EX570419

EST Overview
NameEX570419
Unique NameEX570419
TypeEST
OrganismPisum sativum (pea)
Sequence length466
Libraries
Library NameType
LIBEST_021973 Pisum sativum shoot apical meristem ESTscdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of EX570419 vs. TrEMBL
Match: Q8H1A3_PEA (Mini-chromosome maintenance protein MCM6 OS=Pisum sativum GN=mcm6 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.851e-19
Identity = 52/67 (77.61%), Postives = 52/67 (77.61%), Query Frame = 3
Query:    3 NYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQXXXXXXXXXXXXXXXRNDRILAVAPHYVVD 203
            NYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQ               RNDRILAVAPHYVVD
Sbjct:  761 NYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQAAAEAAGAEQTESAARNDRILAVAPHYVVD 827          
BLAST of EX570419 vs. TrEMBL
Match: Q45NK0_MEDSA (Mini-chromosome maintenance protein (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.556e-16
Identity = 45/67 (67.16%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    3 NYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQXXXXXXXXXXXXXXXRNDRILAVAPHYVVD 203
            NYSS+EEAK E+SQIKAIIEILIRREGHLIV+DDGRQ               RNDR LAVAP+YV D
Sbjct:  133 NYSSVEEAKVEISQIKAIIEILIRREGHLIVIDDGRQAASEAAGAEQSESAARNDRTLAVAPNYVGD 199          
BLAST of EX570419 vs. TrEMBL
Match: D7TFY9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_184.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00003253001 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.015e-14
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    3 NYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQXXXXXXXXXXXXXXXRNDRILAVAPHYVVD 203
            NYSS+EEA  EVS++KAIIE LIRREGHLIVVDDGRQ               RNDRILAVAP+YV+D
Sbjct:  757 NYSSMEEAANEVSKLKAIIESLIRREGHLIVVDDGRQ-AAAEGEDGRPPSVSRNDRILAVAPNYVID 822          
BLAST of EX570419 vs. TrEMBL
Match: A5BY30_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029723 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.015e-14
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    3 NYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQXXXXXXXXXXXXXXXRNDRILAVAPHYVVD 203
            NYSS+EEA  EVS++KAIIE LIRREGHLIVVDDGRQ               RNDRILAVAP+YV+D
Sbjct:  742 NYSSMEEAANEVSKLKAIIESLIRREGHLIVVDDGRQ-AAAEGEDGRPPSVSRNDRILAVAPNYVID 807          
BLAST of EX570419 vs. TrEMBL
Match: B9T7E5_RICCO (Minichromosome maintenance protein, putative OS=Ricinus communis GN=RCOM_0133060 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.851e-11
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 3
Query:    3 NYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQXXXXXXXXXXXXXXXRNDRILAVAPHYVVD 203
            +YSS+EEAK E +++KAIIE LIRREG+LIVVDDGRQ               R++RILAVAP+YVV+
Sbjct:  649 SYSSVEEAKNEATKVKAIIESLIRREGYLIVVDDGRQ--PDAEGEGARQSVSRDNRILAVAPNYVVE 713          
BLAST of EX570419 vs. TrEMBL
Match: B9GMZ6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_797236 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.021e-10
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 NYSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQXXXXXXXXXXXXXXXRNDRILAVAPHYVVD 203
            +YSS+EEAK E S+IKAIIE LIRREG LIVVDDG +               R+DRIL VAP+Y+V+
Sbjct:  778 SYSSLEEAKNEASKIKAIIESLIRREGFLIVVDDGSR--PEAEGDGARQSSSRDDRILVVAPNYLVE 842          
BLAST of EX570419 vs. TAIR peptide
Match: AT5G44635.1 (| Symbols: MCM6 | minichromosome maintenance (MCM2/3/5) family protein | chr5:18006431-18010542 REVERSE LENGTH=831)

HSP 1 Score: 50.8322 bits (120), Expect = 3.858e-7
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 3
Query:    6 YSSIEEAKTEVSQIKAIIEILIRREGHLIVVDDGRQXXXXXXXXXXXXXXXRNDRILAVAPHYVVD 203
            YSS E+ K ++ +++AIIE L+ +EGHLIV+ +  Q               R++RILAVAP+YV++
Sbjct:  767 YSSQEQVKLDIKKLRAIIESLVCKEGHLIVLAN-EQEEAAEAEETKKKSSQRDERILAVAPNYVIE 831          
The following BLAST results are available for this feature:
BLAST of EX570419 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
Q8H1A3_PEA4.851e-1977.61Mini-chromosome maintenance protein MCM6 OS=Pisum ... [more]
Q45NK0_MEDSA6.556e-1667.16Mini-chromosome maintenance protein (Fragment) OS=... [more]
D7TFY9_VITVI8.015e-1465.67Whole genome shotgun sequence of line PN40024, sca... [more]
A5BY30_VITVI8.015e-1465.67Putative uncharacterized protein OS=Vitis vinifera... [more]
B9T7E5_RICCO2.851e-1158.21Minichromosome maintenance protein, putative OS=Ri... [more]
B9GMZ6_POPTR7.021e-1056.72Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of EX570419 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G44635.13.858e-740.91| Symbols: MCM6 | minichromosome maintenance (MCM2... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 38..52
score
NoneNo IPR availableSEGsegsegcoord: 10..30
score
NoneNo IPR availableSEGsegsegcoord: 30..43
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>EX570419 ID=EX570419; Name=EX570419; organism=Pisum sativum; type=EST; length=466bp
ATAACTACAGTTCCATAGAGGAGGCGAAAACTGAAGTTTCCCAAATTAAA
GCAATTATAGAGATTTTAATTCGAAGAGAGGGGCATTTGATAGTAGTAGA
TGATGGGAGACAAGCAGCAGCAGAGGCTGCTGGTGCAGAACAAACCGAGT
CTGCGGCTAGAAATGATAGAATTTTGGCTGTAGCTCCTCATTATGTTGTT
GACTGACCGCCTAGTATTGAAGAAAGAAACTGGAAGTTACTTAATTTTGC
AGTAGTATTGAAGAAAGAAACTGGAAGTTACTTTCATCTGCATCTAACAT
GTATCACCAAAGGGCCAACCAGCATGGTGTAATTCATCCATTACTTTGTT
GTTCTCACCATTTCTATTCACTACTGAAATGTTTGACGGTGTGTCCGTTA
TATTAGACAGTAGATGATATGTGTAATATTATTGACTAAAATTACAGGCG
GGAGGACTCATTCAAG
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