Vfaba.Hedin2.R1.1g053280.1

Transcript Overview
NameVfaba.Hedin2.R1.1g053280.1
Unique NameVfaba.Hedin2.R1.1g053280.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length477
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Schromosomechr1S:342129214..342129690 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhvfhR102Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL071Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvfhL387Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Tiffany.R1.1g035720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g053280Vfaba.Hedin2.R1.1g053280_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g053280.1_vfh_v1-exonVfaba.Hedin2.R1.1g053280.1_vfh_v1-exon-chr1S_vfh_v1:342129214..342129690Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g053280.1_vfh_v1-cdsVfaba.Hedin2.R1.1g053280.1_vfh_v1-cds-chr1S_vfh_v1:342129214..342129690Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g053280.1_vfh_v1Vfaba.Hedin2.R1.1g053280.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.1g053280.1_vfh_v1Vfaba.Hedin2.R1.1g053280.1_vfh_v1-proteinVicia fabapolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g053280.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.1g053280.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.1g053280.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.1g053280.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g053280.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g053280.1; organism=Vicia faba; type=mRNA; length=477bp
ATGTATTCTTCTCTACCTCTAAATGCATTGATTCGAGATCGTCATCGATT
CTTCTTCATCACTACAACATCGCTCCAATATTCGATCATCAACCTCACAA
TTTCGTCATCAATCTTGGCATCTCATCATCTTCTACAAAAGTGTTGTTAC
ATCATCAATATCATCTTCTACAAAAGTGTTGTTACATCATCAATATCATC
TTCAATTGCAAATCGTTGCTCTAACATGCAACAACGGAGTCAGCATTGTC
ATCACATAATGATTCGTGATAGAACACAAAATGAGGAGAAGATGATTCTG
TACCGAATTTTCATTGCAGATCTTTTTCTAGTTCCCTCTCAGCATCTTCG
ATTGAAGGCGCGTCAGAACATTTTCCGGCAGGTAATCCTCAGTACTCTTT
TATTTTATCGTATATCTATTTATGTGAATCGAAGCCGAAGAGAGGAGGCA
GAATACAAATCATTCACGGAGGATTGA
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protein sequence of Vfaba.Hedin2.R1.1g053280.1_vfh_v1

>Vfaba.Hedin2.R1.1g053280.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g053280.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g053280.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=158bp
MYSSLPLNALIRDRHRFFFITTTSLQYSIINLTISSSILASHHLLQKCCY
IINIIFYKSVVTSSISSSIANRCSNMQQRSQHCHHIMIRDRTQNEEKMIL
YRIFIADLFLVPSQHLRLKARQNIFRQVILSTLLFYRISIYVNRSRREEA
EYKSFTED
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mRNA from alignment at chr1S:342129214..342129690+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.1g053280.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g053280.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g053280.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:342129214..342129690+ (Vicia faba
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