PBA_LC_0507, PBA_LC_0507 (genetic_marker) Lens culinaris | PulseDB

Marker Overview

Marker Overview


Name	PBA_LC_0507
Genbank ID	N/A
Type	EST-SSR
Species	Lens culinaris
Repeat Motif	TCTGT(3)
Primer 1	PBA_LC_0507.Forward primer: ACACACTTCAATGGAATCATC
Primer 2	PBA_LC_0507.Reverse primer: GAAAGAAGACGCTTCAGAGTT
Product Length	173
Publication	[view all]
Contact	John W. Forster

Contact

Name

Details

John W. Forster

First name:	John
Last name:	Forster
Institution:	La Trobe University Research and Development Park
Address:	Bundoora, VIC 3083, Australia
Country:	Australia
Email:	john.forster@depi.vic.gov.au

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr6LG2	supercontig	chr6LG2:15611899..15612057 .	Pisum sativum Cameor genome v1a	PCD marker alignment to genome using primer sequences
Ca4	chromosome	Ca4:45081423..45081589 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr4	chromosome	chr4:45081423..45081589 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences
Lcu.2RBY.Chr5	supercontig	Lcu.2RBY.Chr5:463251760..463251932 .	Lens culinaris CDC Redberry genome v2.0	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2011	Kaur S, Cogan NO, Pembleton LW, Shinozuka M, Savin KW, Materne M, Forster JW. Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery. BMC genomics. 2011; 12:265.