Cc_v2.0_23976.1

Transcript Overview
NameCc_v2.0_23976.1
Unique NamedrCajCajn.Asha.2.0.Cc_v2.0_23976.1
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length510
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CcLG10_v2.0chromosomeCcLG10_v2.0:9702247..9703722 +Cajanus cajan cv. Asha genome v2.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
avjccaL052Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccaL107Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL0238Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0548Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL0700Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjccaL610Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaL1011Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccaL1056Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
carccaL002Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccapsR091Pisum sativum Cameor genome v1aPisum sativum
ccapvR095Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR079Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccapvR124Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccapvR141Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccavfhR116Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccavssR082Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavssR091Vicia sativa cv. Studenica genome v1.0Vicia sativa
carccaL451Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
ccavuR090Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR109Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavuR099Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccavumR120Vigna umbellata FF25 genome v1.0Vigna umbellata
ccavumR124Vigna umbellata FF25 genome v1.0Vigna umbellata
ccccaL0434Cajanus cajan Asha genome v1.0Cajanus cajan
ccapvfR092Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccavunR082Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccavunR094Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
ccapvfR122Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
ccapvfR134Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
jg43877.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun05g217100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va05G044040.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.1g049840.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun05g217100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Phvul.005G105900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
evm.Ca_v2.0_02381Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
PvulFLAVERTChr05.706Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vum_07G00769.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-KK1_024793Cajanus cajan Asha genome v1.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Cc_v2.0_23976drCajCajn.Asha.2.0.Cc_v2.0_23976Cajanus cajangene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_23976.1.exon1drCajCajn.Asha.2.0.Cc_v2.0_23976.1.exon1Cajanus cajanexon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_23976.1.utr5p1drCajCajn.Asha.2.0.Cc_v2.0_23976.1.utr5p1Cajanus cajanfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Cc_v2.0_23976.1drCajCajn.Asha.2.0.cds.Cc_v2.0_23976.1Cajanus cajanCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Cc_v2.0_23976.1.utr3p1drCajCajn.Asha.2.0.Cc_v2.0_23976.1.utr3p1Cajanus cajanthree_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCajCajn.Asha.2.0.Cc_v2.0_23976.1drCajCajn.Asha.2.0.Cc_v2.0_23976.1Cajanus cajanpolypeptide
drCajCajn.Asha.2.0.Cc_v2.0_23976.1drCajCajn.Asha.2.0.Cc_v2.0_23976.1-proteinCajanus cajanpolypeptide


Homology
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SFC9|A0A151SFC9_CAJCA (Photosystem II repair protein PSB27-H1, chloroplastic OS=Cajanus cajan OX=3821 GN=KK1_024793 PE=3 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 1.618e-118
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR
Sbjct:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NAT9|A0A4D6NAT9_VIGUN (Photosystem II Psb27 protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g870 PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 3.963e-85
Identity = 130/171 (76.02%), Postives = 145/171 (84.80%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTLITPTSTPKSLTP+KPK T++ +   S TT +   P RR+FLS  +  V     +  A+A+SDEEYVKETE+VI KVRTTIT++KNDPNVA+AVA+LRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR
Sbjct:    1 MASPTLITPTSTPKSLTPVKPKPTTLVSATLSPTTATATHPRRRQFLSFTASLVSSVLPLAPALASSDEEYVKETEDVINKVRTTITLDKNDPNVATAVADLRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPTKRRARILEEVDTAEKALLRGR 171          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|V7BV38|V7BV38_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G105900g PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 7.726e-85
Identity = 131/170 (77.06%), Postives = 145/170 (85.29%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPK-TTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTL+TPTSTPKSL P+KPK TT ++A    +T  +QP RREFLSL +  V     +  AVA+SD+EYVKETE+VI KVRTTIT+EKNDPNV +AVA+LRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR
Sbjct:    1 MASPTLLTPTSTPKSLAPIKPKPTTVVSATLTPTTGTTQPRRREFLSLTASLVSSVVPLAPAVASSDDEYVKETEDVINKVRTTITLEKNDPNVETAVADLRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 170          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SHI7|A0A0S3SHI7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G095400 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.051e-84
Identity = 132/171 (77.19%), Postives = 146/171 (85.38%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTLITPTSTPKSLTP+KPK T++ +   + TT +   P RREFLSL +  V     +  AVAASDEEYVKETE+VI KVRTTI+++KNDPNVA+AVA+LRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR
Sbjct:    1 MASPTLITPTSTPKSLTPVKPKPTTVVSATITPTTATATHPRRREFLSLTASLVSSVVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9UMC1|A0A0L9UMC1_PHAAN (Photosystem II repair protein OS=Phaseolus angularis OX=3914 GN=HKW66_Vig0218740 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.051e-84
Identity = 132/171 (77.19%), Postives = 146/171 (85.38%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTLITPTSTPKSLTP+KPK T++ +   + TT +   P RREFLSL +  V     +  AVAASDEEYVKETE+VI KVRTTI+++KNDPNVA+AVA+LRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR
Sbjct:    1 MASPTLITPTSTPKSLTPVKPKPTTVVSATITPTTATATHPRRREFLSLTASLVSSVVPLAPAVAASDEEYVKETEDVINKVRTTISLDKNDPNVATAVADLRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3TD87|A0A1S3TD87_VIGRR (Photosystem II repair protein PSB27-H1, chloroplastic OS=Vigna radiata var. radiata OX=3916 GN=LOC106754237 PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 6.916e-83
Identity = 130/171 (76.02%), Postives = 145/171 (84.80%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTLITPTSTPKSLT +KPK T++ +   + TT +   P RREFLSL +  V     +  A+AASDEEYVKETE+VI KVRTTIT++KNDPNVA+AVA+LRE+SNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR
Sbjct:    1 MASPTLITPTSTPKSLTTIKPKPTTVVSATLTPTTATATHPRRREFLSLTASLVSSVVPLAPALAASDEEYVKETEDVINKVRTTITLDKNDPNVATAVADLRETSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRTRILEEVDTAEKALLRGR 171          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86VYT8|A0AA86VYT8_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS16713 PE=4 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.794e-82
Identity = 131/171 (76.61%), Postives = 143/171 (83.63%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMS--QPGRREFLSLVSGSVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTLITPTSTPK LTP+K K T++ +   + TT +   P RREFLSL +  V     +  AVAASDEEYVKETEEVI KVRTTIT+EKNDPNVA+AVA+LRESSNSWVAK+RREK LLGRASFRDMYSALNAVSGHYISFG TAPIP KRR RILEEVDTAEKALLRGR
Sbjct:    1 MASPTLITPTSTPKPLTPIKHKPTTVISATLTPTTATTTHPRRREFLSLTASVVSSVVPLAPAVAASDEEYVKETEEVISKVRTTITLEKNDPNVATAVADLRESSNSWVAKFRREKTLLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRRARILEEVDTAEKALLRGR 171          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8KIS2|A0A8B8KIS2_ABRPR (Photosystem II repair protein PSB27-H1, chloroplastic OS=Abrus precatorius OX=3816 GN=LOC113855367 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.083e-81
Identity = 125/173 (72.25%), Postives = 147/173 (84.97%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAA-RGRSSTTMSQPGRREFLSLVSGSVVCGSWVVG---AVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTLITP+STPKSL+P+KPK T +A     ++T  + P RREF S ++ S++  +W++    A+AASDEEYVKETEEVI KVR+TI+M+KNDPNVA+AVA+LRESSNSWVAKYRREKALLGR SFRDMYSALNAVSGHYISFG TAPIP KR+ RILEE+DTAEKAL RGR
Sbjct:    1 MASPTLITPSSTPKSLSPIKPKPTIVATLTPPAATATTHPRRREFFS-ITASLLSATWLLPLTPALAASDEEYVKETEEVINKVRSTISMDKNDPNVATAVADLRESSNSWVAKYRREKALLGRVSFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALQRGR 172          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|W9R838|W9R838_9ROSA (Photosystem II repair protein PSB27-H1 OS=Morus notabilis OX=981085 GN=L484_022156 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 3.230e-78
Identity = 124/177 (70.06%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSS-----TTMSQPGRREFLSLVSGSVVCGSWVVG---AVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTL+TPTS PK L+P KPK T+ A    +S     T+M++  RREFLSL +   +  +W++    A+AA DEEYVKET EVI KVRTTI M+KNDPNVA+AV++LRE+SNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFG TAPIP KR+ RILEEVDTAEKAL RGR
Sbjct:    1 MASPTLLTPTSQPKPLSPFKPKFTATALNANASANDAGTSMTR--RREFLSLAAVVTLSPAWLLPVRPAMAAEDEEYVKETAEVINKVRTTINMDKNDPNVAAAVSDLRETSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEVDTAEKALSRGR 175          
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A072VAN9|A0A072VAN9_MEDTR (Photosystem II Pbs27 protein OS=Medicago truncatula OX=3880 GN=25487627 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 6.351e-78
Identity = 124/172 (72.09%), Postives = 144/172 (83.72%), Query Frame = 0
Query:    1 MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSGSVVCGSW---VVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            MASPTLITPTSTPKSL P+K K T+I++    +TT+    RREFLS  S +++  ++   V  A+AASDEEYVKETEEVI KVRTTIT++KNDPNVA+AVAELR++SNSWVAKYRREKALL RASFRDMYSALNAVSGHYISFG TAPIP KRR RILEE++ AEK+L RGR
Sbjct:    1 MASPTLITPTSTPKSLPPIKTKLTTISSTLTPTTTIPS-RRREFLS-TSATILTTTFLAHVTPALAASDEEYVKETEEVISKVRTTITLDKNDPNVATAVAELRDTSNSWVAKYRREKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRRVRILEEIEVAEKSLKRGR 170          
BLAST of Cc_v2.0_23976.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9LR64|PB27A_ARATH (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.592e-60
Identity = 90/134 (67.16%), Postives = 108/134 (80.60%), Query Frame = 0
Query:   41 RREFLSLVSGSVVCGSWV-----VGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            RR+FLSL + S +    +         AA DEEY+K+T  VI KVR+T++M+K DPNVA AVAELRE+SNSWVAKYR+EKALLG+ASFRD+YSALNAVSGHY+SFG TAPIP KR+ RILEE++TAEKAL RGR
Sbjct:   41 RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174          
BLAST of Cc_v2.0_23976.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8DG60|PSB27_THEVB (Photosystem II assembly factor lipoprotein Psb27 OS=Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1) OX=197221 GN=psb27 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.282e-14
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 0
Query:   69 YVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLR 167
            + ++T  +I  +R  I + +NDPN  +A AE R+  N + A YRR+ +L   +SF  M +ALN+++GHY S+    P+P K + R+ +E    E AL R
Sbjct:   33 FREDTLALISSLREAIALPENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSY-PNRPLPEKLKARLEQEFKQVELALDR 130          
BLAST of Cc_v2.0_23976.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P74367|PSB27_SYNY3 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psb27 PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.225e-12
Identity = 35/100 (35.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   69 YVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRG 168
            Y ++T  VI  +R  I + ++ PN        R   N ++++YRR+    G  SF  M +ALN+++G+Y S+GA  PIP K + R+  E   AE+++ RG
Sbjct:   35 YSQDTLTVIATLREAIDLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGAR-PIPEKLKKRLQLEFTQAERSIERG 133          
BLAST of Cc_v2.0_23976.1 vs. Araport11
Match: | (Symbols: PSB27 | | chr1:898916-899440 FORWARD LENGTH=174)

HSP 1 Score: 186.808 bits (473), Expect = 6.878e-61
Identity = 90/134 (67.16%), Postives = 108/134 (80.60%), Query Frame = 0
Query:   41 RREFLSLVSGSVVCGSWV-----VGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAELRESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKRRNRILEEVDTAEKALLRGR 169
            RR+FLSL + S +    +         AA DEEY+K+T  VI KVR+T++M+K DPNVA AVAELRE+SNSWVAKYR+EKALLG+ASFRD+YSALNAVSGHY+SFG TAPIP KR+ RILEE++TAEKAL RGR
Sbjct:   41 RRDFLSLAATSTLLTQSIQFLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKEKALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174          
The following BLAST results are available for this feature:
BLAST of Cc_v2.0_23976.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A151SFC9|A0A151SFC9_CAJCA1.618e-118100.00Photosystem II repair protein PSB27-H1, chloroplas... [more]
tr|A0A4D6NAT9|A0A4D6NAT9_VIGUN3.963e-8576.02Photosystem II Psb27 protein OS=Vigna unguiculata ... [more]
tr|V7BV38|V7BV38_PHAVU7.726e-8577.06Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A0S3SHI7|A0A0S3SHI7_PHAAN1.051e-8477.19Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0L9UMC1|A0A0L9UMC1_PHAAN1.051e-8477.19Photosystem II repair protein OS=Phaseolus angular... [more]
tr|A0A1S3TD87|A0A1S3TD87_VIGRR6.916e-8376.02Photosystem II repair protein PSB27-H1, chloroplas... [more]
tr|A0AA86VYT8|A0AA86VYT8_9FABA1.794e-8276.61Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|A0A8B8KIS2|A0A8B8KIS2_ABRPR1.083e-8172.25Photosystem II repair protein PSB27-H1, chloroplas... [more]
tr|W9R838|W9R838_9ROSA3.230e-7870.06Photosystem II repair protein PSB27-H1 OS=Morus no... [more]
tr|A0A072VAN9|A0A072VAN9_MEDTR6.351e-7872.09Photosystem II Pbs27 protein OS=Medicago truncatul... [more]
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BLAST of Cc_v2.0_23976.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs UniProt Swissprot )
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q9LR64|PB27A_ARATH6.592e-6067.16Photosystem II repair protein PSB27-H1, chloroplas... [more]
sp|Q8DG60|PSB27_THEVB2.282e-1437.37Photosystem II assembly factor lipoprotein Psb27 O... [more]
sp|P74367|PSB27_SYNY31.225e-1235.00Photosystem II lipoprotein Psb27 OS=Synechocystis ... [more]
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BLAST of Cc_v2.0_23976.1 vs. Araport11
Analysis Date: 2024-07-30 (Blastp of Cajanus cajan cv. Asha v2.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|6.878e-6167.16Symbols: PSB27 | | chr1:898916-899440 FORWARD LEN... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cajanus cajan cv. Asha genome v2.0
Date Performed: 2024-07-30
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableFUNFAMG3DSA:1.20.58.810:FF:000001coord: 64..169
e-value: 1.6E-53
score: 181.2
IPR038450Photosystem II Psb27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 64..169
e-value: 5.9E-39
score: 134.8
IPR025585Photosystem II Psb27PFAMPF13326PSII_Pbs27coord: 42..165
e-value: 5.0E-30
score: 116.1
IPR025585Photosystem II Psb27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 28..165
IPR025585Photosystem II Psb27HAMAPMF_01481PSII_Psb27coord: 42..165
score: 23.475986

Sequences
The following sequences are available for this feature:

mRNA sequence

>drCajCajn.Asha.2.0.Cc_v2.0_23976.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; Name=Cc_v2.0_23976.1; organism=Cajanus cajan; type=mRNA; length=510bp
aTGGCCTCTCCAACACTAATAACCCCAACATCCACACCCAAATCACTCAC
ACCCATGAAGCCCAAAACCACCAGCATCGCCGCCAGAGGCAGAAGCAGCA
CCACCATGAGCCAGCCTGGACGGCGCGAGTTCCTCTCCTTGGTGAGTGGG
TCCGTCGTGTGTGGGTCATGGGTGGTTGGGGCAGTGGCGGCGTCGGACGA
AGAGTACGTGAAGGAGACGGAGGAGGTGATCGGGAAGGTGAGAACGACCA
TAACGATGGAGAAGAATGACCCGAACGTGGCCTCTGCGGTTGCGGAGCTG
AGAGAAAGCTCGAACTCGTGGGTGGCCAAGTACCGGAGGGAGAAAGCGCT
TCTGGGAAGGGCTTCCTTCAGAGACATGTATTCGGCTCTGAACGCTGTTT
CCGGACACTACATTAGTTTCGGAGCCACCGCTCCTATTCCTGTCAAACGA
AGGAACAGGATTTTGGAGGAGGTGGACACTGCCGAGAAGGCGCTTCTAAG
GGGAAGATAG
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protein sequence of drCajCajn.Asha.2.0.Cc_v2.0_23976.1

>drCajCajn.Asha.2.0.Cc_v2.0_23976.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; Name=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; organism=Cajanus cajan; type=polypeptide; length=169bp
MASPTLITPTSTPKSLTPMKPKTTSIAARGRSSTTMSQPGRREFLSLVSG
SVVCGSWVVGAVAASDEEYVKETEEVIGKVRTTITMEKNDPNVASAVAEL
RESSNSWVAKYRREKALLGRASFRDMYSALNAVSGHYISFGATAPIPVKR
RNRILEEVDTAEKALLRGR
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mRNA from alignment at CcLG10_v2.0:9702247..9703722+

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCajCajn.Asha.2.0.Cc_v2.0_23976.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; Name=Cc_v2.0_23976.1; organism=Cajanus cajan; type=mRNA; length=1476bp; location=Sequence derived from: CcLG10_v2.0:9702247..9703722+ (Cajanus cajan
AGGCTATGTGTTGGGCCTCGGTGACAGTAGAATAGACGGAGGATTTGGAG ATGGAATTGTAGGAGGCCACGTGAGGAGGTGGATCTGAAGGTGAGAAACC ATTGGCTGCTTTCTGATCCGAAGATAAGAGGATAAGGCCACGTGGCAAAA ACCCAGTGGCTCCTAAACACAAAAACACCACCTTGTTTTCCCTTGGTTGT TCTTGTTCccaacaccaacaccaacaccaacaccaacaccaacaccaTGG CCTCTCCAACACTAATAACCCCAACATCCACACCCAAATCACTCACACCC ATGAAGCCCAAAACCACCAGCATCGCCGCCAGAGGCAGAAGCAGCACCAC CATGAGCCAGCCTGGACGGCGCGAGTTCCTCTCCTTGGTGAGTGGGTCCG TCGTGTGTGGGTCATGGGTGGTTGGGGCAGTGGCGGCGTCGGACGAAGAG TACGTGAAGGAGACGGAGGAGGTGATCGGGAAGGTGAGAACGACCATAAC GATGGAGAAGAATGACCCGAACGTGGCCTCTGCGGTTGCGGAGCTGAGAG AAAGCTCGAACTCGTGGGTGGCCAAGTACCGGAGGGAGAAAGCGCTTCTG GGAAGGGCTTCCTTCAGAGACATGTATTCGGCTCTGAACGCTGTTTCCGG ACACTACATTAGTTTCGGAGCCACCGCTCCTATTCCTGTCAAACGAAGGA ACAGGATTTTGGAGGAGGTGGACACTGCCGAGAAGGCGCTTCTAAGGGGA AGATAGATTTCCTAACTTAATTGCCTTTTTCTATGTGCACTCATATCATA GAGTCAAACTAAATCCAGGCATCATTCTCTTTTCCTTTTCCTTTTAATTC AACTGCCTGCATGCGCCTTTTAATTCTCTTTTGTTGAACCCGTAATTACC ATTAGACAATAAGCCCATGCCCATGGTCATTTTGGATCAAGACTAAACAA CTTGTCACTTACGTGTTAGGCCACACTAATCACAAAACCAGTAGTGTCAA CATAACAAGTCATCATACAATCACCTATATTTTCACACTAATTTATTATG TTCTATAAGATTATATTTAAGACCATAATTTTCAAGAAAAAATAAGATAC AAATGAAtttgtttgaattcaagtttttttagtttgattactttttttat gtatgtaatttcataattatttttcctgttaattttatattttattttat tttattttaattATtcgagatcttatacatataagtaagattcaatcttt atcttataagatagttgtgtgaggttgagttagacttttaactcattttt ttaatatggtatcaaaacatattgtagtctatcataaccattttTCTAAT GTAAAGTTTGGTAAAACCTCATTCATATGATGTctatctcatttagggtg gtaaccttctgagcaggtcaggtaatttttatcatcccaaaaacatatat ttattCATAAACTTGttttttttttt
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Coding sequence (CDS) from alignment at CcLG10_v2.0:9702247..9703722+

>drCajCajn.Asha.2.0.Cc_v2.0_23976.1 ID=drCajCajn.Asha.2.0.Cc_v2.0_23976.1; Name=Cc_v2.0_23976.1; organism=Cajanus cajan; type=CDS; length=510bp; location=Sequence derived from: CcLG10_v2.0:9702247..9703722+ (Cajanus cajan
aTGGCCTCTCCAACACTAATAACCCCAACATCCACACCCAAATCACTCAC
ACCCATGAAGCCCAAAACCACCAGCATCGCCGCCAGAGGCAGAAGCAGCA
CCACCATGAGCCAGCCTGGACGGCGCGAGTTCCTCTCCTTGGTGAGTGGG
TCCGTCGTGTGTGGGTCATGGGTGGTTGGGGCAGTGGCGGCGTCGGACGA
AGAGTACGTGAAGGAGACGGAGGAGGTGATCGGGAAGGTGAGAACGACCA
TAACGATGGAGAAGAATGACCCGAACGTGGCCTCTGCGGTTGCGGAGCTG
AGAGAAAGCTCGAACTCGTGGGTGGCCAAGTACCGGAGGGAGAAAGCGCT
TCTGGGAAGGGCTTCCTTCAGAGACATGTATTCGGCTCTGAACGCTGTTT
CCGGACACTACATTAGTTTCGGAGCCACCGCTCCTATTCCTGTCAAACGA
AGGAACAGGATTTTGGAGGAGGTGGACACTGCCGAGAAGGCGCTTCTAAG
GGGAAGATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR038450PSII_Psb27_sf
IPR025585PSII_Psb27
Vocabulary: Biological Process
TermDefinition
GO:0010207photosystem II assembly
GO:0010206photosystem II repair
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II