GH720684

EST Overview
NameGH720684
Unique NameGH720684
TypeEST
OrganismPisum sativum (pea)
Sequence length377
Libraries
Library NameType
LIBEST_024272 BACIcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
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BLAST of GH720684 vs. TrEMBL
Match: B9RC94_RICCO (RNA-binding protein nob1, putative OS=Ricinus communis GN=RCOM_1686350 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.596e-9
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 2 
Query:  212 QQVLEDARNRHGISVLIVDANAVIAGGDKLHGIADKFVSVPEVLEEIRD 358
            Q  +E  ++  GIS+ ++DANAVI GG+KLH +ADKFV+VPEVL EIRD
Sbjct:   39 QIFVESCKSSKGISMAVIDANAVIEGGEKLHNLADKFVTVPEVLAEIRD 87
[Close]
BLAST of GH720684 vs. TrEMBL
Match: B9GWG3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830830 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.390e-9
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:  206 ETQQVLEDARNRHGISVLIVDANAVIAGGDKLHGIADKFVSVPEVLEEIRD 358
            + Q  +E  ++ HGISV ++DANA+I GG+KL+  ADKF +VPEVL EIRD
Sbjct:   35 QDQLYVESCKSTHGISVAVIDANAIIQGGEKLNNFADKFFTVPEVLAEIRD 85
[Close]
BLAST of GH720684 vs. TAIR peptide
Match: AT5G41190.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16487628-16490012 REVERSE LENGTH=602)

HSP 1 Score: 53.9138 bits (128), Expect = 2.754e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2 
Query:  227 DARNRHGISVLIVDANAVIAGGDKLHGIADKFVSVPEVLEEIRDTSA 367
            + ++  GIS+ +VDANA+I G   L   ADKFV+VPEVL EIRD ++
Sbjct:   37 NCKSTKGISIAVVDANAIIEGRQSLTNFADKFVTVPEVLSEIRDPAS 83
The following BLAST results are available for this feature:
BLAST of GH720684 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
B9RC94_RICCO2.596e-961.22RNA-binding protein nob1, putative OS=Ricinus comm... [more]
B9GWG3_POPTR3.390e-956.86Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GH720684 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G41190.12.754e-853.19| Symbols: | CONTAINS InterPro DOMAIN/s: Nin one ... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..20
score: NAcoord: 27..34
score
NoneNo IPR availableSEGsegsegcoord: 15..37
score: NAcoord: 44..54
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GH720684 ID=GH720684; Name=GH720684; organism=Pisum sativum; type=EST; length=377bp
TTCGAGCGGCCGCCCGGGCAGGTCCCACCTAGAACCCTAAACCTAACCAA
AACGGCGGCAGTGCTTCTCGCACCTCCGATCGAATCGTCGCCGGTAAATC
ATGGAGGAAGCTTCAGCAACAGCACCGCCACCACCAAAACCATCGTGTTG
GAGTAGCATAGTGAAGAAGGAGGCACCGCCACCTCAACAACCACCGCCAC
TTTTAGAGACTCAACAAGTTTTAGAAGATGCGCGTAACCGTCATGGGATA
TCTGTTTTGATTGTTGACGCTAATGCTGTTATTGCAGGCGGAGATAAGCT
TCATGGAATTGCTGATAAGTTTGTGTCTGTCCCGGAAGTCTTGGAGGAAA
TCCGTGATACCTCGGCCGCGACCACGC
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