AM162155

EST Overview


Name	AM162155
Unique Name	AM162155
Type	EST
Organism	Pisum sativum (pea)
Sequence length	281

Libraries


Library Name	Type
LIBEST_019360 Pisum sativum leaf vegetative	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of AM162155 vs. TrEMBL
Match: C6SZW9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.281e-11
Identity = 41/81 (50.62%), Postives = 44/81 (54.32%), Query Frame = 2

Query:    2 ADDSEFAGKVPPN---AGSQGFNPXXXXXXXXXXXXXTFLIGNIVLYTYAQXXXXXXXXXXXXXXXXXXERLRQGVSAPGE 235
            ADD EFA KVPP+   AGS+GFNP             TFLIGN VLYTYAQ                  ERL+QGVSAPGE
Sbjct:    2 ADDFEFADKVPPSFDRAGSKGFNPALIVLLLVGGLLLTFLIGNYVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 82

[Close]

BLAST of AM162155 vs. TrEMBL
Match: C6T1F6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.479e-9
Identity = 37/81 (45.68%), Postives = 42/81 (51.85%), Query Frame = 2

Query:    2 ADDSEFAGKVPPN---AGSQGFNPXXXXXXXXXXXXXTFLIGNIVLYTYAQXXXXXXXXXXXXXXXXXXERLRQGVSAPGE 235
            ADD EF+ KVPP+    GS+GFNP              FL+GN VLYTYAQ                  ERL+QGVSAPGE
Sbjct:    2 ADDFEFSDKVPPSFDRVGSKGFNPALIVLLLVGGLLLIFLVGNYVLYTYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 82

[Close]

BLAST of AM162155 vs. TrEMBL
Match: C6SX22_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.750e-9
Identity = 38/88 (43.18%), Postives = 44/88 (50.00%), Query Frame = 2

Query:    2 ADDSEFAGKVPPN----------AGSQGFNPXXXXXXXXXXXXXTFLIGNIVLYTYAQXXXXXXXXXXXXXXXXXXERLRQGVSAPGE 235
            ADD +FA KVPP+          +GS+GFNP             TFLIGN VLY+YAQ                  ERL+QGVSAPGE
Sbjct:    2 ADDFDFADKVPPSFDRVGNVIKDSGSKGFNPGLIVLLVVGGLLLTFLIGNYVLYSYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 89

[Close]

BLAST of AM162155 vs. TrEMBL
Match: C6SX03_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.322e-8
Identity = 38/88 (43.18%), Postives = 43/88 (48.86%), Query Frame = 2

Query:    2 ADDSEFAGKVPPN----------AGSQGFNPXXXXXXXXXXXXXTFLIGNIVLYTYAQXXXXXXXXXXXXXXXXXXERLRQGVSAPGE 235
            ADD +FA KVPP+          +GS+ FNP             TFLIGN VLYTYAQ                  ERL+QGVSAPGE
Sbjct:    2 ADDFDFADKVPPSFDRVGNVIKDSGSKAFNPGLIVLLVVGGLLLTFLIGNYVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 89

The following BLAST results are available for this feature:

BLAST of AM162155 vs. TrEMBL

BLAST of AM162155 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 4


Match Name	E-value	Identity	Description
C6SZW9_SOYBN	8.281e-11	50.62	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T1F6_SOYBN	3.479e-9	45.68	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SX22_SOYBN	7.750e-9	43.18	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SX03_SOYBN	1.322e-8	43.18	Putative uncharacterized protein OS=Glycine max PE...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 14..78 score: 1.7
None	No IPR available	SEG	seg	seg	coord: 22..34 score: NAcoord: 49..66 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>AM162155 ID=AM162155; Name=AM162155; organism=Pisum sativum; type=EST; length=281bp
GGCCGATGATTCTGAATTCGCCGGTAAAGTTCCTCCGAATGCTGGTTCTC
AAGGGTTCAACCCAGGCTTAATAGTTCTACTTGTTGTTGGTGGGTTGCTA
TTGACATTCCTGATTGGAAACATTGTGCTCTACACTTATGCACAGAAGAT
CATTCCTCCTAGGANAAAGAAGCCTGTCTCAAAGAAGAAGATCAAAAAGG
AGAGGCTGAGGCAAGGAGTCTCTGCACCTGGAGAGTAGAGGCAATGGACT
CAAATGTTCTATAAATTGTGGATTACCTTGT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0045449	regulation of transcription

Vocabulary: **INTERPRO**
Term	Definition
IPR006779	S1FA_DNA-bd

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