs. SwissProt
Match: PMS2_HUMAN (Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.377e-22 Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVC-PPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDL 342 NAP R KL S+P SKN FG +DV +LI LSD G +C P RV+ M ASRACR S+MIG AL +EM+K++ H+ E+ PWNCPHGRPTMRH+ +L Sbjct: 758 NAPVTERAKLISLPTSKNWTFGPQDVDELIFMLSDSPG----------------VMCRPSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHIANL 856
BLAST of FG538517 vs. SwissProt
Match: PMS2_MOUSE (Mismatch repair endonuclease PMS2 OS=Mus musculus GN=Pms2 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.006e-22 Identity = 56/115 (48.70%), Postives = 71/115 (61.74%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVC-PPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDL 342 +AP R KL S+P SKN FG +D+ +LI LSD G +C P RVR M ASRACR S+MIG AL +EM+K++ H+ E+ PWNCPHGRPTMRH+ +L Sbjct: 755 DAPVTERAKLISLPTSKNWTFGPQDIDELIFMLSDSPG----------------VMCRPSRVRQMFASRACRKSVMIGTALNASEMKKLITHMGEMDHPWNCPHGRPTMRHVANL 853
BLAST of FG538517 vs. SwissProt
Match: PMS1_SCHPO (DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe GN=pms1 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.353e-20 Identity = 55/117 (47.01%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKV 351 N G R L SVP SKN +F D+ ++I LS+ H + S R+ MLAS+ACRSS+MIG AL +EM I+ HLAEL PWNCPHGRPTMRHL+ L + Sbjct: 693 NQRVGNRCTLLSVPTSKNVIFDTSDLLEIISVLSE---HPQIDPFSS------------RLERMLASKACRSSVMIGRALTISEMNTIVRHLAELSKPWNCPHGRPTMRHLLRLKDI 794
BLAST of FG538517 vs. SwissProt
Match: PMS1_YEAST (DNA mismatch repair protein PMS1 OS=Saccharomyces cerevisiae GN=PMS1 PE=1 SV=3) HSP 1 Score: 96.2857 bits (238), Expect = 1.425e-19 Identity = 48/110 (43.64%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 13 GCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDL 342 G R KL S+P SK T+F + D +LI + + G D++ ++R+M A RACRSSIMIG L + M +++ +L+EL PWNCPHGRPTMRHL++L Sbjct: 764 GSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRR------------DNIRCSKIRSMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMEL 861
BLAST of FG538517 vs. SwissProt
Match: PMS1_DICDI (Mismatch repair endonuclease pms1 OS=Dictyostelium discoideum GN=pms1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.334e-17 Identity = 51/126 (40.48%), Postives = 71/126 (56.35%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVRKRSELSMQ 378 +AP + KL + P FGI+D+ + I + E SI GS + PR+ ++LAS+ACR SIM+G L EM+ +L +L+ L +PW CPHGRPTMRHLVDL+ K + Q Sbjct: 899 DAPTRFKIKLSAFPIIHGQSFGIKDIYEWIFMIK------ESSIPGSVNKI-------PRLNSLLASKACRKSIMVGTTLTHKEMKDVLNNLSTLDNPWCCPHGRPTMRHLVDLSIKDKLKQQQQQ 1011
BLAST of FG538517 vs. SwissProt
Match: MUTL_THEAQ (DNA mismatch repair protein mutL OS=Thermus aquaticus GN=mutL PE=3 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 8.110e-7 Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1 Query: 178 RVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVRK 357 R+R +LA AC ++ G L R E Q +L+ L ++PW CPHGRP + HL + +R+ Sbjct: 448 RLRGLLARLACLPALKAGHPLARAEGQALLDALLACETPWVCPHGRPVLLHLKEEDLIRR 507
BLAST of FG538517 vs. TAIR peptide
Match: AT4G02460.1 (| Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923) HSP 1 Score: 184.496 bits (467), Expect = 4.095e-47 Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = 1 Query: 1 NAPPGCRYKLKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLT 345 +APPG ++L+++PYSKN FG+ED+KDLI TL GD HGECS+ SYK TDS+CP RVRAMLASRACRSS+MIGD L +NEMQKI+EHLA+L+SPWNCPHGRPTMRHLVDLT Sbjct: 787 SAPPGKHFRLRAIPYSKNITFGVEDLKDLISTL--GDNHGECSVASSYKTSKTDSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHLVDLT 899
BLAST of FG538517 vs. TAIR peptide
Match: AT4G35520.1 (| Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 | chr4:16865488-16871527 FORWARD LENGTH=1169) HSP 1 Score: 56.6102 bits (135), Expect = 1.288e-8 Identity = 36/111 (32.43%), Postives = 52/111 (46.85%), Query Frame = 1 Query: 28 LKSVPYSKNTMFGIEDVKDLIPTLSDGDGHGECSIIGSYKQDSTDSVCPPRVRAMLASRACRSSIMIGDALGRNEMQKILEHLAELKSPWNCPHGRPTMRHLVDLTKVRKR 360 L +VP D+ + + L+D DG S PP V +L S+ACR +IM GD+L +E I++ L + + C HGRPT LVDL + K+ Sbjct: 1042 LNAVPCILGVNLSDVDLLEFLQQLADTDG---------------SSTIPPSVLRVLNSKACRGAIMFGDSLLPSECSLIIDGLKQTSLCFQCAHGRPTTVPLVDLKALHKQ 1137 The following BLAST results are available for this feature:
BLAST of FG538517 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of FG538517 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 6
BLAST of FG538517 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FG538517 ID=FG538517; Name=FG538517; organism=Pisum sativum; type=EST; length=635bpback to top Annotated Terms
The
following terms have been associated with
this EST:
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