EX570066

EST Overview
NameEX570066
Unique NameEX570066
TypeEST
OrganismPisum sativum (pea)
Sequence length456
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
Homology
BLAST of EX570066 vs. TrEMBL
Match: D7KAQ2_ARALY (NRAMP2 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_891495 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.289e-10
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 3
Query:    3 VINGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQSGALPSALVD---RLPKGFSVTEN 188
            +INGYLL+DFFVSEV+G +FG   C  T  YIAF+VYLIS S   PS        LPK  SV+++
Sbjct:  468 IINGYLLLDFFVSEVDGFMFGVTVCVWTTAYIAFIVYLISHSNFFPSPWSSSSIELPKRVSVSDS 532          
BLAST of EX570066 vs. TrEMBL
Match: D7TTB5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_129.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00000173001 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.465e-8
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 3
Query:    3 VINGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLI 119
            +INGYLLVDFF SEVNG+L GF  C+ T  Y+AF++YL+
Sbjct:  349 IINGYLLVDFFSSEVNGLLIGFFICTFTAAYVAFIIYLV 387          
BLAST of EX570066 vs. TrEMBL
Match: B9GNS0_POPTR (Nramp transporter (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_412792 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.465e-8
Identity = 25/41 (60.98%), Postives = 36/41 (87.80%), Query Frame = 3
Query:    3 VINGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQ 125
            +INGYLL+DFF+SEV G+LFGF+  S TV Y++F++YL+S+
Sbjct:  441 LINGYLLIDFFISEVKGLLFGFLIGSGTVAYVSFIIYLVSR 481          
BLAST of EX570066 vs. TrEMBL
Match: Q2QN30_ORYSJ (Metal transporter Nramp2, putative, expressed OS=Oryza sativa subsp. japonica GN=Os12g0581600 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.473e-7
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 3
Query:    6 INGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQSGALPSALVDRLPKGFS 176
            INGYLL+DFF SE+ G+L G + C   + Y +F++YLI +   LP+ ++  + K FS
Sbjct:  485 INGYLLLDFFSSEIRGLLSGSILCVAVLAYASFVLYLILRGTELPNQIITTIRKSFS 541          
BLAST of EX570066 vs. TrEMBL
Match: A2ZM32_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38891 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.473e-7
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 3
Query:    6 INGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQSGALPSALVDRLPKGFS 176
            INGYLL+DFF SE+ G+L G + C   + Y +F++YLI +   LP+ ++  + K FS
Sbjct:  485 INGYLLLDFFSSEIRGLLSGSILCVAVLAYASFVLYLILRGTELPNQIITTIRKSFS 541          
BLAST of EX570066 vs. SwissProt
Match: NRAM2_ARATH (Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.216e-11
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 3
Query:    3 VINGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQSGALPSALVD---RLPKGFSVTEN 188
            +INGYLL+DFFVSEV+G LFG   C  T  YIAF+VYLIS S   PS        LPK  SV+ +
Sbjct:  466 IINGYLLLDFFVSEVDGFLFGVTVCVWTTAYIAFIVYLISHSNFFPSPWSSSSIELPKRVSVSNS 530          
BLAST of EX570066 vs. TAIR peptide
Match: AT1G47240.1 (| Symbols: NRAMP2, ATNRAMP2 | NRAMP metal ion transporter 2 | chr1:17309043-17311308 REVERSE LENGTH=530)

HSP 1 Score: 67.3958 bits (163), Expect = 3.867e-12
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 3
Query:    3 VINGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQSGALPSALVD---RLPKGFSVTEN 188
            +INGYLL+DFFVSEV+G LFG   C  T  YIAF+VYLIS S   PS        LPK  SV+ +
Sbjct:  466 IINGYLLLDFFVSEVDGFLFGVTVCVWTTAYIAFIVYLISHSNFFPSPWSSSSIELPKRVSVSNS 530          
BLAST of EX570066 vs. TAIR peptide
Match: AT4G18790.1 (| Symbols: NRAMP5, ATNRAMP5 | NRAMP metal ion transporter family protein | chr4:10317785-10319660 REVERSE LENGTH=530)

HSP 1 Score: 50.8322 bits (120), Expect = 3.746e-7
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 3
Query:    3 VINGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQSGALPSA 146
            +INGYLL+DFF++EV G L GF+     V YI+F++YL+S   +  S+
Sbjct:  468 MINGYLLLDFFMAEVEGFLVGFLVFGGVVGYISFIIYLVSYRSSQSSS 515          
The following BLAST results are available for this feature:
BLAST of EX570066 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
D7KAQ2_ARALY5.289e-1053.85NRAMP2 OS=Arabidopsis lyrata subsp. lyrata GN=ARAL... [more]
D7TTB5_VITVI6.465e-864.10Whole genome shotgun sequence of line PN40024, sca... [more]
B9GNS0_POPTR6.465e-860.98Nramp transporter (Fragment) OS=Populus trichocarp... [more]
Q2QN30_ORYSJ5.473e-743.86Metal transporter Nramp2, putative, expressed OS=O... [more]
A2ZM32_ORYSI5.473e-743.86Putative uncharacterized protein OS=Oryza sativa s... [more]
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BLAST of EX570066 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
NRAM2_ARATH3.216e-1155.38Metal transporter Nramp2 OS=Arabidopsis thaliana G... [more]
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BLAST of EX570066 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G47240.13.867e-1255.38| Symbols: NRAMP2, ATNRAMP2 | NRAMP metal ion tran... [more]
AT4G18790.13.746e-747.92| Symbols: NRAMP5, ATNRAMP5 | NRAMP metal ion tran... [more]
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Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX570066 ID=EX570066; Name=EX570066; organism=Pisum sativum; type=EST; length=456bp
TAGTAATTAATGGCTATCTCTTGGTAGATTTCTTCGTTTCTGAGGTGAAC
GGTGTATTGTTTGGTTTTGTAGCCTGCTCTTGCACAGTTTTATACATTGC
ATTCCTTGTATATTTAATTTCACAAAGTGGCGCTCTTCCTTCCGCATTGG
TGGATCGACTTCCAAAGGGATTTTCCGTTACTGAGAACTAAACCAACATA
AGTCACAGCATTGAATATATGGAAATAGCACGGCAAGCCTCAGCTAGACA
ATTTTGCTTGATAAGTTTTACTCATACACTGTGAAGGATGCATTAGAGTT
CCTCCAACCCTGCAATGGGGATTAAAGGATGTACAAGGTCAGATAGGGAA
AAGAACCTAGGTTTAACCGCTCCTGTTTTATCCAATAGGGTTATAGAGGT
TACCTACAACGTGTAAACAAGACGATAATGGAAGATGTGGAGAGAGCATC
GTTACA
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