NDSU_IND_01_04.8474 | PulseDB

Marker Overview

Marker Overview


Name	NDSU_IND_01_04.8474
Genbank ID	N/A
Type	Indel
Species	Phaseolus vulgaris
Primer 1	NDSU_IND_01_04.8474.Forward: TCCAATCCAAGTACTGGGTCAGAAACC
Primer 2	NDSU_IND_01_04.8474.Reverse: CCCTCCACTAGGAAGACCCAGTTCAA
Max Length	121
Publication	[view all]
Contact	Phillip E. McClean

Contact

Name

Details

Phillip E. McClean

First name:	Phillip
Last name:	McClean
Institution:	North Dakota State University
Email:	phillip.mcclean@ndsu.edu

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr01	supercontig	Chr01:4681765..4681873 .	Phaseolus vulgaris G19833 genome v2.1	PCD marker alignment to genome using primer sequences
Chr01_WLD	supercontig	Chr01_WLD:4660938..4661046 .	Phaseolus acutifolius acc. W6 15578 genome v2.0	PCD marker alignment to genome using primer sequences
Pl01_G27455	supercontig	Pl01_G27455:4801867..4801980 .	Phaseolus lunatus cv. G27455 genome v1.0	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Moghaddam SM, Song Q, Mamidi S, Schmutz J, Lee R, Cregan P, Osorno JM, McClean PE. Developing market class specific InDel markers from next generation sequence data in Phaseolus vulgaris L. Frontiers in plant science. 2014; 5:185.