EX570495

EST Overview
NameEX570495
Unique NameEX570495
TypeEST
OrganismPisum sativum (pea)
Sequence length549
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of EX570495 vs. TrEMBL
Match: Q1XBQ8_SOYBN (DNA mismatch repair protein OS=Glycine max GN=MSH1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.139e-44
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 2
Query:    5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLY 328
            +LT+I C +IGTRELPPP  +GSSSVY+M RPDKKLYVGETD+LE RVR HR KEGM +ASFLYFLVPGKSLACQ E+LLINQL  QGF LSNIADGKHRNFGTSNLY
Sbjct: 1022 ELTEIKCLIIGTRELPPPSVVGSSSVYVMFRPDKKLYVGETDDLEGRVRRHRLKEGMHDASFLYFLVPGKSLACQFESLLINQLSGQGFQLSNIADGKHRNFGTSNLY 1129          
BLAST of EX570495 vs. TrEMBL
Match: Q2TMH4_PHAVU (DNA mismatch repair protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.027e-42
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 2
Query:    5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLY 328
            +L +I C LIG RE PPP  +GSSSVY++  PDKKLYVGETD+LE RVR HR KEGM EASFLYFLVPGKSLACQ E+LLINQL +QGF LSN+ADGKHRNFGTSNLY
Sbjct: 1018 ELPEIKCLLIGKREQPPPSVVGSSSVYVIFTPDKKLYVGETDDLEGRVRRHRLKEGMDEASFLYFLVPGKSLACQFESLLINQLSSQGFQLSNMADGKHRNFGTSNLY 1125          
BLAST of EX570495 vs. TrEMBL
Match: Q1WK36_PHAVU (DNA mismatch repair protein OS=Phaseolus vulgaris GN=Msh1 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.027e-42
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 2
Query:    5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLY 328
            +L +I C LIG RE PPP  +GSSSVY++  PDKKLYVGETD+LE RVR HR KEGM EASFLYFLVPGKSLACQ E+LLINQL +QGF LSN+ADGKHRNFGTSNLY
Sbjct: 1018 ELPEIKCLLIGKREQPPPSVVGSSSVYVIFTPDKKLYVGETDDLEGRVRRHRLKEGMDEASFLYFLVPGKSLACQFESLLINQLSSQGFQLSNMADGKHRNFGTSNLY 1125          
BLAST of EX570495 vs. TrEMBL
Match: Q1XBQ6_SOLLC (DNA mismatch repair protein (Fragment) OS=Solanum lycopersicum GN=MSH1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.441e-39
Identity = 78/103 (75.73%), Postives = 89/103 (86.41%), Query Frame = 2
Query:    5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFG 313
            ++  +NC LI  RE P P TIG+SSVYIMLRPDKKLYVG+TD+LE RVRAHR KEGM+ ASFLYFLV GKS+ACQ+ETLLINQLPN GF L+N+ADGKHRNFG
Sbjct: 1022 EMPMVNCVLIAAREQPAPSTIGASSVYIMLRPDKKLYVGQTDDLEGRVRAHRLKEGMENASFLYFLVSGKSIACQLETLLINQLPNHGFQLTNVADGKHRNFG 1124          
BLAST of EX570495 vs. TrEMBL
Match: B9HSU9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_885217 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.718e-38
Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 2
Query:    5 DLTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLYVQ 334
            ++   +C  IG RE PPP TI +S VY+MLRPDKKLYVG TD+LE R+R+HRSKEGM  A+FLYF+VPGKS+AC +ETLLINQLP +GF L+N++DGKHRNFGT+NL ++
Sbjct: 1016 EVVSFHCVAIGAREQPPPSTISASCVYVMLRPDKKLYVGVTDDLESRIRSHRSKEGMDNAAFLYFIVPGKSIACLLETLLINQLPIKGFKLTNVSDGKHRNFGTTNLSLE 1125          
BLAST of EX570495 vs. TrEMBL
Match: D7SZQ0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_49.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027931001 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.908e-38
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 2
Query:    8 LTKINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNLYVQL 337
            L +INC  I   E PPP TIG+SSVY++   DKKLYVGETD+LE RVRAHRSKEGMQ+ASFLYF+VPGKSLACQ+ETLLINQLP QGF L N ADGKHRNFGT +  V++
Sbjct: 1000 LPEINCVAILPGEQPPPSTIGASSVYVLFSTDKKLYVGETDDLEGRVRAHRSKEGMQKASFLYFVVPGKSLACQLETLLINQLPVQGFQLVNRADGKHRNFGTLDHSVEV 1109          
BLAST of EX570495 vs. TrEMBL
Match: B3U2A3_CUCSA (DNA mismatch repair protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.762e-37
Identity = 72/104 (69.23%), Postives = 91/104 (87.50%), Query Frame = 2
Query:   14 KINCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSNL 325
            +I C LI  RE PPP TIG+SSVY++LRPD K YVG+TD+L+ RV++HR KEGM++A+FLY +VPGKSLACQ+ETLLIN+LP+ GF L+N+ADGKHRNFGT+NL
Sbjct: 1115 EIQCVLIDAREKPPPSTIGASSVYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRNFGTANL 1218          
BLAST of EX570495 vs. TrEMBL
Match: Q9LK12_ARATH (Similarity to mismatch repair protein MutS OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.925e-37
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 2
Query:   17 INCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSN 322
            I C  IG RELPPP T+GSS VY+M RPDK+LY+G+TD+LE R+RAHR+KEG+Q +SFLY +V GKS+ACQ+ETLLINQL  QG+ L+N+ADGKHRNFGTS+
Sbjct:  904 IECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1005          
BLAST of EX570495 vs. TrEMBL
Match: Q84LK0_ARATH (DNA mismatch repair protein OS=Arabidopsis thaliana GN=MSH1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.925e-37
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 2
Query:   17 INCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSN 322
            I C  IG RELPPP T+GSS VY+M RPDK+LY+G+TD+LE R+RAHR+KEG+Q +SFLY +V GKS+ACQ+ETLLINQL  QG+ L+N+ADGKHRNFGTS+
Sbjct: 1006 IECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1107          
BLAST of EX570495 vs. TrEMBL
Match: D7L521_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479946 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.491e-36
Identity = 69/102 (67.65%), Postives = 88/102 (86.27%), Query Frame = 2
Query:   17 INCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSN 322
            + C  IG RELPPP T+GSS VY+M RPDK+LY+G+TD+LE R+R+HR+KEG+Q +SFLY +V GKS+ACQ+ETLLINQL  QG+ L+N+ADGKHRNFGTS+
Sbjct: 1003 LECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRSHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1104          
BLAST of EX570495 vs. TAIR peptide
Match: AT3G24320.1 (| Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118)

HSP 1 Score: 157.918 bits (398), Expect = 3.161e-39
Identity = 71/102 (69.61%), Postives = 88/102 (86.27%), Query Frame = 2
Query:   17 INCFLIGTRELPPPMTIGSSSVYIMLRPDKKLYVGETDNLEDRVRAHRSKEGMQEASFLYFLVPGKSLACQIETLLINQLPNQGFLLSNIADGKHRNFGTSN 322
            I C  IG RELPPP T+GSS VY+M RPDK+LY+G+TD+LE R+RAHR+KEG+Q +SFLY +V GKS+ACQ+ETLLINQL  QG+ L+N+ADGKHRNFGTS+
Sbjct: 1006 IECLSIGARELPPPSTVGSSCVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLMVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSS 1107          
The following BLAST results are available for this feature:
BLAST of EX570495 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q1XBQ8_SOYBN1.139e-4480.56DNA mismatch repair protein OS=Glycine max GN=MSH1... [more]
Q2TMH4_PHAVU9.027e-4276.85DNA mismatch repair protein OS=Phaseolus vulgaris ... [more]
Q1WK36_PHAVU9.027e-4276.85DNA mismatch repair protein OS=Phaseolus vulgaris ... [more]
Q1XBQ6_SOLLC1.441e-3975.73DNA mismatch repair protein (Fragment) OS=Solanum ... [more]
B9HSU9_POPTR2.718e-3866.36Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SZQ0_VITVI7.908e-3872.73Whole genome shotgun sequence of line PN40024, sca... [more]
B3U2A3_CUCSA1.762e-3769.23DNA mismatch repair protein OS=Cucumis sativus PE=... [more]
Q9LK12_ARATH3.925e-3769.61Similarity to mismatch repair protein MutS OS=Arab... [more]
Q84LK0_ARATH3.925e-3769.61DNA mismatch repair protein OS=Arabidopsis thalian... [more]
D7L521_ARALY1.491e-3667.65Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of EX570495 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G24320.13.161e-3969.61| Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000305Excinuclease ABC, C subunit, N-terminalPFAMPF01541GIY-YIGcoord: 25..85
score: 6.6
IPR000305Excinuclease ABC, C subunit, N-terminalSUPERFAMILY82771GIY-YIG endonucleasecoord: 23..101
score: 5.1

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX570495 ID=EX570495; Name=EX570495; organism=Pisum sativum; type=EST; length=549bp
ACCAGACCTTACCAAGATAAACTGTTTCCTAATTGGCACTAGGGAATTGC
CTCCTCCGATGACTATAGGTTCTTCAAGCGTATACATAATGCTCAGGCCA
GATAAGAAACTCTACGTAGGAGAGACGGACAATCTTGAGGATCGAGTTCG
CGCACATCGATCGAAGGAAGGGATGCAGGAAGCATCATTTCTTTATTTCT
TAGTTCCGGGAAAAAGCCTGGCATGCCAAATAGAAACTCTGCTCATCAAC
CAGCTTCCGAATCAAGGCTTCCTCTTAAGCAATATAGCTGATGGTAAGCA
TAGGAATTTCGGTACATCCAACCTCTATGTGCAACTATAAAGATTGACAA
CCTTTTAAGCTATTATTTTGGCTGGTTATATCCAACTAATGACTTGAATC
ATCATTTAAGTTTTACTGAAGAAGTTTAGGAAGCAATGTGTGCAGCGTTT
TTGTTAGAATTAGTTGCTGCTGTTGCGATTATGTCCACATCTGCAAATGT
ATTTATTTTGTATGAGCTTGTAAGCACTCTCTCCGTTCCTTTTCAAGTG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_endonuc