BMc-006 | PulseDB

Marker Overview

Marker Overview


Name	BMc-006
Genbank ID	HO212323
Type	EST-SSR
Species	Phaseolus vulgaris
Repeat Motif	(ATG)5
Primer 1	BMc-006.Forward: TTGGCTTTGGTGGATACTCA
Primer 2	BMc-006.Reverse: CAAAACCAAGAAACCCATCAA
Product Length	139
Publication	[view all]
Contact	Matthew Blair

Contact

Name

Details

Matthew Blair

First name:	Matthew
Last name:	Blair
Institution:	International Center for Tropical Agriculture
Country:	Colombia
Email:	mwblaircgiar@gmail.com
Last update:	Aug 2009

References

External references for this genetic_marker


Database	Accession
DB:genbank	HO212323

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr07	supercontig	Chr07:29286129..29286267 .	Phaseolus vulgaris G19833 genome v2.1	PCD marker alignment to genome using primer sequences
Chr07_WLD	supercontig	Chr07_WLD:31158790..31158928 .	Phaseolus acutifolius acc. W6 15578 genome v2.0	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2011	Blair MW, Hurtado N, Chavarro CM, Muñoz-Torres MC, Giraldo MC, Pedraza F, Tomkins J, Wing R. Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series. BMC plant biology. 2011 Mar 22; 11:50.