EX570495
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EX570495 vs. TrEMBL
Match: Q1XBQ8_SOYBN (DNA mismatch repair protein OS=Glycine max GN=MSH1 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.139e-44 Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 2 Query: 5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLY 328 +LT+I C +IGTRELPPP +GSSSVY+M RPDKKLYVGETD+LE RVR HR KEGM +ASFLYFLVPGKSLACQ E+LLINQL QGF LSNIADGKHRNFGTSNLY Sbjct: 1022 ELTEIKCLIIGTRELPPPSVVGSSSVYVMFRPDKKLYVGETDDLEGRVRRHRLKEGMHDASFLYFLVPGKSLACQFESLLINQLSGQGFQLSNIADGKHRNFGTSNLY 1129
BLAST of EX570495 vs. TrEMBL
Match: Q2TMH4_PHAVU (DNA mismatch repair protein OS=Phaseolus vulgaris PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 9.027e-42 Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 2 Query: 5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLY 328 +L +I C LIG RE PPP +GSSSVY++ PDKKLYVGETD+LE RVR HR KEGM EASFLYFLVPGKSLACQ E+LLINQL +QGF LSN+ADGKHRNFGTSNLY Sbjct: 1018 ELPEIKCLLIGKREQPPPSVVGSSSVYVIFTPDKKLYVGETDDLEGRVRRHRLKEGMDEASFLYFLVPGKSLACQFESLLINQLSSQGFQLSNMADGKHRNFGTSNLY 1125
BLAST of EX570495 vs. TrEMBL
Match: Q1WK36_PHAVU (DNA mismatch repair protein OS=Phaseolus vulgaris GN=Msh1 PE=4 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 9.027e-42 Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 2 Query: 5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLY 328 +L +I C LIG RE PPP +GSSSVY++ PDKKLYVGETD+LE RVR HR KEGM EASFLYFLVPGKSLACQ E+LLINQL +QGF LSN+ADGKHRNFGTSNLY Sbjct: 1018 ELPEIKCLLIGKREQPPPSVVGSSSVYVIFTPDKKLYVGETDDLEGRVRRHRLKEGMDEASFLYFLVPGKSLACQFESLLINQLSSQGFQLSNMADGKHRNFGTSNLY 1125
BLAST of EX570495 vs. TrEMBL
Match: Q1XBQ6_SOLLC (DNA mismatch repair protein (Fragment) OS=Solanum lycopersicum GN=MSH1 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.441e-39 Identity = 78/103 (75.73%), Postives = 89/103 (86.41%), Query Frame = 2 Query: 5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFG 313 ++ +NC LI RE P P TIG+SSVYIMLRPDKKLYVG+TD+LE RVRAHR KEGM+ ASFLYFLV GKS+ACQ+ETLLINQLPN GF L+N+ADGKHRNFG Sbjct: 1022 EMPMVNCVLIAAREQPAPSTIGASSVYIMLRPDKKLYVGQTDDLEGRVRAHRLKEGMENASFLYFLVSGKSIACQLETLLINQLPNHGFQLTNVADGKHRNFG 1124
BLAST of EX570495 vs. TrEMBL
Match: B9HSU9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_885217 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.718e-38 Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 2 Query: 5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLYVQ 334 ++ +C IG RE PPP TI +S VY+MLRPDKKLYVG TD+LE R+R+HRSKEGM A+FLYF+VPGKS+AC +ETLLINQLP +GF L+N++DGKHRNFGT+NL ++ Sbjct: 1016 EVVSFHCVAIGAREQPPPSTISASCVYVMLRPDKKLYVGVTDDLESRIRSHRSKEGMDNAAFLYFIVPGKSIACLLETLLINQLPIKGFKLTNVSDGKHRNFGTTNLSLE 1125
BLAST of EX570495 vs. TrEMBL
Match: D7SZQ0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_49.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027931001 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 7.908e-38 Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 2 Query: 8 LTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLYVQL 337 L +INC I E PPP TIG+SSVY++ DKKLYVGETD+LE RVRAHRSKEGMQ+ASFLYF+VPGKSLACQ+ETLLINQLP QGF L N ADGKHRNFGT + V++ Sbjct: 1000 LPEINCVAILPGEQPPPSTIGASSVYVLFSTDKKLYVGETDDLEGRVRAHRSKEGMQKASFLYFVVPGKSLACQLETLLINQLPVQGFQLVNRADGKHRNFGTLDHSVEV 1109
BLAST of EX570495 vs. TrEMBL
Match: B3U2A3_CUCSA (DNA mismatch repair protein OS=Cucumis sativus PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.762e-37 Identity = 72/104 (69.23%), Postives = 91/104 (87.50%), Query Frame = 2 Query: 14 KINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNL 325 +I C LI RE PPP TIG+SSVY++LRPD K YVG+TD+L+ RV++HR KEGM++A+FLY +VPGKSLACQ+ETLLIN+LP+ GF L+N+ADGKHRNFGT+NL Sbjct: 1115 EIQCVLIDAREKPPPSTIGASSVYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRNFGTANL 1218
BLAST of EX570495 vs. TrEMBL
Match: Q9LK12_ARATH (Similarity to mismatch repair protein MutS OS=Arabidopsis thaliana PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 3.925e-37 Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 2 Query: 17 INCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSN 322 I C IG RELPPP T+GSS VY+M RPDK+LY+G+TD+LE R+RAHR+KEG+Q +SFLY +V GKS+ACQ+ETLLINQL QG+ L+N+ADGKHRNFGTS+ Sbjct: 904 IECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1005
BLAST of EX570495 vs. TrEMBL
Match: Q84LK0_ARATH (DNA mismatch repair protein OS=Arabidopsis thaliana GN=MSH1 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 3.925e-37 Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 2 Query: 17 INCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSN 322 I C IG RELPPP T+GSS VY+M RPDK+LY+G+TD+LE R+RAHR+KEG+Q +SFLY +V GKS+ACQ+ETLLINQL QG+ L+N+ADGKHRNFGTS+ Sbjct: 1006 IECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1107
BLAST of EX570495 vs. TrEMBL
Match: D7L521_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479946 PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 1.491e-36 Identity = 69/102 (67.65%), Postives = 88/102 (86.27%), Query Frame = 2 Query: 17 INCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSN 322 + C IG RELPPP T+GSS VY+M RPDK+LY+G+TD+LE R+R+HR+KEG+Q +SFLY +V GKS+ACQ+ETLLINQL QG+ L+N+ADGKHRNFGTS+ Sbjct: 1003 LECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRSHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1104
BLAST of EX570495 vs. TAIR peptide
Match: AT3G24320.1 (| Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118) HSP 1 Score: 157.918 bits (398), Expect = 3.161e-39 Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 2 Query: 17 INCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSN 322 I C IG RELPPP T+GSS VY+M RPDK+LY+G+TD+LE R+RAHR+KEG+Q +SFLY +V GKS+ACQ+ETLLINQL QG+ L+N+ADGKHRNFGTS+ Sbjct: 1006 IECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1107 The following BLAST results are available for this feature:
BLAST of EX570495 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of EX570495 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EX570495 ID=EX570495; Name=EX570495; organism=Pisum sativum; type=EST; length=549bpback to top Annotated Terms
The
following terms have been associated with
this EST:
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