GH720931
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GH720931 vs. TrEMBL
Match: B9H9T2_POPTR (ABC transporter family, cholesterol/phospholipid flippase OS=Populus trichocarpa GN=PtrAOH1 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 3.127e-42 Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 2 Query: 26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLMCST 364 RIGIMVGG+LRCIGSPQ+LKTRFGN LELEVKPTEVSSVDL+ LCQ IQ LFD+PS PRSL++D+E+CIG DS +S N S+ EISL+ +MI LIGRWLGNEERVKTL+ ST Sbjct: 1670 RIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLENLCQTIQSRLFDIPSHPRSLLDDIEVCIGRIDSITSENASVMEISLSQEMIILIGRWLGNEERVKTLVSST 1782
BLAST of GH720931 vs. TrEMBL
Match: D7THU8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033258001 PE=4 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 5.520e-39 Identity = 80/113 (70.80%), Postives = 96/113 (84.96%), Query Frame = 2 Query: 26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLMCST 364 RIGIMVGG+LRCIGS Q+LKTRFGN LELEVKPTEVS VDL+ LC+ IQE LF +P PRS+++DLE+CIG DS +S N S+AEISL+P+MI +IGRWLGNEER+ TL+ ST Sbjct: 1782 RIGIMVGGRLRCIGSSQHLKTRFGNHLELEVKPTEVSHVDLENLCRFIQERLFHIP-HPRSILSDLEVCIGAVDSITSENASVAEISLSPEMIVMIGRWLGNEERISTLVSST 1893
BLAST of GH720931 vs. TrEMBL
Match: B9SU42_RICCO (Abc transporter, putative OS=Ricinus communis GN=RCOM_1216160 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.041e-37 Identity = 79/116 (68.10%), Postives = 93/116 (80.17%), Query Frame = 2 Query: 26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLMCSTSAA 373 RIGIMVGG+LRCIGSPQ+LKTRFGN LELEVKP EVS V+L+ LCQ IQ L ++PS PRSL+NDLEICIG D +S N S AEI L+ +MI +IG+WLGNEERV TL S+S + Sbjct: 1527 RIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPAEVSPVELENLCQIIQGRLLNIPSYPRSLLNDLEICIGAVDFITSENASAAEIRLSKEMILMIGQWLGNEERVNTLFSSSSTS 1642
BLAST of GH720931 vs. TrEMBL
Match: D7LHA5_ARALY (ATPase, coupled to transmembrane movement of substances OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483249 PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.077e-34 Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = 2 Query: 26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLM 355 RIGIMVGG+LRCIGSPQ+LKTR+GN LELEVKP EVSS +L+ CQ IQ+ LF+VP+QPRSL+ DLE+CIG +DS + S +EISL+P+M+ I ++LGNE+RV TL+ Sbjct: 1692 RIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSSEELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQSIAKFLGNEQRVSTLV 1801
BLAST of GH720931 vs. TrEMBL
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily OS=Ectocarpus siliculosus GN=Esi_0359_0018 PE=4 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 7.277e-7 Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 2 Query: 26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSL 211 RIGIMVGG++RC+GS Q+LKTRFG +LE + VS D+ A+ I S P L Sbjct: 1772 RIGIMVGGRMRCLGSSQHLKTRFGKGFQLEARVGAVSPTDIDAMLATIAPATGGQASLPSEL 1833
BLAST of GH720931 vs. SwissProt
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 2.368e-36 Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 2 Query: 26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLM 355 RIGIMVGG+LRCIGSPQ+LKTR+GN LELEVKP EVS+V+L+ CQ IQ+ LF+VP+QPRSL+ DLE+CIG +DS + S +EISL+P+M+ I ++LGNE+RV TL+ Sbjct: 1660 RIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLV 1769
BLAST of GH720931 vs. TAIR peptide
Match: AT2G41700.1 (| Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17396110 REVERSE LENGTH=1882) HSP 1 Score: 150.599 bits (379), Expect = 2.221e-37 Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 2 Query: 26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEVKPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLM 355 RIGIMVGG+LRCIGSPQ+LKTR+GN LELEVKP EVS+V+L+ CQ IQ+ LF+VP+QPRSL+ DLE+CIG +DS + S +EISL+P+M+ I ++LGNE+RV TL+ Sbjct: 1660 RIGIMVGGRLRCIGSPQHLKTRYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLV 1769
BLAST of GH720931 vs. TAIR peptide
Match: AT2G41700.2 (| Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17395932 REVERSE LENGTH=1846) HSP 1 Score: 144.05 bits (362), Expect = 2.078e-35 Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = 2 Query: 26 RIGIMVGGQLRCIGSPQYLKTRFGNRLELEV------KPTEVSSVDLQALCQAIQEMLFDVPSQPRSLINDLEICIGGADSASSGNTSIAEISLTPDMIGLIGRWLGNEERVKTLM 355 RIGIMVGG+LRCIGSPQ+LKTR+GN LELEV KP EVS+V+L+ CQ IQ+ LF+VP+QPRSL+ DLE+CIG +DS + S +EISL+P+M+ I ++LGNE+RV TL+ Sbjct: 1618 RIGIMVGGRLRCIGSPQHLKTRYGNHLELEVPFYNGVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLGNEQRVSTLV 1733 The following BLAST results are available for this feature:
BLAST of GH720931 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 5
BLAST of GH720931 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 1
BLAST of GH720931 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GH720931 ID=GH720931; Name=GH720931; organism=Pisum sativum; type=EST; length=380bpback to top |