AM162162

EST Overview
NameAM162162
Unique NameAM162162
TypeEST
OrganismPisum sativum (pea)
Sequence length360
Libraries
Library NameType
LIBEST_019360 Pisum sativum leaf vegetativecdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
Homology
BLAST of AM162162 vs. TrEMBL
Match: B9N469_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_268246 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.845e-13
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128
            LSVLGVENNQLYELRLQ PENVFVEEEN LR+VM+SFR NKI
Sbjct:  171 LSVLGVENNQLYELRLQTPENVFVEEENDLRKVMDSFRVNKI 212          
BLAST of AM162162 vs. TrEMBL
Match: B9RFL8_RICCO (Thylakoid lumenal 21.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1435730 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.970e-12
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128
            LSVLGVENN+LYELRLQ PENVFVEEEN LR+VMESFR NK+
Sbjct:  224 LSVLGVENNRLYELRLQTPENVFVEEENDLRQVMESFRVNKV 265          
BLAST of AM162162 vs. TrEMBL
Match: A9PDI9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1096006 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.488e-12
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128
            +SVLGVENN+LYELRLQ PENVFVEEEN LR+VM+SFR NK+
Sbjct:  222 MSVLGVENNRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 263          
BLAST of AM162162 vs. TrEMBL
Match: D7UA58_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_60.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031268001 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.853e-11
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125
            LSVLGVENN+LYELRLQ PE+VF+EEEN+LR+VM+SFR NK
Sbjct:  205 LSVLGVENNRLYELRLQTPESVFLEEENELRQVMDSFRVNK 245          
BLAST of AM162162 vs. TrEMBL
Match: A3BIK7_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_23828 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.561e-9
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKIL 131
            LSVLGVEN +LYELRLQ PE VF EEE  LRRVM+SFR NK L
Sbjct:  207 LSVLGVENKRLYELRLQSPEQVFKEEEGDLRRVMDSFRVNKTL 249          
BLAST of AM162162 vs. TrEMBL
Match: A2YK73_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_25622 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.561e-9
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKIL 131
            LSVLGVEN +LYELRLQ PE VF EEE  LRRVM+SFR NK L
Sbjct:  207 LSVLGVENKRLYELRLQSPEQVFKEEEGDLRRVMDSFRVNKTL 249          
BLAST of AM162162 vs. TrEMBL
Match: Q6YXJ1_ORYSJ (Putative Thylakoid lumenal 21.5 kDa protein, chloroplast OS=Oryza sativa subsp. japonica GN=B1029H08.30 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.478e-9
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125
            LSVLGVEN +LYELRLQ PE VF EEE  LRRVM+SFR NK
Sbjct:  207 LSVLGVENKRLYELRLQSPEQVFKEEEGDLRRVMDSFRVNK 247          
BLAST of AM162162 vs. TrEMBL
Match: Q2QNI4_ORYSJ (Os12g0564400 protein OS=Oryza sativa subsp. japonica GN=Os12g0564400 PE=2 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 3.478e-9
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125
            LSVLGVEN +LYELRLQ PE VF EEE  LRRVM+SFR NK
Sbjct:  207 LSVLGVENKRLYELRLQSPEKVFKEEEGDLRRVMDSFRVNK 247          
BLAST of AM162162 vs. TrEMBL
Match: Q0D797_ORYSJ (Os07g0275100 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os07g0275100 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.478e-9
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125
            LSVLGVEN +LYELRLQ PE VF EEE  LRRVM+SFR NK
Sbjct:   38 LSVLGVENKRLYELRLQSPEQVFKEEEGDLRRVMDSFRVNK 78          
BLAST of AM162162 vs. TrEMBL
Match: A3CIH3_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36525 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.478e-9
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANK 125
            LSVLGVEN +LYELRLQ PE VF EEE  LRRVM+SFR NK
Sbjct:  162 LSVLGVENKRLYELRLQSPEKVFKEEEGDLRRVMDSFRVNK 202          
BLAST of AM162162 vs. SwissProt
Match: PPD1_ARATH (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 8.421e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128
            L+VLGVEN++LY +RLQ PE VF+EEE  LRRVM+SFR  KI
Sbjct:  246 LAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287          
BLAST of AM162162 vs. TAIR peptide
Match: AT4G15510.3 (| Symbols: | Photosystem II reaction center PsbP family protein | chr4:8861351-8862529 FORWARD LENGTH=205)

HSP 1 Score: 62.3882 bits (150), Expect = 6.718e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128
            L+VLGVEN++LY +RLQ PE VF+EEE  LRRVM+SFR  KI
Sbjct:  164 LAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 205          
BLAST of AM162162 vs. TAIR peptide
Match: AT4G15510.1 (| Symbols: | Photosystem II reaction center PsbP family protein | chr4:8860701-8862529 FORWARD LENGTH=287)

HSP 1 Score: 62.3882 bits (150), Expect = 6.718e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3
Query:    3 LSVLGVENNQLYELRLQVPENVFVEEENQLRRVMESFRANKI 128
            L+VLGVEN++LY +RLQ PE VF+EEE  LRRVM+SFR  KI
Sbjct:  246 LAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287          
The following BLAST results are available for this feature:
BLAST of AM162162 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9N469_POPTR8.845e-1388.10Predicted protein (Fragment) OS=Populus trichocarp... [more]
B9RFL8_RICCO1.970e-1285.71Thylakoid lumenal 21.5 kDa protein, chloroplast, p... [more]
A9PDI9_POPTR7.488e-1280.95Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7UA58_VITVI4.853e-1180.49Whole genome shotgun sequence of line PN40024, sca... [more]
A3BIK7_ORYSJ1.561e-976.74Putative uncharacterized protein OS=Oryza sativa s... [more]
A2YK73_ORYSI1.561e-976.74Putative uncharacterized protein OS=Oryza sativa s... [more]
Q6YXJ1_ORYSJ3.478e-978.05Putative Thylakoid lumenal 21.5 kDa protein, chlor... [more]
Q2QNI4_ORYSJ3.478e-978.05Os12g0564400 protein OS=Oryza sativa subsp. japoni... [more]
Q0D797_ORYSJ3.478e-978.05Os07g0275100 protein (Fragment) OS=Oryza sativa su... [more]
A3CIH3_ORYSJ3.478e-978.05Putative uncharacterized protein OS=Oryza sativa s... [more]
back to top
BLAST of AM162162 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
PPD1_ARATH8.421e-1069.05PsbP domain-containing protein 1, chloroplastic OS... [more]
back to top
BLAST of AM162162 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G15510.36.718e-1169.05| Symbols: | Photosystem II reaction center PsbP ... [more]
AT4G15510.16.718e-1169.05| Symbols: | Photosystem II reaction center PsbP ... [more]
back to top
Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>AM162162 ID=AM162162; Name=AM162162; organism=Pisum sativum; type=EST; length=360bp
ACTTGTCTGTTCTAGGAGTTGAGAACAATCAACTGTATGAGTTGAGGTTA
CAGGTGCCTGAAAATGTGTTTGTGGAGGAAGAGAATCAGCTTCGTCGAGT
CATGGAGTCGTTTCGGGCGAATAAGATTCTTCGTTAGAACTAAGAAAATG
TGTATGATGTTGTCTTTGTTATTGATGAGTTGGTCGAGATAGCTGTTGAT
GATGTTGGTAACTGAAGTCAGCTTGATTAAACTCTATATAGAAATAGATG
AAAGTGTGGATTGAGGTGGTGATGAGAAAGATTCATTCATTTTATTGTTG
ATTTGTTTTGTTATAAGTTCAACTTATAAGATTGAGATGAGATATGGTAA
TGATAGCAGT
back to top