FG531963
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FG531963 vs. TrEMBL
Match: Q2HT28_MEDTR (Transcription Factor IIF, Rap30/Rap74, interaction OS=Medicago truncatula GN=MtrDRAFT_AC150798g21v2 PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 4.963e-48 Identity = 103/151 (68.21%), Postives = 106/151 (70.20%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 RPW LEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA P AFGEH KLD+KESN RK R NKK +D+DE Sbjct: 114 RPWLLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAFGEHGKLDDKESNAGGGRGRKKTGDDEDEGPSSDKGEEDEDEEVDRKKR--PNKKNTFDDDE 262
BLAST of FG531963 vs. TrEMBL
Match: B9S068_RICCO (Tfiif-alpha, putative OS=Ricinus communis GN=RCOM_1299530 PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 9.686e-44 Identity = 93/151 (61.59%), Postives = 104/151 (68.87%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 RPW LEDETGQ Q+QGHLEGSQSATYYLL+ + KEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM+NR+KTADGY+RWMMKA P AFGE KLD+K+S RKNRLGLNK+ G D++E Sbjct: 117 RPWLLEDETGQFQYQGHLEGSQSATYYLLILQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMRNRRKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDRGDEDEEEEAARKNRLGLNKRGGDDDEE 267
BLAST of FG531963 vs. TrEMBL
Match: D7TRJ8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_187.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00003352001 PE=4 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.386e-42 Identity = 93/153 (60.78%), Postives = 104/153 (67.97%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKESN--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 +PW LEDETGQ Q+ G LEGSQSATYYLLM + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR++TADGYQRWMMKA P AFGE KLD+KE+ RKNRLGLNK++G D++E Sbjct: 116 KPWLLEDETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEEDEEEEAERKNRLGLNKRSGDDDEE 268
BLAST of FG531963 vs. TrEMBL
Match: A5BCP5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003680 PE=4 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.386e-42 Identity = 93/153 (60.78%), Postives = 104/153 (67.97%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKESN--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 +PW LEDETGQ Q+ G LEGSQSATYYLLM + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR++TADGYQRWMMKA P AFGE KLD+KE+ RKNRLGLNK++G D++E Sbjct: 12 KPWLLEDETGQYQYHGQLEGSQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEEDEEEEAERKNRLGLNKRSGDDDEE 164
BLAST of FG531963 vs. TrEMBL
Match: Q2HT32_MEDTR (Transcription Factor IIF, Rap30/Rap74, interaction OS=Medicago truncatula GN=MtrDRAFT_AC150798g17v2 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 3.116e-42 Identity = 95/151 (62.91%), Postives = 99/151 (65.56%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 RPW LEDETGQSQFQGHLEGSQSATYYLLMK KK YNFNKVAQYKQLTLEEAEEKM NRKKTADGYQRWMMKA P AFGEH KLD+KESN +KNR GLNKK+GYD+DE Sbjct: 114 RPWFLEDETGQSQFQGHLEGSQSATYYLLMKGKK----------YNFNKVAQYKQLTLEEAEEKMNNRKKTADGYQRWMMKAANNGPAAFGEHWKLDDKESNAGGGRSRKKTGDDDDEGPSSDKGEEDEDEEVDKKNRHGLNKKSGYDDDE 254
BLAST of FG531963 vs. TrEMBL
Match: B9SUD1_RICCO (Tfiif-alpha, putative OS=Ricinus communis GN=RCOM_0722120 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 6.497e-40 Identity = 89/152 (58.55%), Postives = 100/152 (65.79%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKE-SNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 +PW LEDETGQ Q+ GHLEGSQSATYYLL+ + KEFVAIPA SWYNFNKVAQYK LTLEEAEEKMKNR+KTADGY+RWMMKA P AFGE K D+K+ RKNRLGLN++ G D+DE Sbjct: 160 KPWLLEDETGQYQYHGHLEGSQSATYYLLILQGKEFVAIPAASWYNFNKVAQYKMLTLEEAEEKMKNRRKTADGYERWMMKAANNGPAAFGEMEKPDDKDVRTTSGRGRRKTAGDDDDEGKISDKGEEDEEEEMSRKNRLGLNRQGGGDDDE 311
BLAST of FG531963 vs. TrEMBL
Match: B9IH94_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_254823 PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 6.497e-40 Identity = 92/154 (59.74%), Postives = 103/154 (66.88%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSW--YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKES-NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 +PW LEDETGQSQ+QGHLEGSQSATYYLLM KEFVAIPAGSW YNFNKVA YKQLTLEEAEEKMKNR+KTADGY+RWMMKA AFGE K+D+KE + RK+RLGLNK+ G D++E Sbjct: 116 KPWLLEDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVSDRGEEDEEEEAGRKSRLGLNKQGGGDDEE 269
BLAST of FG531963 vs. TrEMBL
Match: D7M135_ARALY (Mutant TFIIF-alpha OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_327370 PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 8.486e-40 Identity = 90/153 (58.82%), Postives = 100/153 (65.36%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGE--HAKLDEKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 +PW LEDETGQ Q+QGHLEGSQSATYYLL+ + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGYQRWMMKA P FGE + K S RK+RLGLNKK+ D++E Sbjct: 114 KPWILEDETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNDKESGGSSGGGGRGRKKSSGGDEDEGNVSDRGEEDEEEEASRKSRLGLNKKSNDDDEE 266
BLAST of FG531963 vs. TrEMBL
Match: B9HCF8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1080142 PE=4 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 3.565e-38 Identity = 90/154 (58.44%), Postives = 100/154 (64.94%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSW--YNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKES-NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 +PW LEDETGQ Q+QGHLEGSQSATYYLLM KEFVAIPAGSW YNFNKVA YKQLTLEEAEEKMKNR+KTADGY+RWMMKA AFGE K D+K+ + RK+RLGLNK G D++E Sbjct: 116 KPWLLEDETGQFQYQGHLEGSQSATYYLLMMSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDKGEEDEEEEAGRKSRLGLNKGGGDDDEE 269
BLAST of FG531963 vs. TrEMBL
Match: Q8LMN8_ORYSJ (Mutant TFIIF-alpha, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os10g10990 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 5.890e-33 Identity = 80/153 (52.29%), Postives = 91/153 (59.48%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQS--ATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGEHAKLDEKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 +PW LEDETGQ Q+QG +EGSQS ATYYLLM KEF A PAGSWYNF+K+AQYKQLTLEEAEEKM RK +A GY+RWMMKA P AFG K E + RKNRL LNKK+ D++E Sbjct: 117 KPWILEDETGQYQYQGQMEGSQSSTATYYLLMMHGKEFHAYPAGSWYNFSKIAQYKQLTLEEAEEKMNKRKTSATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNSDKGEEDEEEEAARKNRLALNKKSMDDDEE 269
BLAST of FG531963 vs. SwissProt
Match: T2FA_ARATH (Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 3.733e-41 Identity = 90/153 (58.82%), Postives = 100/153 (65.36%), Query Frame = 3 Query: 6 RPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGE--HAKLDEKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 +PW LEDETGQ Q+QGHLEGSQSATYYLL+ + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGYQRWMMKA P FGE + K S RK+RLGLN+K+ D+DE Sbjct: 114 KPWILEDETGQFQYQGHLEGSQSATYYLLVMQNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDE 266
BLAST of FG531963 vs. SwissProt
Match: T2FA_DICDI (General transcription factor IIF subunit 1 OS=Dictyostelium discoideum GN=gtf2f1 PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.998e-10 Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 9 PWHLEDETGQSQFQGHLEGSQ-SATYYLLMKEKKEFV-AIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMK 248 PW LED G + +QG++EG+Q S+ Y+L M + + A+P WYNF +++ LT EEAE+ MK + + D + + K Sbjct: 149 PWKLEDSEGNNTYQGNVEGNQASSNYFLFMFQSDGSIKAVPCNDWYNFRPKKEFQSLTTEEAEDFMKKKNQEWDVFTSRLQK 230
BLAST of FG531963 vs. SwissProt
Match: T2FA_SCHPO (Transcription initiation factor IIF subunit alpha OS=Schizosaccharomyces pombe GN=tfg1 PE=1 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 1.870e-8 Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3 Query: 3 IRPWHLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMK 248 + PW +ED G++ + +EG QS+ Y L M + F IP +Y FN+ ++ L+++EAE KM KKT RW MK Sbjct: 148 LSPWIMEDFEGKNTWVSTMEGGQSSAYVLFMFSENGFKVIPTDRFYRFNQRNNFQTLSIDEAEAKM--NKKTP--IPRWFMK 225
BLAST of FG531963 vs. TAIR peptide
Match: AT4G12610.2 (| Symbols: RAP74, ATRAP74 | transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors | chr4:7455565-7458318 FORWARD LENGTH=506) HSP 1 Score: 114.005 bits (284), Expect = 3.423e-26 Identity = 65/122 (53.28%), Postives = 72/122 (59.02%), Query Frame = 3 Query: 99 EKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGE--HAKLDEKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGYQRWMMKA P FGE + K S RK+RLGLN+K+ D+DE Sbjct: 2 QNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDE 123
BLAST of FG531963 vs. TAIR peptide
Match: AT4G12610.1 (| Symbols: RAP74, ATRAP74 | transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors | chr4:7455565-7457465 FORWARD LENGTH=400) HSP 1 Score: 114.005 bits (284), Expect = 3.423e-26 Identity = 65/122 (53.28%), Postives = 72/122 (59.02%), Query Frame = 3 Query: 99 EKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKA----PTAFGE--HAKLDEKESNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKNRLGLNKKTGYDEDE 446 + KEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNR+KTADGYQRWMMKA P FGE + K S RK+RLGLN+K+ D+DE Sbjct: 2 QNKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALFGEVDNEKESGGTSGGGGRGRKKSSGGDEEEGNVSDRGDEDEEEEASRKSRLGLNRKSNDDDDE 123 The following BLAST results are available for this feature:
BLAST of FG531963 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of FG531963 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 3
BLAST of FG531963 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FG531963 ID=FG531963; Name=FG531963; organism=Pisum sativum; type=EST; length=447bpback to top Annotated Terms
The
following terms have been associated with
this EST:
|