FG533774

EST Overview
NameFG533774
Unique NameFG533774
TypeEST
OrganismPisum sativum (pea)
Sequence length528
Libraries
Library NameType
LIBEST_023217 MeriP Pisum sativum Shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of FG533774 vs. TrEMBL
Match: D7MDC3_ARALY (AT4g28450/F20O9_130 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_913673 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.601e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            ILPRE+KKHEY+EA+K RY HLPEV RI RHRHLP+P+YKA A++RT+                PG+V TKPLR ++I+KEVE
Sbjct:  370 ILPREQKKHEYNEAVKNRYKHLPEVKRIVRHRHLPKPIYKAMAIIRTVNDSKRRKEARRKAHSAPGTVVTKPLRKRKIIKEVE 452          
BLAST of FG533774 vs. TrEMBL
Match: B9RVU4_RICCO (U3 small nucleolar RNA (U3 snorna) associated protein, putative OS=Ricinus communis GN=RCOM_1172980 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.677e-20
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            +LPRE+K+HEY+EA+K RY HLPE+ RI RHRHLP+P+YKAA + RT+                PGSV T+PLR +RI+KE E
Sbjct:  370 LLPRERKRHEYNEAVKNRYKHLPEIKRIVRHRHLPKPIYKAAEIRRTVTEAEKRKEDRRRAHSTPGSVVTEPLRKRRIIKEEE 452          
BLAST of FG533774 vs. TrEMBL
Match: B9MYE4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_836650 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.933e-19
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            +LPRE+K+HEY+EA+K RY HLPEV RI RHRHLP+P+YKA  L R M                PGS+ T+P+R +RI+KEV+
Sbjct:  370 LLPREQKRHEYNEALKNRYKHLPEVKRIVRHRHLPKPIYKAGVLRRVMIEAERRKDQRRKAHSAPGSIVTEPMRKRRIIKEVD 452          
BLAST of FG533774 vs. TrEMBL
Match: B9HGQ7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_832186 PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.525e-19
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            +LPRE+++HEY+EA+K RY HLPEV RI RHRHLP+P+YKA  L R M                PGS+ T+P+R +RI+KEVE
Sbjct:  370 LLPREQRRHEYNEALKTRYKHLPEVKRIVRHRHLPKPIYKAGVLRRVMIEAERRKDHRRKAHSAPGSIVTEPMRKRRIIKEVE 452          
BLAST of FG533774 vs. TrEMBL
Match: Q93VK1_ARATH (AT4g28450/F20O9_130 OS=Arabidopsis thaliana GN=At4g28450 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.624e-19
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            ILPRE+KKHEY+EA+K RY HL EV RI RHRHLP+P+YKA  ++RT+                PG+V T PLR ++I+KEVE
Sbjct:  370 ILPREQKKHEYNEAVKNRYKHLSEVKRIVRHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 452          
BLAST of FG533774 vs. TrEMBL
Match: Q8W4D9_ARATH (SOF1 protein-like protein OS=Arabidopsis thaliana GN=F20O9.130 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.624e-19
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            ILPRE+KKHEY+EA+K RY HL EV RI RHRHLP+P+YKA  ++RT+                PG+V T PLR ++I+KEVE
Sbjct:  370 ILPREQKKHEYNEAVKNRYKHLSEVKRIVRHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 452          
BLAST of FG533774 vs. TrEMBL
Match: O49454_ARATH (SOF1 protein-like protein OS=Arabidopsis thaliana GN=F20O9.130 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.624e-19
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            ILPRE+KKHEY+EA+K RY HL EV RI RHRHLP+P+YKA  ++RT+                PG+V T PLR ++I+KEVE
Sbjct:  201 ILPREQKKHEYNEAVKNRYKHLSEVKRIVRHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 283          
BLAST of FG533774 vs. TrEMBL
Match: C5XJI5_SORBI (Putative uncharacterized protein Sb03g000410 OS=Sorghum bicolor GN=Sb03g000410 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.253e-18
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            +LPRE+KK EY +A+K+RY HLPEV RI RHRHLP+P+YKAA L RTM                PGS+  +P R +RI+KEVE
Sbjct:  370 LLPRERKKQEYQDALKERYKHLPEVKRIVRHRHLPKPIYKAANLRRTMIEAENRKEERRRKHSAPGSMPVQPFRKRRIIKEVE 452          
BLAST of FG533774 vs. TrEMBL
Match: C5WS04_SORBI (Putative uncharacterized protein Sb01g000780 OS=Sorghum bicolor GN=Sb01g000780 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.791e-18
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            +LPRE+KK EY +A+K+RY HLPEV RI RHRHLP+P+YKAA L RTM                PGS+  +P R +RI+KEVE
Sbjct:  370 LLPRERKKLEYQDALKERYKHLPEVKRIVRHRHLPKPIYKAANLRRTMMEAENRKEERRRKHSAPGSMPVQPFRKRRIIKEVE 452          
BLAST of FG533774 vs. TrEMBL
Match: B6TTU7_MAIZE (Protein SOF1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.791e-18
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            +LPRE+KK EY +A+K+RY HLPEV RI RHRHLP+P+YKAA L RTM                PGS+  +P R +RI++EVE
Sbjct:  370 LLPRERKKQEYQDALKERYKHLPEVKRIVRHRHLPKPIYKAANLRRTMIEAESRKEERRRKHSAPGSMPVQPFRKRRIIREVE 452          
BLAST of FG533774 vs. SwissProt
Match: DCA13_CHICK (DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.457e-7
Identity = 28/83 (33.73%), Postives = 41/83 (49.40%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            + PREK    Y++ +K+++ H P++ RIARHRHLP+ +Y      R M                PGSV     + K IV  V+
Sbjct:  363 LAPREKAAMNYNQKLKEKFQHHPQIKRIARHRHLPKSIYCQIKEQRIMREARRRKELNRRKHSKPGSVPVVSEKKKHIVAVVQ 445          
BLAST of FG533774 vs. SwissProt
Match: DCA13_XENTR (DDB1- and CUL4-associated factor 13 OS=Xenopus tropicalis GN=dcaf13 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.209e-7
Identity = 26/81 (32.10%), Postives = 40/81 (49.38%), Query Frame = 3
Query:   12 PREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            PRE+    Y++ +K+++ H P++ RIARHRHLPR +Y      + M                PGSV     + K ++  VE
Sbjct:  365 PRERAAQNYNQKLKEKFHHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVNRRKHSKPGSVPIPSEKKKHVLAVVE 445          
BLAST of FG533774 vs. SwissProt
Match: DCA13_XENLA (DDB1- and CUL4-associated factor 13 OS=Xenopus laevis GN=dcaf13 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.209e-7
Identity = 26/81 (32.10%), Postives = 40/81 (49.38%), Query Frame = 3
Query:   12 PREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            PRE+    Y++ +K+++ H P++ RIARHRHLPR +Y      + M                PGSV     + K ++  VE
Sbjct:  365 PRERAAQNYNQKLKEKFQHHPQIKRIARHRHLPRSIYSQIKEQQIMREARRKKDVNRRKHSKPGSVPIPSEKKKHVLAVVE 445          
BLAST of FG533774 vs. SwissProt
Match: DCA13_PONAB (DDB1- and CUL4-associated factor 13 OS=Pongo abelii GN=DCAF13 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 9.337e-7
Identity = 26/80 (32.50%), Postives = 39/80 (48.75%), Query Frame = 3
Query:   15 REKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            REK   +Y++ +K+++ H P + RIARHRHLP+ +Y      R M                PGSV     + K +V  V+
Sbjct:  366 REKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPGSVPIVSEKKKHVVAVVK 445          
BLAST of FG533774 vs. SwissProt
Match: DCA13_HUMAN (DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 9.337e-7
Identity = 26/80 (32.50%), Postives = 39/80 (48.75%), Query Frame = 3
Query:   15 REKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            REK   +Y++ +K+++ H P + RIARHRHLP+ +Y      R M                PGSV     + K +V  V+
Sbjct:  366 REKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPGSVPLVSEKKKHVVAVVK 445          
BLAST of FG533774 vs. TAIR peptide
Match: AT4G28450.1 (| Symbols: | nucleotide binding;protein binding | chr4:14061724-14064582 REVERSE LENGTH=452)

HSP 1 Score: 97.4413 bits (241), Expect = 4.667e-21
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 ILPREKKKHEYHEAIKKRYGHLPEVNRIARHRHLPRPVYKAAALMRTMXXXXXXXXXXXXXXXXPGSVTTKPLRVKRIVKEVE 254
            ILPRE+KKHEY+EA+K RY HL EV RI RHRHLP+P+YKA  ++RT+                PG+V T PLR ++I+KEVE
Sbjct:  370 ILPREQKKHEYNEAVKNRYKHLSEVKRIVRHRHLPKPIYKAMGIIRTVNDSKRRKEARRKAHSAPGTVVTAPLRKRKIIKEVE 452          
The following BLAST results are available for this feature:
BLAST of FG533774 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7MDC3_ARALY4.601e-2157.83AT4g28450/F20O9_130 OS=Arabidopsis lyrata subsp. l... [more]
B9RVU4_RICCO8.677e-2054.22U3 small nucleolar RNA (U3 snorna) associated prot... [more]
B9MYE4_POPTR1.933e-1953.01Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9HGQ7_POPTR2.525e-1953.01Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q93VK1_ARATH5.624e-1954.22AT4g28450/F20O9_130 OS=Arabidopsis thaliana GN=At4... [more]
Q8W4D9_ARATH5.624e-1954.22SOF1 protein-like protein OS=Arabidopsis thaliana ... [more]
O49454_ARATH5.624e-1954.22SOF1 protein-like protein OS=Arabidopsis thaliana ... [more]
C5XJI5_SORBI1.253e-1854.22Putative uncharacterized protein Sb03g000410 OS=So... [more]
C5WS04_SORBI2.791e-1854.22Putative uncharacterized protein Sb01g000780 OS=So... [more]
B6TTU7_MAIZE2.791e-1853.01Protein SOF1 OS=Zea mays PE=2 SV=1[more]
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BLAST of FG533774 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
DCA13_CHICK2.457e-733.73DDB1- and CUL4-associated factor 13 OS=Gallus gall... [more]
DCA13_XENTR3.209e-732.10DDB1- and CUL4-associated factor 13 OS=Xenopus tro... [more]
DCA13_XENLA3.209e-732.10DDB1- and CUL4-associated factor 13 OS=Xenopus lae... [more]
DCA13_PONAB9.337e-732.50DDB1- and CUL4-associated factor 13 OS=Pongo abeli... [more]
DCA13_HUMAN9.337e-732.50DDB1- and CUL4-associated factor 13 OS=Homo sapien... [more]
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BLAST of FG533774 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G28450.14.667e-2154.22| Symbols: | nucleotide binding;protein binding |... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007287Sof1-like proteinPFAMPF04158Sof1coord: 3..80
score: 4.3
NoneNo IPR availablePANTHERPTHR22851U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEINcoord: 2..84
score: 8.9
NoneNo IPR availableSEGsegsegcoord: 50..65
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FG533774 ID=FG533774; Name=FG533774; organism=Pisum sativum; type=EST; length=528bp
GAGCAATTCTCCCAAGAGAAAAGAAGAAGCATGAATATCACGAGGCGATA
AAGAAACGCTACGGACACCTTCCTGAAGTTAACCGTATCGCAAGGCATAG
ACACTTGCCAAGACCAGTATACAAAGCTGCTGCATTGATGCGCACTATGG
CGATTGCTAAGAAAAGAAAGCATGACAGGAGGAAAGCTCACAGTGCTCCG
GGGAGTGTTACAACAAAGCCGTTGCGCGTTAAAAGAATTGTCAAAGAAGT
TGAATGAGATTTTTGTGAGACAATGCATGCTGAAAAATGCAATAGATATT
TATGAAATGGCAGGAGTTTGTATACTGATTTGTTAGGAAGATAGATGGAT
ATGCAGCAGCATTGGTGAAAATCAATTGCTAGTTTTGTGATGCAAGAAAT
TTTGGTGTATTATTATTGAGTTTAGTGTACTTGATATTTTTCAGTTCAAA
TTAGTAAAAATGTGATGAAATATGAGACTATTGGAGCTCTAACAAAATCT
TCAATTCAATCAAAAGAAAATTGAAAAG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR007287Sof1