CaM0177, CaM0177 (genetic_marker) Cicer arietinum | PulseDB

Marker Overview

Marker Overview


Name	CaM0177
Genbank ID	EI850685
Type	SSR
Species	Cicer arietinum
Germplasm	ICC4958
Repeat Motif	(AT)5n(TA)7
Primer 1	CaM0177.Forward primer: TTTCATGACCAAACAATTCCA
Primer 2	CaM0177.Reverse primer: GGCTTTTCCTTGATCAACCC
Product Length	277
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	EI850685

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold250	supercontig	scaffold250:20236..20512 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
scaffold250	chromosome	scaffold250:20236..20512 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2011	Thudi M, Bohra A, Nayak SN, Varghese N, Shah TM, Penmetsa RV, Thirunavukkarasu N, Gudipati S, Gaur PM, Kulwal PL, Upadhyaya HD, Kavikishor PB, Winter P, Kahl G, Town CD, Kilian A, Cook DR, Varshney RK. Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.). PloS one. 2011; 6(11):e27275.

Germplasm


Stock Name	Type
ICC4958	accession