CakTSSR00546, CakTSSR00546 (genetic_marker) Cicer arietinum | PulseDB

Marker Overview

Marker Overview


Name	CakTSSR00546
Genbank ID	N/A
Type	SSR
Species	Cicer arietinum
Germplasm	ICCV2
Repeat Motif	(AGA)5
Primer 1	CakTSSR00546.Forward primer: GATCTTGAGTGGGATGAGATT
Primer 2	CakTSSR00546.Reverse primer: CATCATCTTCAATATCCCAAC
Product Length	151
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr3LG5	supercontig	chr3LG5:139628472..139628619 .	Pisum sativum Cameor genome v1a	PCD marker alignment to genome using primer sequences
chr3	chromosome	chr3:30320120..30320270 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences
Vu01	supercontig	Vu01:30763147..30763300 .	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	PCD marker alignment to genome using primer sequences
chr03	chromosome	chr03:804512..804656 .	Vigna radiata cv. VC1973A genome v6.0	PCD marker alignment to genome using primer sequences
Chr_3-CM003373.1	supercontig	Chr_3-CM003373.1:32613106..32613253 .	Vigna angularis Jingnong 6 genome v1.1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2012	Agarwal G, Jhanwar S, Priya P, Singh VK, Saxena MS, Parida SK, Garg R, Tyagi AK, Jain M. Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PloS one. 2012; 7(12):e52443.

Germplasm


Stock Name	Type
ICCV2	accession