A consensus linkage map of lentil based on DArT markers from three RIL mapping populations

Publication Overview
TitleA consensus linkage map of lentil based on DArT markers from three RIL mapping populations
AuthorsAtes D, Aldemir S, Alsaleh A, Erdogmus S, Nemli S, Kahriman A, Ozkan H, Vandenberg A, Tanyolac B
TypeJournal Article
Journal NamePloS one
Volume13
Issue1
Year2018
Page(s)e0191375
CitationAtes D, Aldemir S, Alsaleh A, Erdogmus S, Nemli S, Kahriman A, Ozkan H, Vandenberg A, Tanyolac B. A consensus linkage map of lentil based on DArT markers from three RIL mapping populations. PloS one. 2018; 13(1):e0191375.

Abstract

BACKGROUND
Lentil (Lens culinaris ssp. culinaris Medikus) is a diploid (2n = 2x = 14), self-pollinating grain legume with a haploid genome size of about 4 Gbp and is grown throughout the world with current annual production of 4.9 million tonnes.

MATERIALS AND METHODS
A consensus map of lentil (Lens culinaris ssp. culinaris Medikus) was constructed using three different lentils recombinant inbred line (RIL) populations, including "CDC Redberry" x "ILL7502" (LR8), "ILL8006" x "CDC Milestone" (LR11) and "PI320937" x "Eston" (LR39).

RESULTS
The lentil consensus map was composed of 9,793 DArT markers, covered a total of 977.47 cM with an average distance of 0.10 cM between adjacent markers and constructed 7 linkage groups representing 7 chromosomes of the lentil genome. The consensus map had no gap larger than 12.67 cM and only 5 gaps were found to be between 12.67 cM and 6.0 cM (on LG3 and LG4). The localization of the SNP markers on the lentil consensus map were in general consistent with their localization on the three individual genetic linkage maps and the lentil consensus map has longer map length, higher marker density and shorter average distance between the adjacent markers compared to the component linkage maps.

CONCLUSION
This high-density consensus map could provide insight into the lentil genome. The consensus map could also help to construct a physical map using a Bacterial Artificial Chromosome library and map based cloning studies. Sequence information of DArT may help localization of orientation scaffolds from Next Generation Sequencing data.

Stocks
This publication contains information about 9 stocks:
Stock NameUniquenameType
LR8LR8population
LR11LR11population
LR39LR39population
CDC RedberryCDC Redberrycultivar
ILL8006ILL8006cultivar
PI320937PI320937breeding_research_material
ILL7502ILL7502cultivar
CDC MilestoneCDC Milestonecultivar
EastonEastoncultivar
Featuremaps
This publication contains information about 4 maps:
Map Name
Lentil-LR8-F1-2018
Lentil-LR11-F1-2018
Lentil-LR39-F1-2018
Lentil-LR8LR11LR39Consensus-F1-2018
Properties
Additional details for this publication include:
Property NameValue
Publication ModelElectronic-eCollection
ISSN1932-6203
eISSN1932-6203
Publication Date2018
Journal AbbreviationPLoS ONE
DOI10.1371/journal.pone.0191375
Elocation10.1371/journal.pone.0191375
Publication TypeJournal Article
Journal CountryUnited States
LanguageEnglish
Language Abbreng
Cross References
This publication is also available in the following databases:
DatabaseAccession
PMID: PubMedPMID:29351563