Va09G048410.1

Transcript Overview
NameVa09G048410.1
Unique NameVa09G048410.1_Jingnong6
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length492
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr9chromosomeChr9:27683286..27684653 -Vigna angularis cv. Jingnong6 genome v1.7.1n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Va09G048410Va09G048410_Jingnong6Vigna angularisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va09G048410.1:exon_1_Jingnong6Va09G048410.1:exon_1_Jingnong6Vigna angularisexon
Va09G048410.1:exon_2_Jingnong6Va09G048410.1:exon_2_Jingnong6Vigna angularisexon
Va09G048410.1:exon_3_Jingnong6Va09G048410.1:exon_3_Jingnong6Vigna angularisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Va09G048410.1_Jingnong6-cdsVa09G048410.1_Jingnong6-cds-Chr9_Jingnong6:27683286..27683630Vigna angularisCDS
Va09G048410.1_Jingnong6-cdsVa09G048410.1_Jingnong6-cds-Chr9_Jingnong6:27683916..27683953Vigna angularisCDS
Va09G048410.1_Jingnong6-cdsVa09G048410.1_Jingnong6-cds-Chr9_Jingnong6:27684545..27684653Vigna angularisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Va09G048410.1_Jingnong6Va09G048410.1_Jingnong6Vigna angularispolypeptide
Va09G048410.1_Jingnong6Va09G048410.1_Jingnong6-proteinVigna angularispolypeptide


Homology
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BLAST of Va09G048410.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9VDS5|A0A0L9VDS5_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g172600 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.155e-16
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0 
Query:    5 SRIGRPRTGRSPKSWTFAQGLDVRPTIGRPPNGFDVRPRAGRPPRGVWSSAKYGRTPVQLGAESEGPSARSGVRPPARERGASV 88
            +++ RP +   P  WTFAQGLDVRP IGRPP    VRPRAGRPPRG  ++ + GRTP +LGAES+G SAR G RP +  + ASV
Sbjct:   45 AKVERPPSEERPPMWTFAQGLDVRPRIGRPPKQRIVRPRAGRPPRG-GAALRRGRTPARLGAESKGSSARRGGRPSSLVQRASV 127
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BLAST of Va09G048410.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9U999|A0A0L9U999_PHAAN (mannan endo-1,4-beta-mannosidase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g267800 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.393e-10
Identity = 42/66 (63.64%), Postives = 44/66 (66.67%), Query Frame = 0 
Query:   76 GVRPPARERGASVWSRRTSARFGARSSDRPSLCR-PASAASFGSWDSAGRPLGPCIFVVRSSVFNS 140
            G RPP  E  ASVWSRRTSARFGA SSDRPSLCR P   AS         P GPCIFVV  SVF++
Sbjct:   46 GGRPPGLEHRASVWSRRTSARFGAWSSDRPSLCRPPVQLASVRGIQQC--PPGPCIFVVCPSVFDT 109
The following BLAST results are available for this feature:
BLAST of Va09G048410.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
tr|A0A0L9VDS5|A0A0L9VDS5_PHAAN3.155e-1658.33Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A0L9U999|A0A0L9U999_PHAAN3.393e-1063.64mannan endo-1,4-beta-mannosidase OS=Phaseolus angu... [more]
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BLAST of Va09G048410.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Va09G048410.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-05-23 (Blastp of Vigna angularis cv. Jingnong6 v1.7.1 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Va09G048410.1_Jingnong6 ID=Va09G048410.1_Jingnong6; Name=Va09G048410.1; organism=Vigna angularis; type=mRNA; length=492bp
ATGCATGTTCGCTCAAGGATTGGACGTCCAAGGACTGGACGTTCGCCCAA
GAGCTGGACGTTCGCCCAAGGATTGGACGTCCGCCCAACGATTGGACGTC
CGCCCAACGGATTTGACGTCCGCCCAAGAGCTGGACGCCCACCTAGGGGA
GTGTGGAGCAGCGCTAAGTACGGAAGGACGCCCGTCCAGCTTGGAGCAGA
GAGCGAAGGACCATCCGCCAGGAGTGGAGTACGTCCGCCCGCTAGGGAGC
GTGGAGCGAGCGTCTGGAGTAGGAGGACGTCCGCCCGGTTTGGAGCGAGG
AGCAGCGATCGTCCATCTTTGTGCCGCCCCGCCAGTGCCGCTTCCTTCGG
TTCGTGGGATTCAGCAGGACGTCCGCTCGGTCCGTGCATCTTCGTCGTCC
GCTCGTCCGTCTTCAACAGTAAGTTAGTGTGTTTTAACAGGGTTCGCCCG
GATCCAGTCGAAACATTTGGCGCCCACCGTGGGGCCGTGTGA
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protein sequence of Va09G048410.1_Jingnong6

>Va09G048410.1_Jingnong6 ID=Va09G048410.1_Jingnong6; Name=Va09G048410.1_Jingnong6; organism=Vigna angularis; type=polypeptide; length=163bp
MHVRSRIGRPRTGRSPKSWTFAQGLDVRPTIGRPPNGFDVRPRAGRPPRG
VWSSAKYGRTPVQLGAESEGPSARSGVRPPARERGASVWSRRTSARFGAR
SSDRPSLCRPASAASFGSWDSAGRPLGPCIFVVRSSVFNSKLVCFNRVRP
DPVETFGAHRGAV
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mRNA from alignment at Chr9:27683286..27684653-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Va09G048410.1_Jingnong6 ID=Va09G048410.1_Jingnong6; Name=Va09G048410.1; organism=Vigna angularis; type=mRNA; length=1368bp; location=Sequence derived from: Chr9:27683286..27684653- (Vigna angularis
ATGCATGTTCGCTCAAGGATTGGACGTCCAAGGACTGGACGTTCGCCCAA
GAGCTGGACGTTCGCCCAAGGATTGGACGTCCGCCCAACGATTGGACGTC
CGCCCAACGATTGGACGTCCGCCCAAGAGCTGGACGTCCGCCCAAGGAGT
GGACGTTCGCCCAAGAGCTGGACGTCCGCCCAAAATGGGACGTCCGCCCT
GTTAGAAGTGGACTTTAAGCCTAACTCAACCCCATAAAACCGGCTTATAT
GGTGAGGTTTGCACCCACTTATAAACTATGAATTGGCTTTATCTCTAGTC
GATGTGAGACTTCCAACACACCCTCCTCACGCCGAGGTATATACATCTCG
AGCGTGGGATTAGACAATGGGTGGTCCGATAGCGGCCCGATAGCGGGTGG
AACAATATGCCCAGCAAACAACAATATCGCTAGGATAGACTCTAACCATG
GCTCTGATACCATGTTAGAAGTGGACTTTAAGCCTAACTCAACCCCATAA
AACCGGCTTATATGGTGAGGTTTGCACCCACTTATAAACTATGAATTGGC
TTTATCTCTAGTCGATGTGAGACTTCCAACACGCCCAAAATGGGACGTTC
GCCCAAGATGGGACGTTCGCCCAAGATAAGACGTTCGCCCAAGAGCTGGA
CGTTCGCCCAAGGATTGGACGTCCGCCCAACGATTGGACGTCCGCCCAAG
GATTTGACGTCCGCCCAAGAGCTGGACGCCCACCTAGGGTAACATCCCTG
ACCGACCATCATCCCCAACCGACGCACTTTGCTGATTACACGGTTAAATG
CTAATGACACGTTAAAGTCCTAAATAAAGATTAAGGTATTATTGGGCCGT
TTCCAGGCCCCCAAAAGGTAAAAGCCCATTACAATTCACTATAAATAAAG
GTCTCAGGTATGAACTCTGGACCAACTTGAATAACGATGCATACACGCAT
CACAATCGCTCTGTCATATTACTGACTTGAGCGTCGGAGTGCCTTTAGCA
GGTACCCGGCCCCTCCCCAACTGGGAGTGTGGAGCAGCGCTAAGTACGGA
AGGACGCCCGTCCAGCTTGGAGCAGAGAGCGAAGGACCATCCGCCAGGAG
TGGAGTACGTCCGCCCGCTAGGGAGCGTGGAGCGAGCGTCTGGAGTAGGA
GGACGTCCGCCCGGTTTGGAGCGAGGAGCAGCGATCGTCCATCTTTGTGC
CGCCCCGCCAGTGCCGCTTCCTTCGGTTCGTGGGATTCAGCAGGACGTCC
GCTCGGTCCGTGCATCTTCGTCGTCCGCTCGTCCGTCTTCAACAGTAAGT
TAGTGTGTTTTAACAGGGTTCGCCCGGATCCAGTCGAAACATTTGGCGCC
CACCGTGGGGCCGTGTGA
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Coding sequence (CDS) from alignment at Chr9:27683286..27684653-

>Va09G048410.1_Jingnong6 ID=Va09G048410.1_Jingnong6; Name=Va09G048410.1; organism=Vigna angularis; type=CDS; length=492bp; location=Sequence derived from: Chr9:27683286..27684653- (Vigna angularis
ATGCATGTTCGCTCAAGGATTGGACGTCCAAGGACTGGACGTTCGCCCAA
GAGCTGGACGTTCGCCCAAGGATTGGACGTCCGCCCAACGATTGGACGTC
CGCCCAACGGATTTGACGTCCGCCCAAGAGCTGGACGCCCACCTAGGGGA
GTGTGGAGCAGCGCTAAGTACGGAAGGACGCCCGTCCAGCTTGGAGCAGA
GAGCGAAGGACCATCCGCCAGGAGTGGAGTACGTCCGCCCGCTAGGGAGC
GTGGAGCGAGCGTCTGGAGTAGGAGGACGTCCGCCCGGTTTGGAGCGAGG
AGCAGCGATCGTCCATCTTTGTGCCGCCCCGCCAGTGCCGCTTCCTTCGG
TTCGTGGGATTCAGCAGGACGTCCGCTCGGTCCGTGCATCTTCGTCGTCC
GCTCGTCCGTCTTCAACAGTAAGTTAGTGTGTTTTAACAGGGTTCGCCCG
GATCCAGTCGAAACATTTGGCGCCCACCGTGGGGCCGTGTGA
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