GH720838

EST Overview
NameGH720838
Unique NameGH720838
TypeEST
OrganismPisum sativum (pea)
Sequence length562
Libraries
Library NameType
LIBEST_024273 BACNIcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
KEGG analysis for Pisum sativum unigene v12011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of GH720838 vs. TrEMBL
Match: Q2HS28_MEDTR (Transcription factor IIA, helical OS=Medicago truncatula GN=MtrDRAFT_AC157503g33v2 PE=4 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.413e-45
Identity = 91/116 (78.45%), Postives = 97/116 (83.62%), Query Frame = 3
Query:   36 TPNYNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMN--QRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIE 377
            TPNYNIPTGPSDYSS GN+ GGNADVKGGR + FM PPSPWMN  QRPPLDVNV+YVEGR+EADRGASNQPMTQDFFT+ GGKRKRND+PPPYD GGYIPQQ          FEIE
Sbjct:  117 TPNYNIPTGPSDYSS-GNDAGGNADVKGGRQA-FMPPPSPWMNMNQRPPLDVNVAYVEGRDEADRGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGYIPQQDGAGDAVSGDFEIE 230          
BLAST of GH720838 vs. TrEMBL
Match: B9S3E9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0733160 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.026e-43
Identity = 95/174 (54.60%), Postives = 113/174 (64.94%), Query Frame = 3
Query:   45 YNIPTGP-SDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIEVCGGSISFSSQHTNSKGKMPADLERLTS------RIPQLDGPIPYE-DDVLSTPNIYYNGGV 542
            YNIPTGP S+Y +  +++GG+ + K GRPSP+MQPPSPW+NQRPPLDVN++YVEGREEADRG SNQP+TQDFFT   GKRKR D    Y+ GG+IPQQ                 G   F          + AD+E L+S      +IPQLDGPIP   DDVLSTPNIY   GV
Sbjct:  120 YNIPTGPTSEYPTPVSDSGGSTEAKAGRPSPYMQPPSPWINQRPPLDVNIAYVEGREEADRGTSNQPLTQDFFTGASGKRKREDFAAQYNNGGFIPQQDG--------------AGDTPFEVLQVERDTVISADIEILSSVTRRGLKIPQLDGPIPDPYDDVLSTPNIYNYQGV 279          
BLAST of GH720838 vs. TrEMBL
Match: D7SKA9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024907001 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.788e-40
Identity = 93/172 (54.07%), Postives = 109/172 (63.37%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPL--DVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIEVCGGSISFSSQH--TNSKGKMPADLERLTSRIPQLDGPI--PYEDDVLSTPNIYYNGGV 542
            YNIPTGP++Y ++  + GG  D+K GRP  +M PPSPWM QRPPL  DVNV+YVEGR+E DRG S QP+TQDFF +  GKRKR D P  Y   GYIPQQ          FE+EV  GS S       T +  ++   +     RIPQLDGPI  PYE DVLSTPNIY   GV
Sbjct:  121 YNIPTGPTEYPAA-QDGGGATDMKSGRPPSYMPPPSPWMQQRPPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGYIPQQDGAGDPAPEVFEVEVSQGSNSIKGHDILTKANREIFPQVAGSYVRIPQLDGPIPDPYE-DVLSTPNIYNYQGV 290          
BLAST of GH720838 vs. TrEMBL
Match: B9GJ87_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_706098 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.159e-33
Identity = 86/180 (47.78%), Postives = 106/180 (58.89%), Query Frame = 3
Query:   45 YNIPTGPS-DYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVN------------VSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIEVCGGSISFSSQHTNSKGKMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIYYNGGV 542
            YNI TG S DY +  ++ GG+ DVK GRPS FMQ PSP M+QRPPLDVN            V+YVEGR+E DRG S+Q +TQDFF +  GKRKR D  P Y+ GG+IPQQ           ++E            T    ++ A + R   +IPQ+DGPIP   DD+LSTPNIY   GV
Sbjct:  135 YNISTGSSSDYPTPVSDAGGSTDVKAGRPSHFMQSPSPLMHQRPPLDVNVGKVLTNKCCAFVAYVEGRDEVDRGGSHQTLTQDFF-MSSGKRKRGDFAPKYNNGGFIPQQDGAVDSASEVSQVE--------CDTITTKNREILARVSRSYVKIPQVDGPIPDPYDDMLSTPNIYNYQGV 305          
BLAST of GH720838 vs. TrEMBL
Match: Q93VP4_ARATH (At1g07470/F22G5_13 OS=Arabidopsis thaliana GN=At1g07470 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.043e-33
Identity = 84/166 (50.60%), Postives = 100/166 (60.24%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIEVCGGSISFSSQHTNSKGKMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIY-YNG 536
            YNIPTG SDY + G E G N DVK  RPSP+M PPSPW N  P LDVNV+YV+GR+E +RG SNQ  TQD F    GKRKR+D    Y  GG IPQQ             E     I++         K+P DL   +S+IPQ+DGP+P   D++LSTPNIY Y G
Sbjct:  118 YNIPTGSSDYPTPGTENGVNIDVKA-RPSPYMPPPSPWTN--PRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDAIPEA-NFECAALRITYVGDR-----KIPRDLIGSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG 274          
BLAST of GH720838 vs. TrEMBL
Match: D7KH29_ARALY (Transcription factor IIA large subunit OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_470774 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.372e-32
Identity = 84/168 (50.00%), Postives = 102/168 (60.71%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIEVCGGSISFSSQHTNSKG--KMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIY-YNG 536
            YNIPTG SDY++ G E G N DVKG RPSP+M PPSPW N  P LDVNV+YV+GR+E +RG SNQ  TQD F    GKRKR+D    Y  GG IPQQ              +   +    +    S G  K+P D    +S+IPQ+DGP+P   D++LSTPNIY Y G
Sbjct:  118 YNIPTGSSDYTTPGTENGVNLDVKG-RPSPYMPPPSPWAN--PRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGASD--------TIPKANFECYALRITSVGDRKVPRDFFCSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG 274          
BLAST of GH720838 vs. TrEMBL
Match: O49349_ARATH (AT1G07480 protein OS=Arabidopsis thaliana GN=TFIIA-L PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.214e-32
Identity = 84/167 (50.30%), Postives = 101/167 (60.48%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQ-XXXXXXXXXXFEIEVCGGSISFSSQHTNSKGKMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIY-YNG 536
            YNIPTG SDY + G E G N DVK  RPSP+M PPSPW N  P LDVNV+YV+GR+E +RG SNQ  TQD F    GKRKR+D    Y  GG IPQQ           FE +      +F       + K+P D    +S+IPQ+DGP+P   D++LSTPNIY Y G
Sbjct:  118 YNIPTGSSDYPTPGTENGVNIDVKA-RPSPYMPPPSPWTN--PRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECD------AFRITSIGDR-KVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG 274          
BLAST of GH720838 vs. TrEMBL
Match: Q9LNX1_ARATH (F22G5.14 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.981e-31
Identity = 83/173 (47.98%), Postives = 100/173 (57.80%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFE-----IEVCGGSISFSSQHTNSKG--KMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIY-YNG 536
            YNIPTG SDY + G E G N DVK  RPSP+M PPSPW N  P LDVNV+YV+GR+E +RG SNQ  TQD F    GKRKR+D    Y  GG IPQQ                   +   +    +    S G  K+P D    +S+IPQ+DGP+P   D++LSTPNIY Y G
Sbjct:  118 YNIPTGSSDYPTPGTENGVNIDVKA-RPSPYMPPPSPWTN--PRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEYLVDTPDWSTILQANFECDAFRITSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG 287          
BLAST of GH720838 vs. TrEMBL
Match: A5C3D6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039114 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.832e-31
Identity = 65/113 (57.52%), Postives = 77/113 (68.14%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPL--DVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIE 377
            YNIPTGP++Y ++  + GG  D+K GRP  +M PPSPWM QRPPL  DVNV+YVEGR+E DRG S QP+TQDFF +  GKRKR D P  Y   GYIPQQ          FE+E
Sbjct:  121 YNIPTGPTEYPAA-QDGGGATDMKSGRPPSYMPPPSPWMQQRPPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGYIPQQDGAGDPAPEVFEVE 232          
BLAST of GH720838 vs. TrEMBL
Match: B9HPD1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_876038 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.420e-29
Identity = 80/174 (45.98%), Postives = 102/174 (58.62%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFM-------QPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIEVCGGSISFSSQHTNSKGKMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIYYNGGV 542
            YNIPTG SDY +  ++ GG+ D K GRPSPFM       QP     N+       V+YVEGR+E DRG S+Q +TQDFF +P GKRKR D  P Y+ GG+IPQQ           ++E     ++ +S  T    ++ A + R   +IPQ+DGPIP   DDVLSTPNIY   GV
Sbjct:  131 YNIPTGSSDYPTPVSDAGGSTDGKAGRPSPFMVSTDLIFQPSLVLTNK---CCAFVAYVEGRDEVDRGTSHQALTQDFF-MPSGKRKREDFAPKYNNGGFIPQQDGAGDSASEVSQVE-----LNVNSYFTTKNKEILARVSRSYLKIPQVDGPIPDPYDDVLSTPNIYNYQGV 295          
BLAST of GH720838 vs. TAIR peptide
Match: AT1G07470.1 (| Symbols: | Transcription factor IIA, alpha/beta subunit | chr1:2291723-2294350 FORWARD LENGTH=375)

HSP 1 Score: 143.665 bits (361), Expect = 6.449e-35
Identity = 84/166 (50.60%), Postives = 100/166 (60.24%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQXXXXXXXXXXFEIEVCGGSISFSSQHTNSKGKMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIY-YNG 536
            YNIPTG SDY + G E G N DVK  RPSP+M PPSPW N  P LDVNV+YV+GR+E +RG SNQ  TQD F    GKRKR+D    Y  GG IPQQ             E     I++         K+P DL   +S+IPQ+DGP+P   D++LSTPNIY Y G
Sbjct:  118 YNIPTGSSDYPTPGTENGVNIDVKA-RPSPYMPPPSPWTN--PRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDAIPEA-NFECAALRITYVGDR-----KIPRDLIGSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG 274          
BLAST of GH720838 vs. TAIR peptide
Match: AT1G07480.2 (| Symbols: | Transcription factor IIA, alpha/beta subunit | chr1:2296706-2299215 REVERSE LENGTH=375)

HSP 1 Score: 140.969 bits (354), Expect = 4.180e-34
Identity = 84/167 (50.30%), Postives = 101/167 (60.48%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQ-XXXXXXXXXXFEIEVCGGSISFSSQHTNSKGKMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIY-YNG 536
            YNIPTG SDY + G E G N DVK  RPSP+M PPSPW N  P LDVNV+YV+GR+E +RG SNQ  TQD F    GKRKR+D    Y  GG IPQQ           FE +      +F       + K+P D    +S+IPQ+DGP+P   D++LSTPNIY Y G
Sbjct:  118 YNIPTGSSDYPTPGTENGVNIDVKA-RPSPYMPPPSPWTN--PRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECD------AFRITSIGDR-KVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG 274          
BLAST of GH720838 vs. TAIR peptide
Match: AT1G07480.1 (| Symbols: | Transcription factor IIA, alpha/beta subunit | chr1:2296706-2299215 REVERSE LENGTH=375)

HSP 1 Score: 140.969 bits (354), Expect = 4.180e-34
Identity = 84/167 (50.30%), Postives = 101/167 (60.48%), Query Frame = 3
Query:   45 YNIPTGPSDYSSSGNETGGNADVKGGRPSPFMQPPSPWMNQRPPLDVNVSYVEGREEADRGASNQPMTQDFFTVPGGKRKRNDMPPPYDVGGYIPQQ-XXXXXXXXXXFEIEVCGGSISFSSQHTNSKGKMPADLERLTSRIPQLDGPIPYE-DDVLSTPNIY-YNG 536
            YNIPTG SDY + G E G N DVK  RPSP+M PPSPW N  P LDVNV+YV+GR+E +RG SNQ  TQD F    GKRKR+D    Y  GG IPQQ           FE +      +F       + K+P D    +S+IPQ+DGP+P   D++LSTPNIY Y G
Sbjct:  118 YNIPTGSSDYPTPGTENGVNIDVKA-RPSPYMPPPSPWTN--PRLDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIPEANFECD------AFRITSIGDR-KVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQG 274          
The following BLAST results are available for this feature:
BLAST of GH720838 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q2HS28_MEDTR1.413e-4578.45Transcription factor IIA, helical OS=Medicago trun... [more]
B9S3E9_RICCO5.026e-4354.60Putative uncharacterized protein OS=Ricinus commun... [more]
D7SKA9_VITVI1.788e-4054.07Whole genome shotgun sequence of line PN40024, sca... [more]
B9GJ87_POPTR6.159e-3347.78Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
Q93VP4_ARATH8.043e-3350.60At1g07470/F22G5_13 OS=Arabidopsis thaliana GN=At1g... [more]
D7KH29_ARALY1.372e-3250.00Transcription factor IIA large subunit OS=Arabidop... [more]
O49349_ARATH5.214e-3250.30AT1G07480 protein OS=Arabidopsis thaliana GN=TFIIA... [more]
Q9LNX1_ARATH1.981e-3147.98F22G5.14 OS=Arabidopsis thaliana PE=4 SV=1[more]
A5C3D6_VITVI9.832e-3157.52Putative uncharacterized protein OS=Vitis vinifera... [more]
B9HPD1_POPTR1.420e-2945.98Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GH720838 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G07470.16.449e-3550.60| Symbols: | Transcription factor IIA, alpha/beta... [more]
AT1G07480.24.180e-3450.30| Symbols: | Transcription factor IIA, alpha/beta... [more]
AT1G07480.14.180e-3450.30| Symbols: | Transcription factor IIA, alpha/beta... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004855Transcription factor IIA, alpha/beta subunitPANTHERPTHR12694TFIIA LARGE SUBUNIT-RELATEDcoord: 15..174
score: 5.8
NoneNo IPR availablePANTHERPTHR12694:SF2TFIIA LARGE SUBUNIT-ARABIDOPSIScoord: 15..174
score: 5.8
NoneNo IPR availableSEGsegsegcoord: 1..11
score: NAcoord: 112..121
score
NoneNo IPR availableSEGsegsegcoord: 78..89
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GH720838 ID=GH720838; Name=GH720838; organism=Pisum sativum; type=EST; length=562bp
TTCGAGCGGCCGCCCGGGCAGGTGAGCNTGGGGAGACCCCAAATTATAAC
ATTCCTACTGGACCAAGTGACTACTCTTCTTCTGGAAATGAAACCGGTGG
AAATGCTGATGTTAAAGGTGGAAGACCAAGTCCATTCATGCAACCTCCTT
CTCCTTGGATGAATCAGAGGCCTCCACTTGATGTCAATGTTTCTTATGTG
GAAGGACGGGAAGAGGCAGATAGAGGAGCTTCTAATCAGCCTATGACACA
AGATTTCTTCACAGTGCCTGGTGGAAAGCGTAAACGCAATGATATGCCTC
CACCATATGATGTTGGAGGGTATATACCTCAGCAAGATGGAGCTGGTGAT
GCTGGATCCGGCGATTTTGAAATTGAGGTATGTGGAGGGAGCATCTCCTT
CAGTTCACAACACACTAATTCAAAAGGGAAAATGCCCGCAGACTTGGAGA
GACTGACTTCTAGGATTCCTCAACTTGATGGACCAATTCCTTACGAGGAT
GATGTGCTTTCAACTCCAAATATATACTATAATGGTGGAGTGCACCTCGG
CCGCGACCACGC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003702obsolete RNA polymerase II transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation at RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR004855TFIIA_asu/bsu