AM161708

EST Overview


Name	AM161708
Unique Name	AM161708
Type	EST
Organism	Pisum sativum (pea)
Sequence length	341

Libraries


Library Name	Type
LIBEST_019360 Pisum sativum leaf vegetative	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
KEGG analysis for Pisum sativum unigene v1	2011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of AM161708 vs. TrEMBL
Match: Q9XQB6_PHAAU (Chlorophyll a/b-binding protein CP24 OS=Phaseolus aureus GN=CipCp24 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.281e-34
Identity = 79/99 (79.80%), Postives = 81/99 (81.82%), Query Frame = -2

Query:    2 MAAATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            MAAATSGAV           G RSQTLLAT+IG KVGVA VSP+RLIV AAA APKKSWIPGV  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW
Sbjct:    1 MAAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVA-VSPRRLIVVAAA-APKKSWIPGVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 97

[Close]

BLAST of AM161708 vs. TrEMBL
Match: C6T0J3_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.177e-33
Identity = 78/101 (77.23%), Postives = 81/101 (80.20%), Query Frame = -2

Query:    2 MAAATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAV--SPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            MAAATSGAV           G RSQTLLATAIG KVG AAV  SP+RLIV AAA APKKSW+PGV  GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKW
Sbjct:    1 MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAAVTVSPRRLIVVAAA-APKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 100

[Close]

BLAST of AM161708 vs. TrEMBL
Match: C6T4E5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.839e-33
Identity = 76/100 (76.00%), Postives = 80/100 (80.00%), Query Frame = -2

Query:    2 MAAATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAA-VSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            MAAATSGAV           G RSQTLLATAIG KVG A  V+P+RLIV AAA APKKSW+PGV  GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKW
Sbjct:    1 MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAVTVNPRRLIVVAAA-APKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 99

[Close]

BLAST of AM161708 vs. TrEMBL
Match: C6TLI1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.031e-29
Identity = 70/99 (70.71%), Postives = 76/99 (76.77%), Query Frame = -2

Query:    2 MAAATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            MAAATS AV           GKRS  LLA +IG KVG A+VSPKR+IVA AA APKKSWIP V  GG+ +DPEWLDGSLPGD+GFDPLGLGKDPAFLKW
Sbjct:    1 MAAATSSAVLNGFGSHFLCGGKRSHALLAASIGGKVG-ASVSPKRVIVAVAA-APKKSWIPAVKGGGSFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 97

[Close]

BLAST of AM161708 vs. TrEMBL
Match: D7STF1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_55.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00029789001 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.917e-29
Identity = 65/97 (67.01%), Postives = 73/97 (75.26%), Query Frame = -2

Query:    2 AATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 292
            AATS AV           GKRSQ+LL+  + +K G A  +P+RLIV AAA  PKKSW+PGV  GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKW
Sbjct:    2 AATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAA--PKKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 96

[Close]

BLAST of AM161708 vs. TrEMBL
Match: A5ASW8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015544 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.917e-29
Identity = 65/97 (67.01%), Postives = 73/97 (75.26%), Query Frame = -2

Query:    2 AATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 292
            AATS AV           GKRSQ+LL+  + +K G A  +P+RLIV AAA  PKKSW+PGV  GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKW
Sbjct:    2 AATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAA--PKKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 96

[Close]

BLAST of AM161708 vs. TrEMBL
Match: Q9XF90_ARATH (Lhcb6 protein OS=Arabidopsis thaliana GN=Lhcb6 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.253e-27
Identity = 64/99 (64.65%), Postives = 69/99 (69.70%), Query Frame = -2

Query:    2 MAAATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            MA A SGAV           GKR  T LA+ +G+  G   V  K LIVAAAA+ PKKSWIP V  GGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKW
Sbjct:    1 MAMAVSGAVLSGIGSSFLTGGKRGATALASGVGT--GAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 97

[Close]

BLAST of AM161708 vs. TrEMBL
Match: Q9LMQ2_ARATH (Chlorophyll A-B binding protein OS=Arabidopsis thaliana GN=At1g15820/F7H2.16 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.253e-27
Identity = 64/99 (64.65%), Postives = 69/99 (69.70%), Query Frame = -2

Query:    2 MAAATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            MA A SGAV           GKR  T LA+ +G+  G   V  K LIVAAAA+ PKKSWIP V  GGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKW
Sbjct:    1 MAMAVSGAVLSGLGSSFLTGGKRGATALASGVGT--GAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 97

[Close]

BLAST of AM161708 vs. TrEMBL
Match: Q0PWS6_TOBAC (Chloroplast pigment-binding protein CP24 OS=Nicotiana tabacum GN=Lhcb6 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.293e-26
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = -2

Query:    2 AATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 292
            A TS AV           GK SQ LL   + +++G  A +PKR IVAAAA APKKSWIP V  GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKW
Sbjct:    2 ATTSAAVLNGLSSSFLTGGKNSQALLGAPVAARIGGLA-TPKRCIVAAAA-APKKSWIPAVKGGGNLLDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 96

[Close]

BLAST of AM161708 vs. TrEMBL
Match: D1MWY9_CITLA (Light-harvesting complex II protein OS=Citrullus lanatus subsp. vulgaris GN=CitLhc PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.179e-25
Identity = 62/97 (63.92%), Postives = 70/97 (72.16%), Query Frame = -2

Query:    2 AATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 292
            AATSG V           G R+QTLLA   G++ GV  V  ++L+V AAA  PKKSWIP V  GGNL+DPEWLDGSLPGD+GFDPLGLGKDPAFLKW
Sbjct:    2 AATSGTVLNGLGSPFLRGGSRTQTLLA---GARGGVNVVGSRKLVVVAAAQ-PKKSWIPAVKGGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 94

[Close]

BLAST of AM161708 vs. SwissProt
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.390e-27
Identity = 61/99 (61.62%), Postives = 68/99 (68.69%), Query Frame = -2

Query:    2 MAAATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            M   ++ AV           GK++Q LL    G+ V     +PKR +VAAAA APKKSWIP V  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALL----GAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 95

[Close]

BLAST of AM161708 vs. SwissProt
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.340e-26
Identity = 62/102 (60.78%), Postives = 71/102 (69.61%), Query Frame = -2

Query:    2 MAAATSGA--VXXXXXXXXXXXGKRSQTLLATAIGSKVGVA-AVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            MAAATS    V            K SQ+LL   + SKVG   + + ++L+V AAA+APKKSWIP V  GGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKW
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLF--VNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 100

[Close]

BLAST of AM161708 vs. SwissProt
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.340e-26
Identity = 62/97 (63.92%), Postives = 69/97 (71.13%), Query Frame = -2

Query:    2 AATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 292
            A TS AV           G +SQ LLA  + ++VG AA +PKR  V AAA+  KKSWIP V  GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKW
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAA-TPKRFTVLAAAA--KKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKW 95

[Close]

BLAST of AM161708 vs. SwissProt
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.210e-12
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = -2

Query:    2 VAAVSPKRLIVAAAASAPKKS-WIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 187
            +A V  + + V+A A+ P +  W PG +       PEWLDGSLPGDFGFDPLGLG DP  LKW
Sbjct:   46 IAPVGSRSVAVSAVAADPDRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPESLKW 102

[Close]

BLAST of AM161708 vs. SwissProt
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.086e-9
Identity = 30/66 (45.45%), Postives = 34/66 (51.52%), Query Frame = -2

Query:    2 SKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 199
            SK      +     V  AA   +  W PG +       P WLDGSLPGDFGFDPLGL  DP  L+W
Sbjct:   43 SKYSTTPTARSATTVCVAADPDRPLWFPGST------PPPWLDGSLPGDFGFDPLGLASDPESLRW 102

[Close]

BLAST of AM161708 vs. SwissProt
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 6.591e-7
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = -2

Query:    2 APKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 139
            A K  W+PG      L  P +L GSLPGD GFDPLGL +DP  L+W
Sbjct:   51 AKKGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRW 90

[Close]

BLAST of AM161708 vs. SwissProt
Match: CA4_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.608e-7
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = -2

Query:    2 APKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 139
            A K  W+PG      L  P++L GSL GD GFDPLGL +DP  LKW
Sbjct:   52 AKKGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKW 91

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT1G15820.1 (| Symbols: LHCB6, CP24 | light harvesting complex photosystem II subunit 6 | chr1:5446685-5447676 REVERSE LENGTH=258)

HSP 1 Score: 123.635 bits (309), Expect = 2.416e-29
Identity = 64/99 (64.65%), Postives = 69/99 (69.70%), Query Frame = -2

Query:    2 MAAATSGAVXXXXXXXXXXXGKRSQTLLATAIGSKVGVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 298
            MA A SGAV           GKR  T LA+ +G+  G   V  K LIVAAAA+ PKKSWIP V  GGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKW
Sbjct:    1 MAMAVSGAVLSGLGSSFLTGGKRGATALASGVGT--GAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 97

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT3G61470.1 (| Symbols: LHCA2 | photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257)

HSP 1 Score: 67.781 bits (164), Expect = 1.573e-12
Identity = 36/66 (54.55%), Postives = 40/66 (60.61%), Query Frame = -2

Query:    2 KVGVAAVS-PKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 196
            K+ V AVS P   + A AA   +  W PG +       PEWLDGSLPGDFGFDPLGL  DP  LKW
Sbjct:   30 KLTVPAVSRPDASVRAVAADPDRPIWFPGST------PPEWLDGSLPGDFGFDPLGLSSDPDSLKW 89

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT1G19150.1 (| Symbols: LHCA6, LHCA2*1 | photosystem I light harvesting complex gene 6 | chr1:6612806-6613799 FORWARD LENGTH=270)

HSP 1 Score: 63.929 bits (154), Expect = 2.272e-11
Identity = 29/41 (70.73%), Postives = 29/41 (70.73%), Query Frame = -2

Query:    2 WIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 124
            W PG S       PEWLDGSLPGDFGFDPLGLG DP  LKW
Sbjct:   68 WFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPDTLKW 102

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT1G45474.2 (| Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179353-17180439 FORWARD LENGTH=256)

HSP 1 Score: 55.0694 bits (131), Expect = 1.055e-8
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = -2

Query:    2 KKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 133
            + +W+PG++       P +LDG+L GD+GFDPLGLG+DP  LKW
Sbjct:   46 RATWLPGLN------PPPYLDGNLAGDYGFDPLGLGEDPESLKW 83

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT1G45474.1 (| Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179353-17180439 FORWARD LENGTH=256)

HSP 1 Score: 55.0694 bits (131), Expect = 1.055e-8
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = -2

Query:    2 KKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 133
            + +W+PG++       P +LDG+L GD+GFDPLGLG+DP  LKW
Sbjct:   46 RATWLPGLN------PPPYLDGNLAGDYGFDPLGLGEDPESLKW 83

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT3G47470.1 (| Symbols: LHCA4, CAB4 | light-harvesting chlorophyll-protein complex I subunit A4 | chr3:17493622-17494773 REVERSE LENGTH=251)

HSP 1 Score: 52.373 bits (124), Expect = 6.840e-8
Identity = 25/46 (54.35%), Postives = 29/46 (63.04%), Query Frame = -2

Query:    2 APKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 139
            A K  W+PG      L  P++L GSL GD GFDPLGL +DP  LKW
Sbjct:   52 AKKGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKW 91

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT5G01530.1 (| Symbols: LHCB4.1 | light harvesting complex photosystem II | chr5:209084-210243 FORWARD LENGTH=290)

HSP 1 Score: 51.6026 bits (122), Expect = 1.167e-7
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = -2

Query:    2 SAPKKS-----------WIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 142
            +APKKS           W PG       + P+WLDGSL GD+GFDP GLGK   +L++
Sbjct:   41 AAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQF 92

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT3G08940.2 (| Symbols: LHCB4.2 | light harvesting complex photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287)

HSP 1 Score: 50.0618 bits (118), Expect = 3.394e-7
Identity = 26/63 (41.27%), Postives = 34/63 (53.97%), Query Frame = -2

Query:    2 GVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 190
            G    SPK+   A    + +  W PG         PE+LDGSL GD+GFDP GLGK   +L++
Sbjct:   36 GTKKASPKK---AKTVISDRPLWFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQF 89

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT3G08940.1 (| Symbols: LHCB4.2 | light harvesting complex photosystem II | chr3:2717717-2718400 FORWARD LENGTH=227)

HSP 1 Score: 50.0618 bits (118), Expect = 3.394e-7
Identity = 26/63 (41.27%), Postives = 34/63 (53.97%), Query Frame = -2

Query:    2 GVAAVSPKRLIVAAAASAPKKSWIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKW 190
            G    SPK+   A    + +  W PG         PE+LDGSL GD+GFDP GLGK   +L++
Sbjct:   36 GTKKASPKK---AKTVISDRPLWFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQF 89

[Close]

BLAST of AM161708 vs. TAIR peptide
Match: AT3G54890.4 (| Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339881-20340922 REVERSE LENGTH=213)

HSP 1 Score: 48.521 bits (114), Expect = 9.876e-7
Identity = 32/78 (41.03%), Postives = 38/78 (48.72%), Query Frame = -2

Query:    5 GVAAVSPKRL------IVAAAASAPKKS----------WIPGVSFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLK 190
            G+AAV P  L       V+A    P             W+PG         P +LDGS PGDFGFDPLGLG+ PA L+
Sbjct:   10 GIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEP------RPAYLDGSAPGDFGFDPLGLGEVPANLE 81

The following BLAST results are available for this feature:

BLAST of AM161708 vs. TrEMBL
BLAST of AM161708 vs. SwissProt
BLAST of AM161708 vs. TAIR peptide

BLAST of AM161708 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q9XQB6_PHAAU	5.281e-34	79.80	Chlorophyll a/b-binding protein CP24 OS=Phaseolus ...	[more]
C6T0J3_SOYBN	1.177e-33	77.23	Putative uncharacterized protein (Fragment) OS=Gly...	[more]
C6T4E5_SOYBN	5.839e-33	76.00	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TLI1_SOYBN	1.031e-29	70.71	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7STF1_VITVI	3.917e-29	67.01	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5ASW8_VITVI	3.917e-29	67.01	Putative uncharacterized protein OS=Vitis vinifera...	[more]
Q9XF90_ARATH	6.253e-27	64.65	Lhcb6 protein OS=Arabidopsis thaliana GN=Lhcb6 PE=...	[more]
Q9LMQ2_ARATH	6.253e-27	64.65	Chlorophyll A-B binding protein OS=Arabidopsis tha...	[more]
Q0PWS6_TOBAC	5.293e-26	64.95	Chloroplast pigment-binding protein CP24 OS=Nicoti...	[more]
D1MWY9_CITLA	1.179e-25	63.92	Light-harvesting complex II protein OS=Citrullus l...	[more]

BLAST of AM161708 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 7


Match Name	E-value	Identity	Description
CB4B_SOLLC	4.390e-27	61.62	Chlorophyll a-b binding protein CP24 10B, chloropl...	[more]
CB4_SPIOL	6.340e-26	60.78	Chlorophyll a-b binding protein CP24, chloroplasti...	[more]
CB4A_SOLLC	6.340e-26	63.92	Chlorophyll a-b binding protein CP24 10A, chloropl...	[more]
CB12_PETHY	5.210e-12	53.97	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB12_SOLLC	1.086e-9	45.45	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB24_PEA	6.591e-7	54.35	Chlorophyll a-b binding protein P4, chloroplastic ...	[more]
CA4_ARATH	8.608e-7	54.35	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]

BLAST of AM161708 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT1G15820.1	2.416e-29	64.65	\| Symbols: LHCB6, CP24 \| light harvesting complex ...	[more]
AT3G61470.1	1.573e-12	54.55	\| Symbols: LHCA2 \| photosystem I light harvesting ...	[more]
AT1G19150.1	2.272e-11	70.73	\| Symbols: LHCA6, LHCA2*1 \| photosystem I light ha...	[more]
AT1G45474.2	1.055e-8	52.27	\| Symbols: LHCA5 \| photosystem I light harvesting ...	[more]
AT1G45474.1	1.055e-8	52.27	\| Symbols: LHCA5 \| photosystem I light harvesting ...	[more]
AT3G47470.1	6.840e-8	54.35	\| Symbols: LHCA4, CAB4 \| light-harvesting chloroph...	[more]
AT5G01530.1	1.167e-7	44.83	\| Symbols: LHCB4.1 \| light harvesting complex phot...	[more]
AT3G08940.2	3.394e-7	41.27	\| Symbols: LHCB4.2 \| light harvesting complex phot...	[more]
AT3G08940.1	3.394e-7	41.27	\| Symbols: LHCB4.2 \| light harvesting complex phot...	[more]
AT3G54890.4	9.876e-7	41.03	\| Symbols: LHCA1 \| photosystem I light harvesting ...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 6..29 score: NAcoord: 55..67 score: NAcoord: 79..88 score
None	No IPR available	SEG	seg	seg	coord: 1..43 score
None	No IPR available	GENE3D	1.10.3460.10	no description	coord: 77..105 score: 1.6
None	No IPR available	SEG	seg	seg	coord: 16..27 score
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 53..105 score: 4.6
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 9..105 score: 4.6
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 78..102 score: 1.8

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>AM161708 ID=AM161708; Name=AM161708; organism=Pisum sativum; type=EST; length=341bp
ACCATTTGAGAAATGCTGGGTCCTTGCCAAGGCCTAGTGGGTCGAAACCA
AAGTCACCCGGTAGCGATCCGTCGAGCCATTCGGGGTCGACGAGGTTTCC
ACCGAAACTAACACCAGGGATCCATGATTTCTTAGGTGCAGAAGCAGCAG
CAGCAACAATAAGTCTTTTAGGACTAACAGCTGCAACACCAACTTTGCTT
CCAATGGCAGTAGCTAGCAAGGTTTGGCTCCTCTTTCCACCAGATAAGAA
GGAAGATCCCAAACCATTCAACACAGCACCAGATGTTGCAGCTGCCATTT
CTATTCTCTTCACACTCTAAAGAAGTTTCACTAAAGATGTA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind

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