Vfaba.Hedin2.R1.1g052400.1

Transcript Overview
NameVfaba.Hedin2.R1.1g052400.1
Unique NameVfaba.Hedin2.R1.1g052400.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length321
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Schromosomechr1S:339931355..339931675 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhvfhR102Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL071Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL387Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.1g035080.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g052400Vfaba.Hedin2.R1.1g052400_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g052400.1_vfh_v1-exonVfaba.Hedin2.R1.1g052400.1_vfh_v1-exon-chr1S_vfh_v1:339931355..339931675Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g052400.1_vfh_v1-cdsVfaba.Hedin2.R1.1g052400.1_vfh_v1-cds-chr1S_vfh_v1:339931355..339931675Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g052400.1_vfh_v1Vfaba.Hedin2.R1.1g052400.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.1g052400.1_vfh_v1Vfaba.Hedin2.R1.1g052400.1_vfh_v1-proteinVicia fabapolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g052400.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.1g052400.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.1g052400.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..78

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.1g052400.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g052400.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g052400.1; organism=Vicia faba; type=mRNA; length=321bp
ATGCTCTACAACTCATCGTTTTCCCTTCTCCACTTTCACAACTCACTGTT
TTCAACCGATTCTTCATCATCTTCACCGTCATTTTTCGGTAACCCTAAGC
CGGACAAGAAGAAGCTCGGAGGAAACACCATTGATTCACCACCGCCAGCC
ATTGATTCTCCCTCGACAGGCATCAATTCTCCATTGTTTCACCGGAAAGA
AAGAACGAACCCAACAACGCACTCTTCTCCATTCGTCGGCCTAGAACTCA
CGTACTCTTTACCACGATTCAGCGATTCACCACCGGAAAGAGGAAACTAT
CTGAGATCGTACCAGAGTTAA
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protein sequence of Vfaba.Hedin2.R1.1g052400.1_vfh_v1

>Vfaba.Hedin2.R1.1g052400.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g052400.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g052400.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=106bp
MLYNSSFSLLHFHNSLFSTDSSSSSPSFFGNPKPDKKKLGGNTIDSPPPA
IDSPSTGINSPLFHRKERTNPTTHSSPFVGLELTYSLPRFSDSPPERGNY
LRSYQS
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mRNA from alignment at chr1S:339931355..339931675-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.1g052400.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g052400.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g052400.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:339931355..339931675- (Vicia faba
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