GH720730

EST Overview
NameGH720730
Unique NameGH720730
TypeEST
OrganismPisum sativum (pea)
Sequence length352
Libraries
Library NameType
LIBEST_024272 BACIcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
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BLAST of GH720730 vs. TrEMBL
Match: Q9C9T6_ARATH (Putative RING zinc finger protein; 69105-67310 OS=Arabidopsis thaliana GN=At1g73760 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.860e-7
Identity = 48/130 (36.92%), Postives = 55/130 (42.31%), Query Frame = -2 
Query:   25 RGRG-TAGASQQVSVPAVIRASADWTHQGXXXXXXXXKG--------NTAXXXXXXXXXXXXXSTCVDFQDVWCGPGID------AAASVDCVVS---KKNVSSRAKIDLEKI-----THREPSSSFRRR 345
            RG G T  ASQQVSVPAVIR+SADW            K         N                 C    DVWCGPG+          S+D VVS   ++N+  R KID +K       HRE SSS   R
Sbjct:   73 RGLGCTTSASQQVSVPAVIRSSADWDASNFKIKKTKKKNKNKGSSSYNGGSIKILSEASTSSSVACAAIPDVWCGPGVGFSTDAVVGGSIDTVVSDPPRRNIPVRRKIDGDKTNSNSNNHREGSSSLLPR 202
[Close]
BLAST of GH720730 vs. TAIR peptide
Match: AT1G73760.1 (| Symbols: | RING/U-box superfamily protein | chr1:27739366-27741161 REVERSE LENGTH=367)

HSP 1 Score: 58.9214 bits (141), Expect = 7.218e-10
Identity = 48/130 (36.92%), Postives = 55/130 (42.31%), Query Frame = -2 
Query:   25 RGRG-TAGASQQVSVPAVIRASADWTHQGXXXXXXXXKG--------NTAXXXXXXXXXXXXXSTCVDFQDVWCGPGID------AAASVDCVVS---KKNVSSRAKIDLEKI-----THREPSSSFRRR 345
            RG G T  ASQQVSVPAVIR+SADW            K         N                 C    DVWCGPG+          S+D VVS   ++N+  R KID +K       HRE SSS   R
Sbjct:   73 RGLGCTTSASQQVSVPAVIRSSADWDASNFKIKKTKKKNKNKGSSSYNGGSIKILSEASTSSSVACAAIPDVWCGPGVGFSTDAVVGGSIDTVVSDPPRRNIPVRRKIDGDKTNSNSNNHREGSSSLLPR 202
The following BLAST results are available for this feature:
BLAST of GH720730 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
Q9C9T6_ARATH1.860e-736.92Putative RING zinc finger protein; 69105-67310 OS=... [more]
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BLAST of GH720730 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G73760.17.218e-1036.92| Symbols: | RING/U-box superfamily protein | chr... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 1..18
score: NAcoord: 25..34
score: NAcoord: 63..71
score
NoneNo IPR availableSEGsegsegcoord: 31..39
score: NAcoord: 44..57
score
NoneNo IPR availableSEGsegsegcoord: 50..61
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GH720730 ID=GH720730; Name=GH720730; organism=Pisum sativum; type=EST; length=352bp
TTCGAGCGGCCGCCCGGGGCAGGTACGCCTTCGGAATGAAGATGAAGGCT
CTCGGTGAGTTATCTTTTCCAAATCAATCTTAGCCCTTGAAGAGACATTC
TTCTTTGAAACAACACAATCAACAGAAGCAGCAGCATCAATTCCAGGTCC
ACACCAAACATCTTGAAAATCAACACAGGTAGAAGAAGAACCTTCATTAC
TACTATTTTTGCTACTCCCTCCTGCAGTATTCCCCTTATGCTTCTTTTTT
CTGGTTTTCTTCCCTTGATGAGTCCAATCTGCAGAAGCACGAATCACCGC
CGGCACCGACACCTGCTGAGAGGCACCGGCAGTACCTCGGCCGCGACCAC
GC
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