GH720931

EST Overview
NameGH720931
Unique NameGH720931
TypeEST
OrganismPisum sativum (pea)
Sequence length380
Libraries
Library NameType
LIBEST_024273 BACNIcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of GH720931 vs. TrEMBL
Match: B9H9T2_POPTR (ABC transporter family, cholesterol/phospholipid flippase OS=Populus trichocarpa GN=PtrAOH1 PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.127e-42
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLMCST 364
            RIGIMVGG+LRCIGSPQ+LKTRFGN LELEVKPTEVSSVDL+ LCQ IQ  LFD+PS PRSL++D+E+CIG  DS +S N S+ EISL+ +MI LIGRWLGNEERVKTL+ ST
Sbjct: 1670 RIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLENLCQTIQSRLFDIPSHPRSLLDDIEVCIGRIDSITSENASVMEISLSQEMIILIGRWLGNEERVKTLVSST 1782          
BLAST of GH720931 vs. TrEMBL
Match: D7THU8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033258001 PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.520e-39
Identity = 80/113 (70.80%), Postives = 96/113 (84.96%), Query Frame = 2
Query:   26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLMCST 364
            RIGIMVGG+LRCIGS Q+LKTRFGN LELEVKPTEVS VDL+ LC+ IQE LF +P  PRS+++DLE+CIG  DS +S N S+AEISL+P+MI +IGRWLGNEER+ TL+ ST
Sbjct: 1782 RIGIMVGGRLRCIGSSQHLKTRFGNHLELEVKPTEVSHVDLENLCRFIQERLFHIP-HPRSILSDLEVCIGAVDSITSENASVAEISLSPEMIVMIGRWLGNEERISTLVSST 1893          
BLAST of GH720931 vs. TrEMBL
Match: B9SU42_RICCO (Abc transporter, putative OS=Ricinus communis GN=RCOM_1216160 PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.041e-37
Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = 2
Query:   26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLMCSTSAA 373
            RIGIMVGG+LRCIGSPQ+LKTRFGN LELEVKP EVS V+L+ LCQ IQ  L ++PS PRSL+NDLEICIG  D  +S N S AEI L+ +MI +IG+WLGNEERV TL  S+S +
Sbjct: 1527 RIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPAEVSPVELENLCQIIQGRLLNIPSYPRSLLNDLEICIGAVDFITSENASAAEIRLSKEMILMIGQWLGNEERVNTLFSSSSTS 1642          
BLAST of GH720931 vs. TrEMBL
Match: D7LHA5_ARALY (ATPase, coupled to transmembrane movement of substances OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483249 PE=4 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.077e-34
Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = 2
Query:   26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLM 355
            RIGIMVGG+LRCIGSPQ+LKTR+GN LELEVKP EVSS +L+  CQ IQ+ LF+VP+QPRSL+ DLE+CIG +DS +    S +EISL+P+M+  I ++LGNE+RV TL+
Sbjct: 1692 RIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSSEELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQSIAKFLGNEQRVSTLV 1801          
BLAST of GH720931 vs. TrEMBL
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily OS=Ectocarpus siliculosus GN=Esi_0359_0018 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.277e-7
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 2
Query:   26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSL 211
            RIGIMVGG++RC+GS Q+LKTRFG   +LE +   VS  D+ A+   I        S P  L
Sbjct: 1772 RIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAVSPTDIDAMLATIAPATGGQASLPSEL 1833          
BLAST of GH720931 vs. SwissProt
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.368e-36
Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLM 355
            RIGIMVGG+LRCIGSPQ+LKTR+GN LELEVKP EVS+V+L+  CQ IQ+ LF+VP+QPRSL+ DLE+CIG +DS +    S +EISL+P+M+  I ++LGNE+RV TL+
Sbjct: 1660 RIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLV 1769          
BLAST of GH720931 vs. TAIR peptide
Match: AT2G41700.1 (| Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17396110 REVERSE LENGTH=1882)

HSP 1 Score: 150.599 bits (379), Expect = 2.221e-37
Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLM 355
            RIGIMVGG+LRCIGSPQ+LKTR+GN LELEVKP EVS+V+L+  CQ IQ+ LF+VP+QPRSL+ DLE+CIG +DS +    S +EISL+P+M+  I ++LGNE+RV TL+
Sbjct: 1660 RIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLV 1769          
BLAST of GH720931 vs. TAIR peptide
Match: AT2G41700.2 (| Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17395932 REVERSE LENGTH=1846)

HSP 1 Score: 144.05 bits (362), Expect = 2.078e-35
Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = 2
Query:   26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEV------KPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLM 355
            RIGIMVGG+LRCIGSPQ+LKTR+GN LELEV      KP EVS+V+L+  CQ IQ+ LF+VP+QPRSL+ DLE+CIG +DS +    S +EISL+P+M+  I ++LGNE+RV TL+
Sbjct: 1618 RIGIMVGGRLRCIGSPQHLKTRYGNHLELEVPFYNGVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLV 1733          
The following BLAST results are available for this feature:
BLAST of GH720931 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
B9H9T2_POPTR3.127e-4275.22ABC transporter family, cholesterol/phospholipid f... [more]
D7THU8_VITVI5.520e-3970.80Whole genome shotgun sequence of line PN40024, sca... [more]
B9SU42_RICCO1.041e-3768.10Abc transporter, putative OS=Ricinus communis GN=R... [more]
D7LHA5_ARALY1.077e-3464.55ATPase, coupled to transmembrane movement of subst... [more]
D7FZA6_ECTSI7.277e-746.77ATP-binding Cassette (ABC) Superfamily OS=Ectocarp... [more]
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BLAST of GH720931 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
AB1A_ARATH2.368e-3664.55ABC transporter A family member 1 OS=Arabidopsis t... [more]
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BLAST of GH720931 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G41700.12.221e-3764.55| Symbols: ABCA1, AtABCA1 | ATP-binding cassette A... [more]
AT2G41700.22.078e-3561.21| Symbols: ABCA1, AtABCA1 | ATP-binding cassette A... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19229ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A (ABCA)coord: 9..57
score: 6.1
NoneNo IPR availablePANTHERPTHR19229:SF26ABC TRANSPORTERcoord: 9..57
score: 6.1

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GH720931 ID=GH720931; Name=GH720931; organism=Pisum sativum; type=EST; length=380bp
TTCGAGCGGCCGCCCGGGCAGGTACAGAATAGGGATTATGGTTGGTGGAC
AACTAAGATGTATTGGAAGCCCGCAGTATCTAAAGACAAGATTTGGAAAT
CGTCTAGAACTAGAGGTAAAACCCACTGAAGTGAGTTCTGTGGACTTGCA
AGCACTCTGCCAAGCTATTCAGGAAATGCTTTTTGATGTCCCTTCTCAAC
CTAGAAGCTTAATTAATGACCTTGAAATTTGCATTGGGGGTGCTGATTCC
GCCTCCTCAGGAAATACCTCCATTGCAGAGATTAGCTTGACACCAGATAT
GATAGGCTTAATTGGACGATGGCTTGGCAACGAAGAAAGAGTGAAGACTC
TAATGTGCAGTACCTCGGCCGCGACCACGC
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