EX569584

EST Overview
NameEX569584
Unique NameEX569584
TypeEST
OrganismPisum sativum (pea)
Sequence length531
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of EX569584 vs. TrEMBL
Match: B9I2P0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_834282 PE=4 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.825e-41
Identity = 81/113 (71.68%), Postives = 100/113 (88.50%), Query Frame = 1
Query:   25 VLSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            + S+GTGGIRNNRRPL +E+PREYANRCAVQWHRV+VYPERLG ++M+NVL GS LY+EGNLETKVF+DPITGLVRRIRE+AVR++GR+VFL  G  ++QQA   +L+ +GYY
Sbjct:  109 IFSMGTGGIRNNRRPLQNEDPREYANRCAVQWHRVSVYPERLGRVVMQNVLPGSILYVEGNLETKVFTDPITGLVRRIREIAVRQNGRLVFLGKG-ANDQQASSLELKGLGYY 220          
BLAST of EX569584 vs. TrEMBL
Match: B9RE51_RICCO (Single-stranded DNA-binding protein, mitochondrial, putative OS=Ricinus communis GN=RCOM_1618400 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.113e-41
Identity = 79/116 (68.10%), Postives = 101/116 (87.07%), Query Frame = 1
Query:   16 SRAVLSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            S  + S+GTGGIRNNRRP+ +E PREYANRCAVQWHRV+VYPERLG+++MK++L GS +Y+EGNLETKVF+DPITGLVRRIREVA+R+ GR+VFL+ G D E++A   +L+ +GYY
Sbjct:  109 SVTMFSLGTGGIRNNRRPMQNEEPREYANRCAVQWHRVSVYPERLGSIVMKHLLPGSIMYLEGNLETKVFTDPITGLVRRIREVAIRQDGRIVFLAKGGD-EKEASSKELKGLGYY 223          
BLAST of EX569584 vs. TrEMBL
Match: D7U3W8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_33.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022737001 PE=4 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.056e-41
Identity = 79/113 (69.91%), Postives = 97/113 (85.84%), Query Frame = 1
Query:   25 VLSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            + S+GTGGIRNNRRPLD+E+P+EYANR AVQWHRVTVYPE LGN++MK+V  GS LY+EGNLETK+F+DP+TGLVRRIREVA+RR+GR+VFL  G D + QA   +L+  GYY
Sbjct:  110 LFSVGTGGIRNNRRPLDNEDPKEYANRSAVQWHRVTVYPENLGNIVMKHVSPGSVLYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRLVFLGKGGDGD-QASNVELKGAGYY 221          
BLAST of EX569584 vs. TrEMBL
Match: Q9LII1_ARATH (Similarity to unknown protein OS=Arabidopsis thaliana GN=At3g18580 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.466e-38
Identity = 77/113 (68.14%), Postives = 95/113 (84.07%), Query Frame = 1
Query:   25 VLSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            + S+GTGGIRNNRRPL +E+PREYA+R AVQWHRV+VYPERL +L++KNV  G+ +Y+EGNLETK+F+DP+TGLVRRIREVA+RR+GRVVFL    D  QQ    +LR VGYY
Sbjct:  106 LFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDM-QQPSSAELRGVGYY 217          
BLAST of EX569584 vs. TrEMBL
Match: D7L8J7_ARALY (Single-strand-binding family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_479363 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.221e-38
Identity = 77/113 (68.14%), Postives = 94/113 (83.19%), Query Frame = 1
Query:   25 VLSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            + S+GTGGIRNNRRPL +E+PREYA+R AVQWHRV+VYPERL  L++KNV  G+ +Y+EGNLETK+F+DP+TGLVRRIREVA+RR+GRVVFL    D  QQ    +LR VGYY
Sbjct:  112 LFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLAELVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDM-QQPSSAELRGVGYY 223          
BLAST of EX569584 vs. TrEMBL
Match: C5XF43_SORBI (Putative uncharacterized protein Sb03g029310 OS=Sorghum bicolor GN=Sb03g029310 PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.937e-36
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   10 RNSRAVL--SIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            RN R V+  S+GTGGIRNNRRPLD E P +YA+RC+VQWHRV VYPERLG L +KNV  G+ LY+EGNLETKVF DPITGLVRRIRE+AVR  GR++FL  G+D+    +  +++ VGY+
Sbjct:  105 RNGRTVVLFSLGTGGIRNNRRPLDREEPHQYADRCSVQWHRVCVYPERLGTLALKNVKTGTVLYLEGNLETKVFCDPITGLVRRIREIAVRSTGRLLFL--GNDT-NAPKLGEVKGVGYF 221          
BLAST of EX569584 vs. TrEMBL
Match: Q5VP75_ORYSJ (Os01g0642900 protein OS=Oryza sativa subsp. japonica GN=P0510C12.21 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.146e-35
Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   10 RNSRAVL--SIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            R+ R V+  S+GTGGIRNNRRPLD E P +YA RC+VQWHRV +YPERLG+L +K+V  GS LY+EGNLETKVFSDPITGLVRRIRE+AVR +GR++FL  G+D     +  + + VGY+
Sbjct:  108 RSGRTVVLFSLGTGGIRNNRRPLDREEPHQYAERCSVQWHRVCIYPERLGSLALKHVKTGSVLYLEGNLETKVFSDPITGLVRRIREIAVRSNGRLLFL--GNDC-NAPKLGEAKGVGYF 224          
BLAST of EX569584 vs. TrEMBL
Match: A2WT49_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03039 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.146e-35
Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   10 RNSRAVL--SIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            R+ R V+  S+GTGGIRNNRRPLD E P +YA RC+VQWHRV +YPERLG+L +K+V  GS LY+EGNLETKVFSDPITGLVRRIRE+AVR +GR++FL  G+D     +  + + VGY+
Sbjct:  108 RSGRTVVLFSLGTGGIRNNRRPLDREEPHQYAERCSVQWHRVCIYPERLGSLALKHVKTGSVLYLEGNLETKVFSDPITGLVRRIREIAVRSNGRLLFL--GNDC-NAPKLGEAKGVGYF 224          
BLAST of EX569584 vs. TrEMBL
Match: A9NW20_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.685e-34
Identity = 64/113 (56.64%), Postives = 95/113 (84.07%), Query Frame = 1
Query:   25 VLSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            + S+GTGG+ NNRRPL+ E+PREYA+R  VQWHRV++Y + LG + M+++  G+ +Y+EGNLETK+FSDPITGLV+R+RE+A+RR GR++FL+ G++S  ++QQ+ L+ VGY+
Sbjct:  112 MFSVGTGGMHNNRRPLEDESPREYADRSMVQWHRVSIYADNLGGIAMQHLKQGAHVYLEGNLETKIFSDPITGLVKRVREIAIRRQGRLIFLNDGNESTDKSQQS-LKGVGYF 223          
BLAST of EX569584 vs. TrEMBL
Match: B6U5B2_MAIZE (Single-stranded DNA-binding protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.813e-34
Identity = 70/113 (61.95%), Postives = 90/113 (79.65%), Query Frame = 1
Query:   25 VLSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            + S+GTGGIRNNRRPLD E P +YA+RC+VQWHRV VYP+RLG + + NV  G+ LY+EGNLETKVF DPITGLVRRIRE+AVR  GR++FL  G+D+    +  +++ VGY+
Sbjct:  115 LFSLGTGGIRNNRRPLDREEPHQYADRCSVQWHRVCVYPDRLGTVALNNVKTGTILYLEGNLETKVFCDPITGLVRRIREIAVRSSGRLLFL--GNDA-NAPKLGEVKGVGYF 224          
BLAST of EX569584 vs. SwissProt
Match: SSBP_ARATH (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.774e-11
Identity = 35/103 (33.98%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   10 RNSRAV--LSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGD 312
            RN R V   ++GTGG+ + R       P+        QWHR+ V+ E LG+  ++ +   S++Y+EG++ET+V++D I+  V+ I E+ VRR G++  +  G+
Sbjct:   90 RNGRTVTIFTVGTGGMFDQRLVGATNQPKP------AQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYGE 186          
BLAST of EX569584 vs. TAIR peptide
Match: AT3G18580.1 (| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:6396940-6398068 REVERSE LENGTH=217)

HSP 1 Score: 161.77 bits (408), Expect = 2.065e-40
Identity = 77/113 (68.14%), Postives = 95/113 (84.07%), Query Frame = 1
Query:   25 VLSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGDDSEQQAQQNDLRAVGYY 363
            + S+GTGGIRNNRRPL +E+PREYA+R AVQWHRV+VYPERL +L++KNV  G+ +Y+EGNLETK+F+DP+TGLVRRIREVA+RR+GRVVFL    D  QQ    +LR VGYY
Sbjct:  106 LFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRIREVAIRRNGRVVFLGKAGDM-QQPSSAELRGVGYY 217          
BLAST of EX569584 vs. TAIR peptide
Match: AT4G11060.1 (| Symbols: MTSSB | mitochondrially targeted single-stranded DNA binding protein | chr4:6754820-6756230 REVERSE LENGTH=201)

HSP 1 Score: 67.781 bits (164), Expect = 4.058e-12
Identity = 35/103 (33.98%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   10 RNSRAV--LSIGTGGIRNNRRPLDHENPREYANRCAVQWHRVTVYPERLGNLLMKNVLLGSTLYIEGNLETKVFSDPITGLVRRIREVAVRRHGRVVFLSPGD 312
            RN R V   ++GTGG+ + R       P+        QWHR+ V+ E LG+  ++ +   S++Y+EG++ET+V++D I+  V+ I E+ VRR G++  +  G+
Sbjct:   90 RNGRTVTIFTVGTGGMFDQRLVGATNQPKP------AQWHRIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYGE 186          
The following BLAST results are available for this feature:
BLAST of EX569584 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9I2P0_POPTR1.825e-4171.68Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RE51_RICCO3.113e-4168.10Single-stranded DNA-binding protein, mitochondrial... [more]
D7U3W8_VITVI9.056e-4169.91Whole genome shotgun sequence of line PN40024, sca... [more]
Q9LII1_ARATH2.466e-3868.14Similarity to unknown protein OS=Arabidopsis thali... [more]
D7L8J7_ARALY3.221e-3868.14Single-strand-binding family protein OS=Arabidopsi... [more]
C5XF43_SORBI3.937e-3664.17Putative uncharacterized protein Sb03g029310 OS=So... [more]
Q5VP75_ORYSJ1.146e-3563.33Os01g0642900 protein OS=Oryza sativa subsp. japoni... [more]
A2WT49_ORYSI1.146e-3563.33Putative uncharacterized protein OS=Oryza sativa s... [more]
A9NW20_PICSI3.685e-3456.64Putative uncharacterized protein OS=Picea sitchens... [more]
B6U5B2_MAIZE4.813e-3461.95Single-stranded DNA-binding protein OS=Zea mays PE... [more]
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BLAST of EX569584 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
SSBP_ARATH3.774e-1133.98Single-stranded DNA-binding protein, mitochondrial... [more]
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BLAST of EX569584 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G18580.12.065e-4068.14| Symbols: | Nucleic acid-binding, OB-fold-like p... [more]
AT4G11060.14.058e-1233.98| Symbols: MTSSB | mitochondrially targeted single... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000424Primosome PriB/single-strand DNA-bindingPFAMPF00436SSBcoord: 25..93
score: 1.8
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140no descriptioncoord: 11..104
score: 2.4
IPR016027Nucleic acid-binding, OB-fold-likeSUPERFAMILY50249Nucleic acid-binding proteinscoord: 38..97
score: 1.2

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX569584 ID=EX569584; Name=EX569584; organism=Pisum sativum; type=EST; length=531bp
AATTGCAGAAGAAACTCAAGAGCGGTACTGTCAATCGGAACCGGTGGTAT
TCGCAACAATCGAAGACCACTGGATCATGAAAACCCCAGGGAGTATGCTA
ATCGTTGCGCGGTTCAGTGGCATAGGGTTACAGTTTATCCTGAGAGATTG
GGGAATCTTCTCATGAAAAACGTTCTTCTTGGTTCAACTTTGTATATTGA
GGGAAACCTTGAGACTAAGGTTTTCTCTGATCCCATTACCGGACTTGTTC
GCCGAATTAGAGAAGTTGCTGTTCGTCGACATGGTCGTGTTGTGTTTTTA
AGTCCGGGTGATGATTCCGAGCAACAGGCACAACAAAATGACCTGAGAGC
TGTTGGCTATTATTAAAGTGTATGCTTCAACTGGGAACGGGAACGGGAAC
GTGGGATTCAGTTGGCAGGGGAGAATTTTTTATTTTGTAACTATATTCTG
TATTTTTAATCTCAAATTTGGAACTGTTAGTGACATTTGCCATATTGCAA
ACTCTTGATCTGAGTGATCTTGCTCTTGCTC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000424Primosome_PriB/ssb
IPR012340NA-bd_OB-fold
IPR016027Nucleic acid-binding, OB-fold-like