TA1, TA1 (genetic_marker) Cicer arietinum | PulseDB

Marker Overview

Marker Overview


Name	TA1
Genbank ID	N/A
Type	STMS
Species	Cicer arietinum
Germplasm	ILC3279
Repeat Motif	(TAA)32
Primer 1	TA1.Forward primer: TGAAATATGGAATGATTACTGAGTGAC
Primer 2	TA1.Reverse primer: TATTGAAATAGGTCAGGCTTATAAAAA
Product Length	243
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold397	supercontig	scaffold397:303563..303774 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
scaffold397	chromosome	scaffold397:303563..303774 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
1999	Winter P, Pfaff T, Udupa SM, Huttel B, Sharma PC, Sahi S, Arrequin-Espinoza R, Weigand F, Muehlbauer FJ, Kahl G. Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome. Mol Gen Genet. 1999; 262:90-101.

Germplasm


Stock Name	Type
ILC3279	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICCV2xJG62-RIL	LG7	N/A	1.7	TA1	View
2	chickpea-ICCV96029xCDCFrontier-F2	LG5	N/A	47.5	TA1	View
3	chickpea-ICC4958xPI489777-RIL-2011	LG1	N/A	47.5	TA1	View
4	chickpea-ICC4958xPI489777-RIL-F10	LG1	N/A	45.94	TA1	View
5	chickpea-ICCV96029xCDCFrontier-F2-2007	LG5	N/A	47.5	TA1	View
6	chickpea-HadasxCr205-F2	LG1B	N/A	0	TA1	View
7	chickpea-ICC4958xPI489777-RIL-F10-2012	LG01	N/A	62.91	TA1	View
8	chickpea-ICC3996xILWC184-F2	LG1	N/A	16.9	TA1	View
9	Chickpea-ICC4958× ICC1882-RIL	CaLG01	N/A	34.59	TA1	View