Lens culinaris unigene v1

Overview
Analysis NameLens culinaris unigene v1
Methodcap3 (1.0)
SourceLens culinaris unigene v1
Date performed2010-12-27

An assembly of 9,513 EST sequences downloaded from NCBI dbEST using the cap3 assembly software (parameter: -p 90). 9,434 ESTs were used after trimming using crossmatch against UniVec_Core (parameter: -minmatch 10 -penalty -2 -minscore 20 -screen) and filtering out rRNA/tRNA contamination using tblastx (parameter: -e 1e-6). Poly-A tail was also trimmed after RNA filtering. The assembly results in 961 contigs and 3,092 singlets.

Properties
Additional information about this analysis:
Property NameValue
Analysis Typetripal_analysis_unigene
Analysis unigene nameLens culinaris unigene v1
Analysis unigene num contigs961
Analysis unigene num reads9,434
Analysis unigene avg length941
Analysis unigene num clusters
Analysis unigene num singlets3,092