Magnesium content

QTL Overview


QTL Label	qMGCONC.Cerinza/G10022.LG03.sc
Published Symbol	Mg_coat-LG03:AG-001
Trait Name	Magnesium content
Trait Alias	N/A
Trait Study	Bean-Seed_coat_micronutrients-Blair-2013
Population	Cerinza/G10022-BC2F2:5
Female Parent	Cerinza
Male Parent	G10022
Colocalizing Marker	AG-001
Neighboring Marker	N/A
Environment	N/A
LOD	6.02
Additivity Dominance Ratio	N/A
R2	0.1
Comments	N/A

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr03	supercontig	Chr03:28340451..28340573 .	Phaseolus vulgaris G19833 genome v2.1	PCD QTL alignment to genome using associated markers
Chr03_WLD	supercontig	Chr03_WLD:19437355..19437485 .	Phaseolus acutifolius acc. W6 15578 genome v2.0	PCD QTL alignment to genome using associated markers
Chr_1-CM003371.1	supercontig	Chr_1-CM003371.1:38783541..38783680 .	Vigna angularis Jingnong 6 genome v1.1	PCD QTL alignment to genome using associated markers
Pl03_G27455	supercontig	Pl03_G27455:22147011..22147163 .	Phaseolus lunatus cv. G27455 genome v1.0	PCD QTL alignment to genome using associated markers

Publications


Year	Publication
2013	Blair MW, Izquierdo P, Astudillo C, Grusak MA. A legume biofortification quandary: variability and genetic control of seed coat micronutrient accumulation in common beans. Frontiers in plant science. 2013; 4:275.

Map Positions


#	Map Name	Linkage Group	Bin	Chromosome	Peak	Span Start	Span Stop	MapViewer
1	Bean-Cerinza/G10022-BC2	LG03	N/A	N/A	208	-	-	View

Sequences

The following sequences are available for this feature:

QTL from alignment at Chr03:28340451..28340573
QTL from alignment at Chr03_WLD:19437355..19437485
QTL from alignment at Chr_1-CM003371.1:38783541..38783680
QTL from alignment at Pl03_G27455:22147011..22147163

QTL from alignment at Chr03:28340451..28340573

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qMGCONC.Cerinza/G10022.LG03.sc ID=qMGCONC.Cerinza/G10022.LG03.sc; Name=Magnesium content; organism=Phaseolus vulgaris; type=QTL; length=123bp; location=Sequence derived from: Chr03:28340451..28340573 (Phaseolus vulgaris
CATGCAGAGGAAGCAGAGTGATAGAGTGAGTGTGGTGAGAGAGAGAGAGG
TAGAGAGAGAGAGAGAGAAAGAGAGAGGGAAAAAGAGAGTGAGAGAGGGA
ATCGAATCGAAACGACGACGCTC

QTL from alignment at Chr03_WLD:19437355..19437485

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qMGCONC.Cerinza/G10022.LG03.sc ID=qMGCONC.Cerinza/G10022.LG03.sc; Name=Magnesium content; organism=Phaseolus vulgaris; type=QTL; length=131bp; location=Sequence derived from: Chr03_WLD:19437355..19437485 (Phaseolus acutifolius
CATGCAGAGGAAGCAGAGTGGTAGAGTGAGTGTGGTGAGAGAGAGAGAGG
TAGAGAGAGAGAGGGAGAGAGAGAGAAAGAGAGAGGGAAAAAGAGAGTGA
GAGAGGGAATCGAATCGAAACGACGACGCTC

QTL from alignment at Chr_1-CM003371.1:38783541..38783680

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qMGCONC.Cerinza/G10022.LG03.sc ID=qMGCONC.Cerinza/G10022.LG03.sc; Name=Magnesium content; organism=Phaseolus vulgaris; type=QTL; length=140bp; location=Sequence derived from: Chr_1-CM003371.1:38783541..38783680 (Vigna angularis
GAGCGTCGTCGTTTCGATTCGATtccctctctccctctctttttccctct
ctctttctctctctctctctccctcactctctctctctcagcACACTCAC
TCTCTCACACTCACTCTGCTTCCTCTGCTTCCTCTGCATG

QTL from alignment at Pl03_G27455:22147011..22147163

Legend: genetic_marker

Hold the cursor over a type above to highlight its positions in the sequence below.

>qMGCONC.Cerinza/G10022.LG03.sc ID=qMGCONC.Cerinza/G10022.LG03.sc; Name=Magnesium content; organism=Phaseolus vulgaris; type=QTL; length=153bp; location=Sequence derived from: Pl03_G27455:22147011..22147163 (Phaseolus lunatus
CATGCAGAGGAAGCAGAGTGGGAGAGTGAGTGTGGTGTGGTGAGAGAGAT
GGTTGAGAGAGAGAGAGGGAGAGAGACAGAGAGACAGGGAGAGAGAGAAA
GAGAGAGGGAAAAAGAGAGTGAGAGAGGGAATCGAATCGAAACGACGACG
CTC

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Magnesium content