AM162162
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of AM162162 vs. TrEMBL
Match: B9N469_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_268246 PE=4 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 8.845e-13 Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128 LSVLGVENNQLYELRLQ PENVFVEEEN LR+VM+SFR NKI Sbjct: 171 LSVLGVENNQLYELRLQTPENVFVEEENDLRKVMDSFRVNKI 212
BLAST of AM162162 vs. TrEMBL
Match: B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.970e-12 Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128 LSVLGVENN+LYELRLQ PENVFVEEEN LR+VMESFR NK+ Sbjct: 224 LSVLGVENNRLYELRLQTPENVFVEEENDLRQVMESFRVNKV 265
BLAST of AM162162 vs. TrEMBL
Match: A9PDI9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1096006 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.488e-12 Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128 +SVLGVENN+LYELRLQ PENVFVEEEN LR+VM+SFR NK+ Sbjct: 222 MSVLGVENNRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 263
BLAST of AM162162 vs. TrEMBL
Match: D7UA58_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_60.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031268001 PE=4 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.853e-11 Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125 LSVLGVENN+LYELRLQ PE+VF+EEEN+LR+VM+SFR NK Sbjct: 205 LSVLGVENNRLYELRLQTPESVFLEEENELRQVMDSFRVNK 245
BLAST of AM162162 vs. TrEMBL
Match: A3BIK7_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_23828 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.561e-9 Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKIL 131 LSVLGVEN +LYELRLQ PE VF EEE LRRVM+SFR NK L Sbjct: 207 LSVLGVENKRLYELRLQSPEQVFKEEEGDLRRVMDSFRVNKTL 249
BLAST of AM162162 vs. TrEMBL
Match: A2YK73_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_25622 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 1.561e-9 Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKIL 131 LSVLGVEN +LYELRLQ PE VF EEE LRRVM+SFR NK L Sbjct: 207 LSVLGVENKRLYELRLQSPEQVFKEEEGDLRRVMDSFRVNKTL 249
BLAST of AM162162 vs. TrEMBL
Match: Q6YXJ1_ORYSJ (Putative Thylakoid lumenal 21.5 kDa protein, chloroplast OS=Oryza sativa subsp. japonica GN=B1029H08.30 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.478e-9 Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125 LSVLGVEN +LYELRLQ PE VF EEE LRRVM+SFR NK Sbjct: 207 LSVLGVENKRLYELRLQSPEQVFKEEEGDLRRVMDSFRVNK 247
BLAST of AM162162 vs. TrEMBL
Match: Q2QNI4_ORYSJ (Os12g0564400 protein OS=Oryza sativa subsp. japonica GN=Os12g0564400 PE=2 SV=2) HSP 1 Score: 64.6994 bits (156), Expect = 3.478e-9 Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125 LSVLGVEN +LYELRLQ PE VF EEE LRRVM+SFR NK Sbjct: 207 LSVLGVENKRLYELRLQSPEKVFKEEEGDLRRVMDSFRVNK 247
BLAST of AM162162 vs. TrEMBL
Match: Q0D797_ORYSJ (Os07g0275100 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os07g0275100 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.478e-9 Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125 LSVLGVEN +LYELRLQ PE VF EEE LRRVM+SFR NK Sbjct: 38 LSVLGVENKRLYELRLQSPEQVFKEEEGDLRRVMDSFRVNK 78
BLAST of AM162162 vs. TrEMBL
Match: A3CIH3_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36525 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.478e-9 Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125 LSVLGVEN +LYELRLQ PE VF EEE LRRVM+SFR NK Sbjct: 162 LSVLGVENKRLYELRLQSPEKVFKEEEGDLRRVMDSFRVNK 202
BLAST of AM162162 vs. SwissProt
Match: PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 8.421e-10 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128 L+VLGVEN++LY +RLQ PE VF+EEE LRRVM+SFR KI Sbjct: 246 LAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287
BLAST of AM162162 vs. TAIR peptide
Match: AT4G15510.3 (| Symbols: | Photosystem II reaction center PsbP family protein | chr4:8861351-8862529 FORWARD LENGTH=205) HSP 1 Score: 62.3882 bits (150), Expect = 6.718e-11 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128 L+VLGVEN++LY +RLQ PE VF+EEE LRRVM+SFR KI Sbjct: 164 LAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 205
BLAST of AM162162 vs. TAIR peptide
Match: AT4G15510.1 (| Symbols: | Photosystem II reaction center PsbP family protein | chr4:8860701-8862529 FORWARD LENGTH=287) HSP 1 Score: 62.3882 bits (150), Expect = 6.718e-11 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3 Query: 3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128 L+VLGVEN++LY +RLQ PE VF+EEE LRRVM+SFR KI Sbjct: 246 LAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287 The following BLAST results are available for this feature:
BLAST of AM162162 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of AM162162 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 1
BLAST of AM162162 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >AM162162 ID=AM162162; Name=AM162162; organism=Pisum sativum; type=EST; length=360bpback to top |