Cc_v2.0_23976.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SFC9|A0A151SFC9_CAJCA (Photosystem II repair protein PSB27-H1, chloroplastic OS=Cajanus cajan OX=3821 GN=KK1_024793 PE=3 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 1.618e-118 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR Sbjct: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NAT9|A0A4D6NAT9_VIGUN (Photosystem II Psb27 protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g870 PE=3 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 3.963e-85 Identity = 130/171 (76.02%), Postives = 145/171 (84.80%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTLITPTSTPKSLTP+KPK T++ + S TT + P RR+FLS + V + A+A+SDEEYVKETE+VI KVRTTIT++KNDPNVA+AVA+LRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR Sbjct: 1 MASPTLITPTSTPKSLTPVKPKPTTLVSATLSPTTATATHPRRRQFLSFTASLVSSVLPLAPALASSDEEYVKETEDVINKVRTTITLDKNDPNVATAVADLRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPTKRRARILEEVDTAEKALLRGR 171
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BV38|V7BV38_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G105900g PE=3 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 7.726e-85 Identity = 131/170 (77.06%), Postives = 145/170 (85.29%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPK-TTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTL+TPTSTPKSL P+KPK TT ++A +T +QP RREFLSL + V + AVA+SD+EYVKETE+VI KVRTTIT+EKNDPNV +AVA+LRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR Sbjct: 1 MASPTLLTPTSTPKSLAPIKPKPTTVVSATLTPTTGTTQPRRREFLSLTASLVSSVVPLAPAVASSDDEYVKETEDVINKVRTTITLEKNDPNVETAVADLRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 170
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SHI7|A0A0S3SHI7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G095400 PE=3 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.051e-84 Identity = 132/171 (77.19%), Postives = 146/171 (85.38%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTLITPTSTPKSLTP+KPK T++ + + TT + P RREFLSL + V + AVAASDEEYVKETE+VI KVRTTI+++KNDPNVA+AVA+LRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR Sbjct: 1 MASPTLITPTSTPKSLTPVKPKPTTVVSATITPTTATATHPRRREFLSLTASLVSSVVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9UMC1|A0A0L9UMC1_PHAAN (Photosystem II repair protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0218740 PE=3 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.051e-84 Identity = 132/171 (77.19%), Postives = 146/171 (85.38%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTLITPTSTPKSLTP+KPK T++ + + TT + P RREFLSL + V + AVAASDEEYVKETE+VI KVRTTI+++KNDPNVA+AVA+LRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR Sbjct: 1 MASPTLITPTSTPKSLTPVKPKPTTVVSATITPTTATATHPRRREFLSLTASLVSSVVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3TD87|A0A1S3TD87_VIGRR (Photosystem II repair protein PSB27-H1, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106754237 PE=3 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 6.916e-83 Identity = 130/171 (76.02%), Postives = 145/171 (84.80%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTLITPTSTPKSLT +KPK T++ + + TT + P RREFLSL + V + A+AASDEEYVKETE+VI KVRTTIT++KNDPNVA+AVA+LRE+SNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR Sbjct: 1 MASPTLITPTSTPKSLTTIKPKPTTVVSATLTPTTATATHPRRREFLSLTASLVSSVVPLAPALAASDEEYVKETEDVINKVRTTITLDKNDPNVATAVADLRETSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86VYT8|A0AA86VYT8_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS16713 PE=4 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 1.794e-82 Identity = 131/171 (76.61%), Postives = 143/171 (83.63%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTLITPTSTPK LTP+K K T++ + + TT + P RREFLSL + V + AVAASDEEYVKETEEVI KVRTTIT+EKNDPNVA+AVA+LRESSNSWVAK+RREK LLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR Sbjct: 1 MASPTLITPTSTPKPLTPIKHKPTTVISATLTPTTATTTHPRRREFLSLTASVVSSVVPLAPAVAASDEEYVKETEEVISKVRTTITLEKNDPNVATAVADLRESSNSWVAKFRREKTLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKALLRGR 171
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8KIS2|A0A8B8KIS2_ABRPR (Photosystem II repair protein PSB27-H1, chloroplastic OS=Abrus precatorius OX=3816 GN=LOC113855367 PE=3 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 1.083e-81 Identity = 125/173 (72.25%), Postives = 147/173 (84.97%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAA-RGRSSTTMSQPGRREFLSLVSGSVVCGSWVVG---AVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTLITP+STPKSL+P+KPK T +A ++T + P RREF S ++ S++ +W++ A+AASDEEYVKETEEVI KVR+TI+M+KNDPNVA+AVA+LRESSNSWVAKYRREKALLGR SFRDMYSALNAVSGHYISFG TAPIP KR+ RILEE+DTAEKAL RGR Sbjct: 1 MASPTLITPSSTPKSLSPIKPKPTIVATLTPPAATATTHPRRREFFS-ITASLLSATWLLPLTPALAASDEEYVKETEEVINKVRSTISMDKNDPNVATAVADLRESSNSWVAKYRREKALLGRVSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALQRGR 172
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|W9R838|W9R838_9ROSA (Photosystem II repair protein PSB27-H1 OS=Morus notabilis OX=981085 GN=L484_022156 PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 3.230e-78 Identity = 124/177 (70.06%), Postives = 143/177 (80.79%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSS-----TTMSQPGRREFLSLVSGSVVCGSWVVG---AVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTL+TPTS PK L+P KPK T+ A +S T+M++ RREFLSL + + +W++ A+AA DEEYVKET EVI KVRTTI M+KNDPNVA+AV++LRE+SNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KR+ RILEEVDTAEKAL RGR Sbjct: 1 MASPTLLTPTSQPKPLSPFKPKFTATALNANASANDAGTSMTR--RREFLSLAAVVTLSPAWLLPVRPAMAAEDEEYVKETAEVINKVRTTINMDKNDPNVAAAVSDLRETSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEVDTAEKALSRGR 175
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A072VAN9|A0A072VAN9_MEDTR (Photosystem II Pbs27 protein OS=Medicago truncatula OX=3880 GN=25487627 PE=3 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 6.351e-78 Identity = 124/172 (72.09%), Postives = 144/172 (83.72%), Query Frame = 0 Query: 1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSW---VVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 MASPTLITPTSTPKSL P+K K T+I++ +TT+ RREFLS S +++ ++ V A+AASDEEYVKETEEVI KVRTTIT++KNDPNVA+AVAELR++SNSWVAKYRREKALL RASFRDMYSALNAVSGHYISFG TAPIP KRR RILEE++ AEK+L RGR Sbjct: 1 MASPTLITPTSTPKSLPPIKTKLTTISSTLTPTTTIPS-RRREFLS-TSATILTTTFLAHVTPALAASDEEYVKETEEVISKVRTTITLDKNDPNVATAVAELRDTSNSWVAKYRREKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRRVRILEEIEVAEKSLKRGR 170
BLAST of Cc_v2.0_23976.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LR64|PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 6.592e-60 Identity = 90/134 (67.16%), Postives = 108/134 (80.60%), Query Frame = 0 Query: 41 RREFLSLVSGSVVCGSWV-----VGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 RR+FLSL + S + + AA DEEY+K+T VI KVR+T++M+K DPNVA AVAELRE+SNSWVAKYR+EKALLG+ASFRD+YSALNAVSGHY+SFG TAPIP KR+ RILEE++TAEKAL RGR Sbjct: 41 RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174
BLAST of Cc_v2.0_23976.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8DG60|PSB27_THEVB (Photosystem II assembly factor lipoprotein Psb27 OS=Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1) OX=197221 GN=psb27 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.282e-14 Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 0 Query: 69 YVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLR 167 + ++T +I +R I + +NDPN +A AE R+ N + A YRR+ +L +SF M +ALN+++GHY S+ P+P K + R+ +E E AL R Sbjct: 33 FREDTLALISSLREAIALPENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY-PNRPLPEKLKARLEQEFKQVELALDR 130
BLAST of Cc_v2.0_23976.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P74367|PSB27_SYNY3 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psb27 PE=1 SV=2) HSP 1 Score: 64.6994 bits (156), Expect = 1.225e-12 Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0 Query: 69 YVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRG 168 Y ++T VI +R I + ++ PN R N ++++YRR+ G SF M +ALN+++G+Y S+GA PIP K + R+ E AE+++ RG Sbjct: 35 YSQDTLTVIATLREAIDLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGAR-PIPEKLKKRLQLEFTQAERSIERG 133
BLAST of Cc_v2.0_23976.1 vs. Araport11
Match: | (Symbols: PSB27 | | chr1:898916-899440 FORWARD LENGTH=174) HSP 1 Score: 186.808 bits (473), Expect = 6.878e-61 Identity = 90/134 (67.16%), Postives = 108/134 (80.60%), Query Frame = 0 Query: 41 RREFLSLVSGSVVCGSWV-----VGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169 RR+FLSL + S + + AA DEEY+K+T VI KVR+T++M+K DPNVA AVAELRE+SNSWVAKYR+EKALLG+ASFRD+YSALNAVSGHY+SFG TAPIP KR+ RILEE++TAEKAL RGR Sbjct: 41 RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174 The following BLAST results are available for this feature:
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Cc_v2.0_23976.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot ) Total hits: 3
BLAST of Cc_v2.0_23976.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCajCajn.Asha.2.0.Cc_v2.0_23976.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; Name=Cc_v2.0_23976.1; organism=Cajanus cajan; type=mRNA; length=510bpback to top protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_23976.1 >drCajCajn.Asha.2.0.Cc_v2.0_23976.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; organism=Cajanus cajan; type=polypeptide; length=169bpback to top mRNA from alignment at CcLG10_v2.0:9702247..9703722+ Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>drCajCajn.Asha.2.0.Cc_v2.0_23976.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; Name=Cc_v2.0_23976.1; organism=Cajanus cajan; type=mRNA; length=1476bp; location=Sequence derived from: CcLG10_v2.0:9702247..9703722+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at CcLG10_v2.0:9702247..9703722+ >drCajCajn.Asha.2.0.Cc_v2.0_23976.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; Name=Cc_v2.0_23976.1; organism=Cajanus cajan; type=CDS; length=510bp; location=Sequence derived from: CcLG10_v2.0:9702247..9703722+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|