EX569539

EST Overview
NameEX569539
Unique NameEX569539
TypeEST
OrganismPisum sativum (pea)
Sequence length453
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of EX569539 vs. TrEMBL
Match: B9GUI0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_816318 PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.303e-24
Identity = 55/96 (57.29%), Postives = 67/96 (69.79%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSR--IENYMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            QVQ+LNKSVWN+N           AH +   +   +N +P+SAASFL+ T  SD K E  I+GWD+VEHPT PPPPSQ ED+EHWTRAMFIDA +K
Sbjct:  380 QVQKLNKSVWNVNSAISSSALLESAHALQLMKNTSDNNLPNSAASFLFATGISDGKNESFIDGWDLVEHPTFPPPPSQVEDIEHWTRAMFIDATKK 475          
BLAST of EX569539 vs. TrEMBL
Match: B9T6K6_RICCO (DNA-directed RNA polymerase II, putative OS=Ricinus communis GN=RCOM_0261650 PE=4 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.548e-22
Identity = 54/97 (55.67%), Postives = 67/97 (69.07%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSRI--ENYMPSSAASFLYPTDSSDR-KRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            QVQ+LNKSVWN+N           AH    ++   +N + +SA SFL+  + SD  K E LI+GWD+VEHPT PPPPSQ+EDVEHWTRAMFIDA +K
Sbjct:  382 QVQKLNKSVWNVNSIISSSTLMESAHAPHLTKNINDNNLRNSATSFLFANEISDAGKNESLIDGWDLVEHPTFPPPPSQTEDVEHWTRAMFIDATKK 478          
BLAST of EX569539 vs. TrEMBL
Match: Q9M0T0_ARATH (Putative uncharacterized protein AT4g08540 OS=Arabidopsis thaliana GN=AT4g08540 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.811e-19
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSRIENYMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            Q QQLNKS+WN +           AH +P +   N  P+S AS+L  T+ S RK   +  GWD+VEHP  PPPPSQSEDVEHWTRAMFIDAK+K
Sbjct:  357 QAQQLNKSIWNAHSVISSSLLES-AH-LPRNTSYNQDPNSPASYLSATELSTRKNNDM-NGWDLVEHPKYPPPPSQSEDVEHWTRAMFIDAKKK 447          
BLAST of EX569539 vs. TrEMBL
Match: Q8VYD5_ARATH (Putative uncharacterized protein At4g08540 OS=Arabidopsis thaliana GN=At4g08540 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.811e-19
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSRIENYMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            Q QQLNKS+WN +           AH +P +   N  P+S AS+L  T+ S RK   +  GWD+VEHP  PPPPSQSEDVEHWTRAMFIDAK+K
Sbjct:  383 QAQQLNKSIWNAHSVISSSLLES-AH-LPRNTSYNQDPNSPASYLSATELSTRKNNDM-NGWDLVEHPKYPPPPSQSEDVEHWTRAMFIDAKKK 473          
BLAST of EX569539 vs. TrEMBL
Match: Q8H1E1_ARATH (Putative uncharacterized protein At4g08540 OS=Arabidopsis thaliana GN=At4g08540 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.811e-19
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSRIENYMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            Q QQLNKS+WN +           AH +P +   N  P+S AS+L  T+ S RK   +  GWD+VEHP  PPPPSQSEDVEHWTRAMFIDAK+K
Sbjct:  383 QAQQLNKSIWNAHSVISSSLLES-AH-LPRNTSYNQDPNSPASYLSATELSTRKNNDM-NGWDLVEHPKYPPPPSQSEDVEHWTRAMFIDAKKK 473          
BLAST of EX569539 vs. TrEMBL
Match: C0Z3G8_ARATH (AT4G08540 protein OS=Arabidopsis thaliana GN=AT4G08540 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.811e-19
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSRIENYMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            Q QQLNKS+WN +           AH +P +   N  P+S AS+L  T+ S RK   +  GWD+VEHP  PPPPSQSEDVEHWTRAMFIDAK+K
Sbjct:  176 QAQQLNKSIWNAHSVISSSLLES-AH-LPRNTSYNQDPNSPASYLSATELSTRKNNDM-NGWDLVEHPKYPPPPSQSEDVEHWTRAMFIDAKKK 266          
BLAST of EX569539 vs. TrEMBL
Match: D7M8G2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_351968 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.263e-19
Identity = 51/94 (54.26%), Postives = 60/94 (63.83%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSRIENYMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            Q  QLNKS+WN +           AH    +   N  P+SAAS+L  + SS RK   +  GWD+VEHP  PPPPSQSEDVEHWTRAMFIDAK+K
Sbjct:  356 QAPQLNKSIWNAHSVISSSLLES-AHLPERNASYNQDPNSAASYLSASASSTRKNNDM-NGWDLVEHPKYPPPPSQSEDVEHWTRAMFIDAKKK 447          
BLAST of EX569539 vs. TrEMBL
Match: O81467_ARATH (T15F16.11 protein OS=Arabidopsis thaliana GN=T15F16.11 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.596e-14
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSRIENYMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFI 268
            Q QQLNKS+WN +           AH    +   N  P+S AS+L  T+ S RK   +  GWD+VEHP  PPPPSQSEDVEHWT  M +
Sbjct:   99 QAQQLNKSIWNAHSVISSSLLES-AHLPQRNTSYNQDPNSPASYLSATELSTRKNNDM-NGWDLVEHPKYPPPPSQSEDVEHWTHLMTV 185          
BLAST of EX569539 vs. TrEMBL
Match: A9TM71_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_223567 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.071e-10
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  107 YMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKR 280
            Y  S+ + F+   ++     +  ++GW++VEHP LPPPPS SEDVEHWTRAMFIDA +
Sbjct:  411 YDVSTESEFM---EAGPNSSDSTVDGWNLVEHPRLPPPPSNSEDVEHWTRAMFIDATK 465          
BLAST of EX569539 vs. TrEMBL
Match: C5X2K5_SORBI (Putative uncharacterized protein Sb02g039900 OS=Sorghum bicolor GN=Sb02g039900 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.385e-10
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAH--CVPTSRIENYMPSSAASFLYPTD--SSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            QVQQLN+SVW  +           +    +  S ++N + +S  SFLY           + +++GWD+VE   LPPPPSQ EDV  W RAM+   K+K
Sbjct:  381 QVQQLNRSVWKASSAISSDSSFMDSMHTAIMPSTLDNLLQNSNESFLYTGKLVKHGGVPDSILDGWDLVEREVLPPPPSQVEDVAQWERAMYAGTKKK 478          
BLAST of EX569539 vs. TAIR peptide
Match: AT4G08540.1 (| Symbols: | DNA-directed RNA polymerase II protein | chr4:5433760-5436326 FORWARD LENGTH=473)

HSP 1 Score: 98.2117 bits (243), Expect = 2.012e-21
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 2
Query:    2 QVQQLNKSVWNMNXXXXXXXXXXXAHCVPTSRIENYMPSSAASFLYPTDSSDRKRECLIEGWDIVEHPTLPPPPSQSEDVEHWTRAMFIDAKRK 283
            Q QQLNKS+WN +           AH +P +   N  P+S AS+L  T+ S RK   +  GWD+VEHP  PPPPSQSEDVEHWTRAMFIDAK+K
Sbjct:  383 QAQQLNKSIWNAHSVISSSLLES-AH-LPRNTSYNQDPNSPASYLSATELSTRKNNDM-NGWDLVEHPKYPPPPSQSEDVEHWTRAMFIDAKKK 473          
The following BLAST results are available for this feature:
BLAST of EX569539 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9GUI0_POPTR1.303e-2457.29Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9T6K6_RICCO3.548e-2255.67DNA-directed RNA polymerase II, putative OS=Ricinu... [more]
Q9M0T0_ARATH2.811e-1955.32Putative uncharacterized protein AT4g08540 OS=Arab... [more]
Q8VYD5_ARATH2.811e-1955.32Putative uncharacterized protein At4g08540 OS=Arab... [more]
Q8H1E1_ARATH2.811e-1955.32Putative uncharacterized protein At4g08540 OS=Arab... [more]
C0Z3G8_ARATH2.811e-1955.32AT4G08540 protein OS=Arabidopsis thaliana GN=AT4G0... [more]
D7M8G2_ARALY6.263e-1954.26Putative uncharacterized protein OS=Arabidopsis ly... [more]
O81467_ARATH1.596e-1448.31T15F16.11 protein OS=Arabidopsis thaliana GN=T15F1... [more]
A9TM71_PHYPA1.071e-1051.72Predicted protein OS=Physcomitrella patens subsp. ... [more]
C5X2K5_SORBI2.385e-1037.76Putative uncharacterized protein Sb02g039900 OS=So... [more]
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BLAST of EX569539 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G08540.12.012e-2155.32| Symbols: | DNA-directed RNA polymerase II prote... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 14..24
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX569539 ID=EX569539; Name=EX569539; organism=Pisum sativum; type=EST; length=453bp
ACAAGTTCAACAATTGAACAAATCTGTATGGAATATGAACTCTGCTATTT
CGTCATCTACATCGCTAGAAAGTGCACATTGTGTGCCCACATCGAGAATT
GAGAATTATATGCCGAGTTCTGCTGCTAGTTTTCTTTATCCTACTGATTC
ATCTGATCGAAAACGTGAGTGCCTGATTGAAGGGTGGGATATCGTTGAAC
ATCCCACTCTTCCTCCTCCGCCATCACAGAGCGAGGATGTTGAGCACTGG
ACTCGAGCCATGTTCATAGATGCTAAAAGGAAATGATCTTCGTCTGCAAC
AGACTTCTGCTTTCTGTTGAACTGTTGAAGGGAGTGAAATCTGACTTAAG
ATTCTGGAAACTGTATAGGTAAATCATCTGGAGCATTTTAGTTTCGTTTC
ATCAATTTCAGGGCTGTATAAAATAGATAATAGGACAATGAGAATTGTTA
GTA
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