AM162006
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of AM162006 vs. TrEMBL
Match: B9SQW7_RICCO (Eukaryotic translation initiation factor 3 subunit, putative OS=Ricinus communis GN=RCOM_1404940 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.139e-19 Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNAN-ARKPKVQDIEIDDQPEGGANALNI 331 LKG + TV+DTS+L VVVV HCGYTA VK N P QDI+I+DQPE GANALN+ Sbjct: 467 LKGITADESATVHDTSTLGVVVVRHCGYTAVVKVSAEVNWDGNPIPQDIDIEDQPEEGANALNV 530 HSP 2 Score: 42.3578 bits (98), Expect = 2.139e-19 Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1 Query: 4 NSSPGSVLHQDHVGDLSIVVER---DGNGKFDSTLNESSK-----RNDEIQKNLIKGLSADES 168 N S S+LH++ VGDL I V R D + K D N+ S+ + D Q+NL+KG++ADES Sbjct: 414 NDSTPSILHEEKVGDLIIKVTRDVPDASTKLDCK-NDGSRVLGMSQEDLAQRNLLKGITADES 475 HSP 3 Score: 27.7202 bits (60), Expect = 2.139e-19 Identity = 14/35 (40.00%), Postives = 17/35 (48.57%), Query Frame = 3 Query: 306 KEAQMLLTYNSLRALLHKSGAESSEGTLTSLSNFD 410 +E L NSLR LLHKS S T+ + D Sbjct: 522 EEGANALNVNSLRMLLHKSSTPQSSSTIQRVQTGD 556
BLAST of AM162006 vs. TrEMBL
Match: D7U1G6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_37.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00023693001 PE=4 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.032e-18 Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNAN-ARKPKVQDIEIDDQPEGGANALNI 331 LKG + TV+DTS+L VV+V HCGYTA VK N P QDI+I+DQPEGGANALN+ Sbjct: 443 LKGITADESATVHDTSTLGVVIVRHCGYTAVVKVPAKVNWEGNPIPQDIDIEDQPEGGANALNV 506 HSP 2 Score: 40.0466 bits (92), Expect = 1.032e-18 Identity = 23/62 (37.10%), Postives = 34/62 (54.84%), Query Frame = 1 Query: 4 NSSPGSVLHQDHVGDLSIVVERDG-------NGKFDSTLNESSKRNDEIQKNLIKGLSADES 168 N G+V H++ +GDL I V RD +GK D + + Q+NL+KG++ADES Sbjct: 390 NGPNGTVFHEERIGDLIIRVTRDVPDASLKLDGKNDGGQVLGMSKEELSQRNLLKGITADES 451 HSP 3 Score: 24.6386 bits (52), Expect = 1.032e-18 Identity = 12/30 (40.00%), Postives = 15/30 (50.00%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESSEGTLTSLSNFDD 413 L NSLR LLHKS + +F+D Sbjct: 504 LNVNSLRMLLHKSSTPQASVQRLQSGDFED 533
BLAST of AM162006 vs. TrEMBL
Match: A5BLW1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008490 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.675e-18 Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNAN-ARKPKVQDIEIDDQPEGGANALNI 331 LKG + TV+DTS+L VV+ HCGYTA VK N P QDI+I+DQPEGGANALN+ Sbjct: 448 LKGITADESATVHDTSTLGVVIXRHCGYTAVVKVPAKVNWEGNPIPQDIDIEDQPEGGANALNV 511 HSP 2 Score: 40.0466 bits (92), Expect = 3.675e-18 Identity = 23/62 (37.10%), Postives = 34/62 (54.84%), Query Frame = 1 Query: 4 NSSPGSVLHQDHVGDLSIVVERDG-------NGKFDSTLNESSKRNDEIQKNLIKGLSADES 168 N G+V H++ +GDL I V RD +GK D + + Q+NL+KG++ADES Sbjct: 395 NGPNGTVFHEERIGDLIIRVTRDVHDASMKLDGKNDGGQVLGMSKEELSQRNLLKGITADES 456 HSP 3 Score: 24.6386 bits (52), Expect = 3.675e-18 Identity = 12/30 (40.00%), Postives = 15/30 (50.00%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESSEGTLTSLSNFDD 413 L NSLR LLHKS + +F+D Sbjct: 509 LNVNSLRMLLHKSSTPQASVQRLQSGDFED 538
BLAST of AM162006 vs. TrEMBL
Match: B9RVA6_RICCO (Eukaryotic translation initiation factor 3 subunit, putative OS=Ricinus communis GN=RCOM_0901430 PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.629e-17 Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKVQDIEIDDQPEGGANALNI 331 LKG + V+DTSSL +V+V HCGYTATV+ VG N R+ + QDIEI+DQP+GG+NALNI Sbjct: 230 LKGLTADESVVVHDTSSLGIVIVRHCGYTATVRVVGEVNKRRFEAQDIEINDQPDGGSNALNI 292 HSP 2 Score: 29.6462 bits (65), Expect = 4.629e-17 Identity = 16/32 (50.00%), Postives = 17/32 (53.12%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESSEGTLTSLSNFDDLD 419 L NSLR LLHKS S G S FDD + Sbjct: 290 LNINSLRVLLHKSCFAESSGGQPPHSTFDDTE 321
BLAST of AM162006 vs. TrEMBL
Match: B9HBF1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_561366 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 8.449e-17 Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNAN-ARKPKVQDIEIDDQPEGGANALNI 331 LKG + TV+DT +L VVVV HCG+TA VKA N P QDI I++ PEGGANALN+ Sbjct: 372 LKGITADESATVHDTPTLGVVVVRHCGFTAVVKASSEVNWEGDPIPQDISIEEHPEGGANALNV 435 HSP 2 Score: 35.4242 bits (80), Expect = 8.449e-17 Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 1 Query: 19 SVLHQDHVGDLSIVVERDGNG-------KFDSTLNESSKRNDEIQKNLIKGLSADES 168 S LH++ VGDL I++ RD + K D + + ++NL+KG++ADES Sbjct: 324 SFLHEERVGDLIIIITRDVSDASTKLDCKNDGCQVLGVSQEELARRNLLKGITADES 380 HSP 3 Score: 28.8758 bits (63), Expect = 8.449e-17 Identity = 15/29 (51.72%), Postives = 15/29 (51.72%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESSEGTLTSLSNFD 410 L NSLR LLHKS S TL L D Sbjct: 433 LNVNSLRMLLHKSSTPQSSNTLQRLQGGD 461
BLAST of AM162006 vs. TrEMBL
Match: C5XUE0_SORBI (Putative uncharacterized protein Sb04g035700 OS=Sorghum bicolor GN=Sb04g035700 PE=4 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 2.225e-16 Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNAN-ARKPKVQDIEIDDQPEGGANALNIQQF 340 LKG + V+DT++L VV+V HCGYTA V+ N Q+I I+DQPEGG+NALN+ F Sbjct: 431 LKGITADESAIVHDTATLGVVIVKHCGYTAVVQVPVNTELTTSVAQQEIHIEDQPEGGSNALNVNSF 497 HSP 2 Score: 46.595 bits (109), Expect = 2.225e-16 Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 1 Query: 1 TNSSPGSVLHQDHVGDLSIVVER---DGNGKFDSTLNES---SKRNDEI-QKNLIKGLSADES 168 TN + GSVLH + VGD+ I++ + D + K D L+ S +DE+ Q+NL+KG++ADES Sbjct: 377 TNGTIGSVLHTEQVGDMKIMITKDKTDASSKLDVKLDGSQAPGMSSDELAQRNLLKGITADES 439
BLAST of AM162006 vs. TrEMBL
Match: D7U170_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00017381001 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.081e-15 Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKVQDIEIDDQPEGGANALNI 331 LKG + V+DTSSL VV+V HCGYTATV+ G+ K QDIEIDDQP+GGAN+LN+ Sbjct: 442 LKGVTADESVVVHDTSSLGVVIVRHCGYTATVQVAGDVQKGKLMAQDIEIDDQPDGGANSLNV 504 HSP 2 Score: 27.335 bits (59), Expect = 3.081e-15 Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 3 Query: 324 LTYNSLRALLHKS-GAESSEGTLTSLSNFDD 413 L NSLR LLHKS AES+ G + + DD Sbjct: 502 LNVNSLRVLLHKSCSAESTGGCHSPQATVDD 532
BLAST of AM162006 vs. TrEMBL
Match: A5BZB0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010381 PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.982e-15 Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKVQDIEIDDQPEGGANALNI 331 LKG + V+DTSSL VV+V HCGYTAT++ G+ K QDIEIDDQP+GGAN+LN+ Sbjct: 398 LKGVTADESVVVHDTSSLGVVIVRHCGYTATIQVAGDVQKGKLMAQDIEIDDQPDGGANSLNV 460 HSP 2 Score: 27.335 bits (59), Expect = 3.982e-15 Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 3 Query: 324 LTYNSLRALLHKS-GAESSEGTLTSLSNFDD 413 L NSLR LLHKS AES+ G + + DD Sbjct: 458 LNVNSLRVLLHKSCSAESTGGCHSPQATVDD 488
BLAST of AM162006 vs. TrEMBL
Match: D7MDN3_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_913715 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 6.609e-15 Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKV-QDIEIDDQPEGGANALNI 331 LKG + TV+DTS+L VVVV HCG TA VK ++ QDI+I+DQ EGGANALN+ Sbjct: 460 LKGITADESATVHDTSTLGVVVVRHCGCTAIVKVAPEFKLNDGQILQDIDIEDQSEGGANALNV 523 HSP 2 Score: 35.039 bits (79), Expect = 6.609e-15 Identity = 20/54 (37.04%), Postives = 30/54 (55.56%), Query Frame = 1 Query: 28 HQDHVGDLSIVVERDG-------NGKFDSTLNESSKRNDEIQKNLIKGLSADES 168 H++ +GDL I V RD + K D T + + Q+NL+KG++ADES Sbjct: 415 HEERIGDLIIRVARDDPDASAKLDRKSDGTQVLEISQEELAQRNLLKGITADES 468 HSP 3 Score: 25.7942 bits (55), Expect = 6.609e-15 Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESS 377 L NSLR+LLHKS SS Sbjct: 521 LNVNSLRSLLHKSSTPSS 538
BLAST of AM162006 vs. TrEMBL
Match: A3A568_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_06127 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.433e-14 Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKV--QDIEIDDQPEGGANALNI 331 LKG + TV+DT++L VVVV HCGYTA V+ +A + DI+I+DQPEGG+NALN+ Sbjct: 448 LKGITADESATVHDTATLGVVVVKHCGYTAVVQVPADAQLTTVSLAQHDIDIEDQPEGGSNALNV 512 HSP 2 Score: 35.8094 bits (81), Expect = 1.433e-14 Identity = 23/62 (37.10%), Postives = 34/62 (54.84%), Query Frame = 1 Query: 4 NSSPGSVLHQDHVGDLSIVVERD---GNGKFDSTLNESSKR---NDEIQK-NLIKGLSADES 168 N + LH +GD+ I V +D + K D L+ S +DE+ K NL+KG++ADES Sbjct: 395 NDTTNPDLHTQQIGDMKITVTKDKADASSKLDVKLDGSQAPGMLSDELAKRNLLKGITADES 456 HSP 3 Score: 22.3274 bits (46), Expect = 1.433e-14 Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESSEG 383 L NSLR LLHK + S G Sbjct: 510 LNVNSLRMLLHKPCIQPSGG 529
BLAST of AM162006 vs. TAIR peptide
Match: AT4G28080.1 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13948993-13957840 REVERSE LENGTH=1819) HSP 1 Score: 62.7734 bits (151), Expect = 6.558e-17 Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKV-QDIEIDDQPEGGANALNI 331 LKG + TV+DTS+L VVVV HCG TA VK + QDI+I+DQ EGGANALN+ Sbjct: 460 LKGITADESATVHDTSTLGVVVVRHCGCTAIVKVASEFKLNDGHILQDIDIEDQSEGGANALNV 523 HSP 2 Score: 34.6538 bits (78), Expect = 6.558e-17 Identity = 19/54 (35.19%), Postives = 30/54 (55.56%), Query Frame = 1 Query: 28 HQDHVGDLSIVVERDG-------NGKFDSTLNESSKRNDEIQKNLIKGLSADES 168 H++ +GDL + V RD + K D T + + Q+NL+KG++ADES Sbjct: 415 HEERIGDLIVRVARDDPDASAKLDRKSDGTQVLEISQEELAQRNLLKGITADES 468 HSP 3 Score: 25.409 bits (54), Expect = 6.558e-17 Identity = 12/18 (66.67%), Postives = 12/18 (66.67%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESS 377 L NSLR LLHKS SS Sbjct: 521 LNVNSLRTLLHKSSTPSS 538
BLAST of AM162006 vs. TAIR peptide
Match: AT1G01320.1 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:121582-130099 REVERSE LENGTH=1797) HSP 1 Score: 49.2914 bits (116), Expect = 4.029e-12 Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKVQDIEIDDQPEGGANALNI 331 LKG + +D ++L + + +CGY A VK + P Q +++ +QPEGGANALNI Sbjct: 433 LKGLTADENTAAHDVATLGTISLKYCGYIAVVKLEKESEELSPPSQIVDLLEQPEGGANALNI 495 HSP 2 Score: 31.5722 bits (70), Expect = 4.029e-12 Identity = 18/56 (32.14%), Postives = 30/56 (53.57%), Query Frame = 1 Query: 22 VLHQDHVGDLSIVVERDGNG-------KFDSTLNESSKRNDEIQKNLIKGLSADES 168 VL+ + V DL++ V RD + K D + +++NL+KGL+ADE+ Sbjct: 386 VLYSETVRDLTVTVTRDTSNASSKVDTKIDGIQATGLDKKKLMERNLLKGLTADEN 441 HSP 3 Score: 25.409 bits (54), Expect = 4.029e-12 Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESSEGT 386 L NSLR LLHKS E ++ T Sbjct: 493 LNINSLRFLLHKSSPEQNKKT 513
BLAST of AM162006 vs. TAIR peptide
Match: AT1G01320.2 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:121582-130099 REVERSE LENGTH=1787) HSP 1 Score: 49.2914 bits (116), Expect = 4.030e-12 Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKVQDIEIDDQPEGGANALNI 331 LKG + +D ++L + + +CGY A VK + P Q +++ +QPEGGANALNI Sbjct: 433 LKGLTADENTAAHDVATLGTISLKYCGYIAVVKLEKESEELSPPSQIVDLLEQPEGGANALNI 495 HSP 2 Score: 31.5722 bits (70), Expect = 4.030e-12 Identity = 18/56 (32.14%), Postives = 30/56 (53.57%), Query Frame = 1 Query: 22 VLHQDHVGDLSIVVERDGNG-------KFDSTLNESSKRNDEIQKNLIKGLSADES 168 VL+ + V DL++ V RD + K D + +++NL+KGL+ADE+ Sbjct: 386 VLYSETVRDLTVTVTRDTSNASSKVDTKIDGIQATGLDKKKLMERNLLKGLTADEN 441 HSP 3 Score: 25.409 bits (54), Expect = 4.030e-12 Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 3 Query: 324 LTYNSLRALLHKSGAESSEGT 386 L NSLR LLHKS E ++ T Sbjct: 493 LNINSLRFLLHKSSPEQNKKT 513
BLAST of AM162006 vs. TAIR peptide
Match: AT1G15290.1 (| Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5257327-5264814 REVERSE LENGTH=1608) HSP 1 Score: 57.3806 bits (137), Expect = 3.279e-9 Identity = 29/63 (46.03%), Postives = 36/63 (57.14%), Query Frame = 2 Query: 143 LKGCLRMKVYTVNDTSSLAVVVVHHCGYTATVKAVGNANARKPKVQDIEIDDQPEGGANALNI 331 LKG + V+DT +L V+V CGYTA V G +DI IDD P+GGANALN+ Sbjct: 421 LKGITADESVIVHDTPALGKVIVRQCGYTAVVNVKGQTQKAMSDFRDILIDDLPDGGANALNL 483 The following BLAST results are available for this feature:
BLAST of AM162006 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of AM162006 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >AM162006 ID=AM162006; Name=AM162006; organism=Pisum sativum; type=EST; length=420bpback to top |