FG531612

EST Overview
NameFG531612
Unique NameFG531612
TypeEST
OrganismPisum sativum (pea)
Sequence length440
Libraries
Library NameType
LIBEST_023217 MeriP Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
KEGG analysis for Pisum sativum unigene v12011-01-05
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of FG531612 vs. TrEMBL
Match: B9MSX9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_589271 PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.677e-30
Identity = 71/134 (52.99%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    1 KARMKVEKKVSASQIAFGSGGQSAHHKPYGIGSKTN---GIESSAFVDANG---KEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKK 384
            K ++  EKKV    IAFG G  +A  KP+   S  N   G  S+   DA G   KEY EPWD YS+YP++LP+R+PYSGN   LD+EEFGE +E+ TYDEN+ NSA ELGL+EEN E   +F++LPP  PMIK+
Sbjct:   55 KQKITNEKKVQKLDIAFGPG--AAATKPFPSWSTINRDQGSSSNGNADAPGPREKEYIEPWDYYSNYPVSLPMRRPYSGNSAILDEEEFGEVSEAATYDENSTNSAVELGLMEENVEASMLFVQLPPTMPMIKR 186          
BLAST of FG531612 vs. TrEMBL
Match: B9RRC4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0712300 PE=4 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.566e-30
Identity = 77/156 (49.36%), Postives = 95/156 (60.90%), Query Frame = 1
Query:    1 KARMKVEKKVSASQIAFGSGGQSAHHKPYGI-----------GSKTNGIESSAFVDANGKEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKK-PDAD-VKVNSKRPAKL 429
            +A+ K EKKV ASQIAFG G  S   K Y             GS  NG   S+  +   KEY EPW+ YS YP+ LPLR+PYSGNP  L+ EEFGEA+++  YDEN+ NSA  LGL+EEN E    F++LPP  PMIK+   AD  KV  ++  KL
Sbjct:   55 RAKPKAEKKVQASQIAFGFGAASPSIKSYAAPKVGAAVNHNQGSSVNGGAYSS--ELGEKEYIEPWNYYSYYPVTLPLRRPYSGNPATLNAEEFGEASDTSEYDENSTNSAINLGLMEENVEANMFFLQLPPTVPMIKRLATADGHKVKEEKTCKL 208          
BLAST of FG531612 vs. TrEMBL
Match: D7TCG5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00015098001 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.865e-29
Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = 1
Query:   28 VSASQIAFGSGGQSAHHKPYGIGSKTNGIESSAFVD------------ANGKEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKK 384
            ++ +Q+AFG GG SA  + YG  +      SS + D            ++ KEYKEPWD Y+ YP+ LPLR+PYSGNPE LD+EEFGEA+ES  YDEN+ N A ELGL++EN E   +F++LP   PMIK+
Sbjct:   78 MAPTQVAFGYGGASASIRSYG--TPRGATNSSRYQDPASGGGLYGSGLSDHKEYKEPWDYYTYYPVTLPLRRPYSGNPELLDEEEFGEASESTAYDENSTNPAMELGLMDENQEASMLFLQLPATMPMIKQ 206          
BLAST of FG531612 vs. TrEMBL
Match: B4FTW1_MAIZE (DNA binding protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.806e-22
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   19 EKKVSASQIAFGSGGQSAHHKPYGIGSKTNGIESSAFVDANGKEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKKPDADVKVNSKRPAK 426
            EK  S +Q+AFG G  S + + + +  K +    ++ +    KEY EPWD   DYP+ LPLRKPYSGNPE LD+EEFGE++ SRT D+   ++A +LGL++ + E++ +F +LP   P+ ++P +    N  R  K
Sbjct:   76 EKPRSGTQVAFGQGN-SYYARNFPMPKKDSSAGGASKLP---KEYAEPWDYSHDYPVTLPLRKPYSGNPEILDEEEFGESSASRTQDDE-LSAAEQLGLMDMSSESQFLFFQLPSSLPLPRQPQSGADPNEVRDEK 206          
BLAST of FG531612 vs. TrEMBL
Match: B6TS89_MAIZE (DNA binding protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.331e-21
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   19 EKKVSASQIAFGSGGQSAHHKPYGIGSKTNGIESSAFVDANGKEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKKPDADVKVNSKRPAK 426
            EK  S +Q+AFG G  S + + + +  K +    ++ +    KEY EPWD   DYP+ LPLRKPYSGNPE LD+EEFGE++ SRT D+   ++A +LGL++ + E++ +F +LP   P+ ++P +    N  R  K
Sbjct:   76 EKPRSGTQVAFGQGN-SYYARNFPMPKKDSSAGGASKLP---KEYAEPWDYSHDYPVTLPLRKPYSGNPEILDEEEFGESSASRTQDDE-LSAAEQLGLMDMSSESQFLFFQLPSSLPLPRQPQSVADPNEVRDEK 206          
BLAST of FG531612 vs. TrEMBL
Match: D7M231_ARALY (DNA-directed RNA polymerase III RPC4 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_325490 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.542e-20
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 1
Query:   13 KVEKKVSASQIAFGSGG-QSAHHKPYGIGSKTNGIESSAFVDANGKEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKKP--DADVKVNSKRPAK 426
            K +KKV AS++A+  G   S     Y  GS  NG   S        EYKEPWD YS YPI LP+R+PY+G+PE LD EEF +AA +    E++ N+AA LGL+E++ E K +FMRLP V P+   P  + + K N + P +
Sbjct:   56 KADKKVPASRVAWMGGVVNSTTSNKYLSGS--NGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAAGNH---EDSLNTAANLGLMEDSGEQKMLFMRLPSV-PLASTPTENRETKPNIRGPVQ 188          
BLAST of FG531612 vs. TrEMBL
Match: Q9FY77_ARATH (Putative uncharacterized protein T5E8_180 OS=Arabidopsis thaliana GN=T5E8_180 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.126e-19
Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   13 KVEKKVSASQIAFGSGGQSAHHKPYGIGSKTNGIESSAFVDANGKEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKKP--DADVKVNSKRPAK 426
            K +KKV ASQ+A+  GG     +     +++NG   S        EYKEPWD YS YPI LP+R+PY+G+PE LD EEF +A     + E++ N+AA LGL+E++ E K  FMRLP V P+   P  + + + N K P +
Sbjct:   56 KADKKVPASQVAW-LGGVVNSTRSNKYLNRSNGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRLPSV-PLASTPTENLETRPNIKGPVE 188          
BLAST of FG531612 vs. TrEMBL
Match: Q7XVM4_ORYSJ (OSJNBa0072K14.7 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0072K14.7 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.126e-19
Identity = 52/130 (40.00%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    7 RMKVEKKVSASQIAFGSGGQSAHHKPYGIGSKTNGIESSAFVDANGKEYKEPWDL-YSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKKPDA 393
            + K EKK   +Q+AFG G  S++ + + + S  +G  S        KEY EPWD  +SDYP+ LPLR+PYSG+PE L++EEFGE++ +   D     +A ELGL+  + + + +F ++P   P+ K+PD+
Sbjct:   38 KFKTEKKEMRTQVAFGQGN-SSYARSFPMQSSADGSASKL-----PKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQD-GELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDS 160          
BLAST of FG531612 vs. TrEMBL
Match: Q01LA8_ORYSA (H0718E12.6 protein OS=Oryza sativa GN=H0718E12.7 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.126e-19
Identity = 52/130 (40.00%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    7 RMKVEKKVSASQIAFGSGGQSAHHKPYGIGSKTNGIESSAFVDANGKEYKEPWDL-YSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKKPDA 393
            + K EKK   +Q+AFG G  S++ + + + S  +G  S        KEY EPWD  +SDYP+ LPLR+PYSG+PE L++EEFGE++ +   D     +A ELGL+  + + + +F ++P   P+ K+PD+
Sbjct:   70 KFKTEKKEMRTQVAFGQGN-SSYARSFPMQSSADGSASKL-----PKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQD-GELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDS 192          
BLAST of FG531612 vs. TrEMBL
Match: C5YEW3_SORBI (Putative uncharacterized protein Sb06g014360 OS=Sorghum bicolor GN=Sb06g014360 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.378e-18
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    4 ARMKV-EKKVSASQIAFGSGGQS-AHHKPYGIGSKTNGIESSAFVDANGKEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKKPDADVKVN 408
            AR+K  +K  S +Q+AFG G  S A + P      + G  S        KEY EPWD   DYP+ LPLR+PYSGNPE LD++EFGE++ SR+ D    ++A ELGL++   E++ ++ + P   P+ ++P +    N
Sbjct:   71 ARIKSGDKPKSGTQVAFGQGSSSYARYFPMPKKDSSAGEASKL-----PKEYAEPWDYTHDYPVTLPLRRPYSGNPEILDEKEFGESSTSRSEDAQ-LSAAEELGLMDWPAESQFLYFQFPSSLPLPRQPQSVANPN 201          
BLAST of FG531612 vs. TAIR peptide
Match: AT5G09380.1 (| Symbols: | RNA polymerase III RPC4 | chr5:2911313-2913136 REVERSE LENGTH=272)

HSP 1 Score: 98.5969 bits (244), Expect = 1.436e-21
Identity = 60/140 (42.86%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   13 KVEKKVSASQIAFGSGGQSAHHKPYGIGSKTNGIESSAFVDANGKEYKEPWDLYSDYPIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFMRLPPVFPMIKKP--DADVKVNSKRPAK 426
            K +KKV ASQ+A+  GG     +     +++NG   S        EYKEPWD YS YPI LP+R+PY+G+PE LD EEF +A     + E++ N+AA LGL+E++ E K  FMRLP V P+   P  + + + N K P +
Sbjct:   56 KADKKVPASQVAW-LGGVVNSTRSNKYLNRSNGAYGST--STQEIEYKEPWDYYSYYPITLPMRRPYAGDPEVLDVEEFMQAG---GHHEDSLNTAANLGLMEDSGEQKMFFMRLPSV-PLASTPTENLETRPNIKGPVE 188          
BLAST of FG531612 vs. TAIR peptide
Match: AT4G25180.1 (| Symbols: | RNA polymerase III RPC4 | chr4:12911746-12913907 REVERSE LENGTH=311)

HSP 1 Score: 88.9669 bits (219), Expect = 1.138e-18
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   97 SKTNGIESSAFVDANGKEYKEPWDLYSDY-PIALPLRKPYSGNPEYLDKEEFGEAAESRTYDENAANSAAELGLLEENPETKSIFM-RLPPVFPMIKK 384
            ++ +G E   FV   G +Y EPWD  + Y P  LPLRKP SG+ E LD+EEFGE A++R YDEN  NSA ELGL       K +F+ ++P   P++K+
Sbjct:  111 AQEDGEEVHNFVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQ 208          
The following BLAST results are available for this feature:
BLAST of FG531612 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9MSX9_POPTR2.677e-3052.99Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RRC4_RICCO4.566e-3049.36DNA binding protein, putative OS=Ricinus communis ... [more]
D7TCG5_VITVI3.865e-2949.62Whole genome shotgun sequence of line PN40024, sca... [more]
B4FTW1_MAIZE7.806e-2241.18DNA binding protein OS=Zea mays PE=2 SV=1[more]
B6TS89_MAIZE1.331e-2141.18DNA binding protein OS=Zea mays PE=2 SV=1[more]
D7M231_ARALY9.542e-2044.68DNA-directed RNA polymerase III RPC4 family protei... [more]
Q9FY77_ARATH2.126e-1942.86Putative uncharacterized protein T5E8_180 OS=Arabi... [more]
Q7XVM4_ORYSJ2.126e-1940.00OSJNBa0072K14.7 protein OS=Oryza sativa subsp. jap... [more]
Q01LA8_ORYSA2.126e-1940.00H0718E12.6 protein OS=Oryza sativa GN=H0718E12.7 P... [more]
C5YEW3_SORBI1.378e-1840.15Putative uncharacterized protein Sb06g014360 OS=So... [more]
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BLAST of FG531612 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G09380.11.436e-2142.86| Symbols: | RNA polymerase III RPC4 | chr5:29113... [more]
AT4G25180.11.138e-1846.94| Symbols: | RNA polymerase III RPC4 | chr4:12911... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007811RNA polymerase III Rpc4PANTHERPTHR13408DNA-DIRECTED RNA POLYMERASE IIIcoord: 35..129
score: 1.2
NoneNo IPR availableSEGsegsegcoord: 39..55
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG531612 ID=FG531612; Name=FG531612; organism=Pisum sativum; type=EST; length=440bp
AAGGCAAGGATGAAGGTTGAGAAAAAAGTGTCAGCTTCACAAATTGCTTT
TGGTTCTGGAGGCCAATCAGCTCATCATAAACCATATGGTATTGGGAGCA
AGACCAATGGCATTGAAAGTTCAGCATTTGTTGATGCAAACGGGAAAGAA
TACAAAGAACCATGGGACCTCTACAGTGATTATCCAATAGCTCTTCCCTT
GAGGAAACCATATTCAGGCAACCCAGAATATCTTGATAAGGAGGAATTTG
GGGAGGCTGCAGAATCCAGAACTTATGATGAAAACGCGGCAAATTCAGCA
GCGGAGCTTGGCCTTCTGGAGGAAAACCCAGAGACAAAGTCAATCTTCAT
GAGATTACCACCAGTCTTTCCTATGATTAAAAAACCAGATGCTGATGTTA
AGGTGAACTCTAAACGTCCTGCGAAACTCTTCAAGTTTGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005666RNA polymerase III complex
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription by RNA polymerase III
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4