EX570235

EST Overview
NameEX570235
Unique NameEX570235
TypeEST
OrganismPisum sativum (pea)
Sequence length330
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of EX570235 vs. TrEMBL
Match: A6BLP0_IPONI (70 kDa subunit of replication protein A OS=Ipomoea nil GN=RPA70 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.060e-10
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = -3
Query:    2 MAKSVTPNAISTLQANPCPDSSSDLPDIVLQVLDLKHSGNRYMF 133
            M +SVTP+AIS + ANP PDS SDLP++++QV+DLK +GNRYMF
Sbjct:    1 MERSVTPDAISAILANPSPDSGSDLPELIVQVVDLKQAGNRYMF 44          
BLAST of EX570235 vs. TrEMBL
Match: D7SHZ9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00007849001 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.576e-9
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = -3
Query:    2 MAKSVTPNAISTLQANPCPDSSSDLPDIVLQVLDLKHSGNRYMF 133
            MAKS+TPN IST+ +NP PDSS++LP+I++QV+DL   GNRY F
Sbjct:    1 MAKSITPNGISTILSNPSPDSSTELPEIIVQVIDLTPIGNRYKF 44          
BLAST of EX570235 vs. TrEMBL
Match: A5AJR8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006284 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.576e-9
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = -3
Query:    2 MAKSVTPNAISTLQANPCPDSSSDLPDIVLQVLDLKHSGNRYMF 133
            MAKS+TPN IST+ +NP PDSS++LP+I++QV+DL   GNRY F
Sbjct:    1 MAKSITPNGISTILSNPSPDSSTELPEIIVQVIDLTPIGNRYKF 44          
BLAST of EX570235 vs. TrEMBL
Match: D7MUG5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496254 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 9.542e-7
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = -3
Query:    2 MAKSVTPNAISTLQANPCPDSSSDLPDIVLQVLDLKHSGNRYMF 133
            M  SVTP+AIST+ +NP  DSSS+ P+IV+QV+DLK  GNRY F
Sbjct:    1 MQTSVTPDAISTVLSNPSFDSSSERPEIVVQVVDLKPIGNRYTF 44          
BLAST of EX570235 vs. TAIR peptide
Match: AT5G61000.1 (| Symbols: RPA70D, ATRPA70D | Replication factor-A protein 1-related | chr5:24549682-24552641 REVERSE LENGTH=629)

HSP 1 Score: 55.0694 bits (131), Expect = 1.068e-8
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -3
Query:    2 MAKSVTPNAISTLQANPCPDSSSDLPDIVLQVLDLKHSGNRYMF 133
            M  SVTP+AIST+ +NP  DSSSD  +IV+QV+DLK  GNRY F
Sbjct:    1 MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGNRYTF 44          
BLAST of EX570235 vs. TAIR peptide
Match: AT5G08020.1 (| Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=604)

HSP 1 Score: 48.9062 bits (115), Expect = 7.655e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = -3
Query:    2 MAKSVTPNAISTLQANPCPDSSSDLPDIVLQVLDLKHSGNRYMF 133
            M  SVT + I+T+ AN   DSSS  P+IV+QV+DLK +GNRY F
Sbjct:    1 MENSVTQDGIATVLANQSLDSSSVRPEIVVQVVDLKPAGNRYTF 44          
The following BLAST results are available for this feature:
BLAST of EX570235 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 4
Match NameE-valueIdentityDescription
A6BLP0_IPONI7.060e-1065.9170 kDa subunit of replication protein A OS=Ipomoea... [more]
D7SHZ9_VITVI4.576e-963.64Whole genome shotgun sequence of line PN40024, sca... [more]
A5AJR8_VITVI4.576e-963.64Putative uncharacterized protein OS=Vitis vinifera... [more]
D7MUG5_ARALY9.542e-763.64Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of EX570235 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G61000.11.068e-863.64| Symbols: RPA70D, ATRPA70D | Replication factor-A... [more]
AT5G08020.17.655e-756.82| Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B ... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 2..13
score
NoneNo IPR availableSEGsegsegcoord: 3..14
score: NAcoord: 22..32
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX570235 ID=EX570235; Name=EX570235; organism=Pisum sativum; type=EST; length=330bp
AGAACATGTATCTGTTTCCACTGTGTTTGAGATCGAGAACTTGAAGAACG
ATATCAGGCAGATCTGATGAAGAATCCGGACACGGATTTGCCTGCAAAGT
AGAAATGGCGTTTGGGGTGACAGATTTCGCCATTGGATTGAGGATGAAGA
ATTAGGGTTTGATGCAGAATATGAAAATTAGGGTTAGAGAGTGAAGATCG
TTAAAACTCCGGTGAAGAAGGCTAAGAAGTGAGGGATTAGGGTTTGATTT
GATTTGATTGGGTTTTTTAGTTATGTGTGTAATGTTATGGTTTATTATTA
TGGTTTGGTTTTAGAAAGATTAGAGATGAA
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