EX570440

EST Overview


Name	EX570440
Unique Name	EX570440
Type	EST
Organism	Pisum sativum (pea)
Sequence length	381

Libraries


Library Name	Type
LIBEST_021973 Pisum sativum shoot apical meristem ESTs	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of EX570440 vs. TrEMBL
Match: C6SWA6_SOYBN (Histone H2A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.812e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT+ AS
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERAS 133

[Close]

BLAST of EX570440 vs. TrEMBL
Match: C6TMV8_SOYBN (Histone H2A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.674e-11
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSA 110
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQ A
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQVA 132

[Close]

BLAST of EX570440 vs. TrEMBL
Match: B9T4D5_RICCO (Histone H2A OS=Ricinus communis GN=RCOM_0390300 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.674e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT+ A+
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTEKAT 133

[Close]

BLAST of EX570440 vs. TrEMBL
Match: B9T4D3_RICCO (Histone H2A OS=Ricinus communis GN=RCOM_0390180 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.674e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT+ A+
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTEKAT 133

[Close]

BLAST of EX570440 vs. TrEMBL
Match: B9HBE5_POPTR (Histone H2A (Fragment) OS=Populus trichocarpa GN=HTA915 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.674e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT+ A+
Sbjct:   84 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTEKAA 120

[Close]

BLAST of EX570440 vs. TrEMBL
Match: B7EDG0_ORYSJ (Histone H2A OS=Oryza sativa subsp. japonica GN=OsJ_18822 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.674e-11
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT SA+
Sbjct:  100 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAA 136

[Close]

BLAST of EX570440 vs. TrEMBL
Match: A9PDX1_POPTR (Histone H2A OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.674e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT+ A+
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTEKAA 133

[Close]

BLAST of EX570440 vs. TrEMBL
Match: C6SZZ2_SOYBN (Histone H2A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.186e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT+ A+
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERAA 133

[Close]

BLAST of EX570440 vs. TrEMBL
Match: C6TG01_SOYBN (Histone H2A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.855e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK++ AS
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERAS 133

[Close]

BLAST of EX570440 vs. TrEMBL
Match: C5YZA9_SORBI (Histone H2A OS=Sorghum bicolor GN=Sb09g022690 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.855e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT +A+
Sbjct:   99 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAAAA 135

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.817e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSASTT 119
            RNDEELGKLLAGVTIAHGGVLPNINP+LLPKK + A+TT
Sbjct:   96 RNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKAATT 134

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.679e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAST 116
            RNDEELGKLLAGVTIAHGGVLPNINP+LLPKKT+ A+T
Sbjct:   98 RNDEELGKLLAGVTIAHGGVLPNINPILLPKKTERANT 135

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.275e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAST 116
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT+ ++T
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERSNT 134

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.195e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT SA+
Sbjct:  100 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAA 136

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.195e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT SA+
Sbjct:  100 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAA 136

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.114e-12
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAS 113
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK + A+
Sbjct:   97 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKAEKAA 133

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.312e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 101
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT
Sbjct:   99 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.312e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 101
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT
Sbjct:   99 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.312e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 101
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT
Sbjct:  102 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134

[Close]

BLAST of EX570440 vs. SwissProt
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.312e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 101
            RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT
Sbjct:  102 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT5G02560.2 (| Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=177)

HSP 1 Score: 68.5514 bits (166), Expect = 1.110e-12
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSASTT 119
            RNDEELG LL GVTIAHGGVLPNINP+LLPKK++ A++T
Sbjct:  122 RNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAAST 160

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT5G02560.1 (| Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153)

HSP 1 Score: 68.5514 bits (166), Expect = 1.110e-12
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSASTT 119
            RNDEELG LL GVTIAHGGVLPNINP+LLPKK++ A++T
Sbjct:   98 RNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAAST 136

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT5G59870.1 (| Symbols: HTA6 | histone H2A 6 | chr5:24115605-24116144 REVERSE LENGTH=150)

HSP 1 Score: 63.929 bits (154), Expect = 2.734e-11
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 101
            RNDEELGKLL+GVTIAHGGVLPNIN VLLPKK+
Sbjct:   98 RNDEELGKLLSGVTIAHGGVLPNINSVLLPKKS 130

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT5G27670.1 (| Symbols: HTA7 | histone H2A 7 | chr5:9792807-9793365 REVERSE LENGTH=150)

HSP 1 Score: 63.5438 bits (153), Expect = 3.570e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSAST 116
            RNDEELG+LL GVTIA GGVLPNINPVLLPKK+ ++S+
Sbjct:   99 RNDEELGRLLHGVTIASGGVLPNINPVLLPKKSTASSS 136

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT4G27230.2 (| Symbols: HTA2 | histone H2A 2 | chr4:13637515-13638325 REVERSE LENGTH=131)

HSP 1 Score: 53.9138 bits (128), Expect = 2.829e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSASTT 119
            RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK  S+  T
Sbjct:   90 RNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKPT 128

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT4G27230.1 (| Symbols: HTA2 | histone H2A 2 | chr4:13637515-13638325 REVERSE LENGTH=131)

HSP 1 Score: 53.9138 bits (128), Expect = 2.829e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTQSASTT 119
            RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK  S+  T
Sbjct:   90 RNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGSSKPT 128

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT1G51060.1 (| Symbols: HTA10 | histone H2A 10 | chr1:18926948-18927443 FORWARD LENGTH=132)

HSP 1 Score: 53.1434 bits (126), Expect = 4.825e-8
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 101
            RNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT
Sbjct:   90 RNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT3G20670.1 (| Symbols: HTA13 | histone H2A 13 | chr3:7229472-7229963 FORWARD LENGTH=132)

HSP 1 Score: 51.6026 bits (122), Expect = 1.404e-7
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 98
            RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK
Sbjct:   90 RNDEELSKLLGDVTIANGGVMPNIHSLLLPKK 121

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT5G54640.1 (| Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily protein | chr5:22196540-22197279 FORWARD LENGTH=130)

HSP 1 Score: 51.2174 bits (121), Expect = 1.834e-7
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 98
            RNDEEL KLL  VTIA+GGV+PNI+ +LLPKK
Sbjct:   90 RNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 121

[Close]

BLAST of EX570440 vs. TAIR peptide
Match: AT1G54690.1 (| Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142)

HSP 1 Score: 50.447 bits (119), Expect = 3.128e-7
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 3

Query:    3 RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 98
            RNDEEL KLL  VTIA+GGVLPNI+  LLP K
Sbjct:   96 RNDEELSKLLGSVTIANGGVLPNIHQTLLPSK 127

The following BLAST results are available for this feature:

BLAST of EX570440 vs. TrEMBL
BLAST of EX570440 vs. SwissProt
BLAST of EX570440 vs. TAIR peptide

BLAST of EX570440 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SWA6_SOYBN	9.812e-12	94.59	Histone H2A OS=Glycine max PE=2 SV=1	[more]
C6TMV8_SOYBN	1.674e-11	97.22	Histone H2A OS=Glycine max PE=2 SV=1	[more]
B9T4D5_RICCO	1.674e-11	91.89	Histone H2A OS=Ricinus communis GN=RCOM_0390300 PE...	[more]
B9T4D3_RICCO	1.674e-11	91.89	Histone H2A OS=Ricinus communis GN=RCOM_0390180 PE...	[more]
B9HBE5_POPTR	1.674e-11	91.89	Histone H2A (Fragment) OS=Populus trichocarpa GN=H...	[more]
B7EDG0_ORYSJ	1.674e-11	94.59	Histone H2A OS=Oryza sativa subsp. japonica GN=OsJ...	[more]
A9PDX1_POPTR	1.674e-11	91.89	Histone H2A OS=Populus trichocarpa PE=2 SV=1	[more]
C6SZZ2_SOYBN	2.186e-11	91.89	Histone H2A OS=Glycine max PE=2 SV=1	[more]
C6TG01_SOYBN	2.855e-11	91.89	Histone H2A OS=Glycine max PE=2 SV=1	[more]
C5YZA9_SORBI	2.855e-11	91.89	Histone H2A OS=Sorghum bicolor GN=Sb09g022690 PE=3...	[more]

BLAST of EX570440 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
H2A1_MEDTR	2.817e-13	87.18	Probable histone H2A.1 OS=Medicago truncatula GN=M...	[more]
H2A3_MEDTR	3.679e-13	89.47	Probable histone H2A.3 OS=Medicago truncatula PE=3...	[more]
H2A2_MEDTR	6.275e-13	89.47	Probable histone H2A.2 OS=Medicago truncatula GN=M...	[more]
H2A4_ORYSJ	8.195e-13	94.59	Probable histone H2A.4 OS=Oryza sativa subsp. japo...	[more]
H2A4_ORYSI	8.195e-13	94.59	Probable histone H2A.4 OS=Oryza sativa subsp. indi...	[more]
H2A_EUPES	3.114e-12	89.19	Histone H2A OS=Euphorbia esula PE=2 SV=1	[more]
H2A6_ORYSJ	5.312e-12	100.00	Probable histone H2A.6 OS=Oryza sativa subsp. japo...	[more]
H2A6_ORYSI	5.312e-12	100.00	Probable histone H2A.6 OS=Oryza sativa subsp. indi...	[more]
H2A5_ORYSJ	5.312e-12	100.00	Probable histone H2A.5 OS=Oryza sativa subsp. japo...	[more]
H2A5_ORYSI	5.312e-12	100.00	Probable histone H2A.5 OS=Oryza sativa subsp. indi...	[more]

BLAST of EX570440 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT5G02560.2	1.110e-12	79.49	\| Symbols: HTA12 \| histone H2A 12 \| chr5:575437-57...	[more]
AT5G02560.1	1.110e-12	79.49	\| Symbols: HTA12 \| histone H2A 12 \| chr5:575437-57...	[more]
AT5G59870.1	2.734e-11	90.91	\| Symbols: HTA6 \| histone H2A 6 \| chr5:24115605-24...	[more]
AT5G27670.1	3.570e-11	78.95	\| Symbols: HTA7 \| histone H2A 7 \| chr5:9792807-979...	[more]
AT4G27230.2	2.829e-8	66.67	\| Symbols: HTA2 \| histone H2A 2 \| chr4:13637515-13...	[more]
AT4G27230.1	2.829e-8	66.67	\| Symbols: HTA2 \| histone H2A 2 \| chr4:13637515-13...	[more]
AT1G51060.1	4.825e-8	75.76	\| Symbols: HTA10 \| histone H2A 10 \| chr1:18926948-...	[more]
AT3G20670.1	1.404e-7	75.00	\| Symbols: HTA13 \| histone H2A 13 \| chr3:7229472-7...	[more]
AT5G54640.1	1.834e-7	75.00	\| Symbols: HTA1, RAT5, ATHTA1 \| Histone superfamil...	[more]
AT1G54690.1	3.128e-7	75.00	\| Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX \| gamma...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 9..33 score
None	No IPR available	SEG	seg	seg	coord: 37..53 score
IPR002119	Histone H2A	PANTHER	PTHR23430	HISTONE H2A	coord: 1..53 score: 4.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	no description	coord: 1..37 score: 8.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 1..38 score: 5.5

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EX570440 ID=EX570440; Name=EX570440; organism=Pisum sativum; type=EST; length=381bp
TGAGGAATGATGAAGAGCTTGGAAAATTGCTTGCTGGTGTTACCATTGCT
CATGGTGGTGTTCTTCCTAACATTAACCCTGTGCTTTTGCCTAAGAAGAC
TCAAAGTGCTTCTACAACTCCCAAGTCTCCATCAAAGGCCAGGAAATCTC
CAAAGAAAGCTTAGATGTTAGAATTTGTGTTTTTTGGTTCTGTGTGGGTA
ACTTAGATTTGGCACACCTCTCATGTGTCATAGAGTTATTCAATGTATGC
CAAAAAAACGTAATTCGAATGTCTTTGTATCTCGTTTATGAGTTTGATTG
GTTGATGAAATCTATTTGCTTTTTTAGTCAATCCTGTTTAACAAGTTCAA
GTACTTTGATGTTTATTACAGATTAACAATA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR009072	Histone-fold

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