Vfaba.Hedin2.R1.1g060120.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DWV1|A0A1S3DWV1_CICAR (uncharacterized protein LOC101506735 OS=Cicer arietinum OX=3827 GN=LOC101506735 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.285e-30 Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 0 Query: 12 ITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEV 111 I+P KESW++VV+V+RLWF+S++N K K+Y ME GD IQA V+K L+ RF+ REG+VYNF+ GVA+N+G YRT +HQFKLN QN T+V E+ Sbjct: 2 ISPKKESWNLVVKVVRLWFLSDLNVKHKFYAMET------GDKIQAIVRKALIPRFETTNREGVVYNFRPLGVASNSGAYRTTEHQFKLNFQNSTIVQEL 95
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P628|A0A2Z6P628_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_412120 PE=4 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 8.167e-27 Identity = 51/108 (47.22%), Postives = 77/108 (71.30%), Query Frame = 0 Query: 7 DYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVGAD 114 D + + KESW+++V+V+RLW+V N+ S + + MEMV++ + GD I A+V+++L+ +F+N ++EG +YNF FGVA N G YRT KHQ+KLN Q T V + GAD Sbjct: 6 DSIASVNSNKESWNLMVRVVRLWYVKNLGSNKLPFSMEMVMVDKNGDRIHATVRRSLIYKFENDMKEGEIYNFTNFGVATNIGEYRTTKHQYKLNFQYATKVKK-GAD 112
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P1U6|A0A2Z6P1U6_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_244550 PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 4.616e-26 Identity = 47/100 (47.00%), Postives = 71/100 (71.00%), Query Frame = 0 Query: 7 DYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPT 106 D ++EI+PAKE+W+++V+V+RLW+V +M + + MEMVLM KGD I A+V++ L+ +F+ ++E V+ FGVAAN G YRT +H +KLN Q T Sbjct: 6 DAISEISPAKENWNLIVRVVRLWYVKDMARDKLPFSMEMVLMDSKGDRIHATVRRTLIYKFEKDLKEDTVFAISNFGVAANIGSYRTTRHSYKLNFQFAT 105
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|G7IGJ6|G7IGJ6_MEDTR (Replication factor-A carboxy-terminal domain protein OS=Medicago truncatula OX=3880 GN=MTR_2g048560 PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.861e-24 Identity = 44/99 (44.44%), Postives = 71/99 (71.72%), Query Frame = 0 Query: 5 RCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQ 103 + D +++I+P+KE+W++ V+V+RLWFV +M Q Y +EMVLM KGD I ASV++ L+ +++ ++RE V++ F VA+N G YRT +H +K+N Q Sbjct: 4 KIDLISDISPSKENWNIRVRVVRLWFVRDMKKDQLPYSLEMVLMDNKGDRINASVRRTLIYKYEKELREDRVFSIGNFSVASNVGSYRTARHPYKINFQ 102
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|V7CUW3|V7CUW3_PHAVU (DUF223 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G109800g PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.059e-23 Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 0 Query: 9 VTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVGAD 114 + +I P E+W ++ +VIRLWFVS+ + + MEMV+ ++GD I SV+K L+ +F N I E VY+F +F VA N+G YRT +H++K+N Q T V+ VG D Sbjct: 11 IKDINPESENWILIARVIRLWFVSDFKKNKFPFSMEMVIQDKEGDRIHVSVRKTLIYKFQNHIFEDKVYSFNFFSVATNSGSYRTTRHKYKINFQFGTKVSCVGND 116
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|I3S7S2|I3S7S2_LOTJA (DUF223 domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-22 Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 0 Query: 3 SVRCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVG 112 +++ D V+++ +K++W++V +V+RLW + + + + ME+VLM KG I ASV+K L+ RF + EG VY YFGV N G +RT HQFK+N T V E+G Sbjct: 2 AIKVDDVSDVNNSKDTWNIVTKVVRLWVSPSFSGGKLPFSMELVLMDSKGCQIHASVRKTLVYRFHPLLTEGRVYQISYFGVGDNLGDFRTTTHQFKINFHIHTKVKEIG 111
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VS04|A0A072VS04_MEDTR (Animal RPA1 domain protein OS=Medicago truncatula OX=3880 GN=MTR_1g036740 PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.806e-22 Identity = 39/100 (39.00%), Postives = 70/100 (70.00%), Query Frame = 0 Query: 3 SVRCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNL 102 S + D+++ ++P K+SW +VV+V+R WF + +K+ + ME+VLM KGD I AS+++ L+ +F +++EG+V+ F VA+N+G YR ++++KLN Sbjct: 2 STKHDFISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNF 101
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|V7AQU0|V7AQU0_PHAVU (DUF223 domain-containing protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G0596000g PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 8.181e-22 Identity = 43/102 (42.16%), Postives = 70/102 (68.63%), Query Frame = 0 Query: 8 YVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVT 109 ++ ++ +KE+W+VVV+V+RLW V + ++ + +EMVL E+G I ASV++ L+ +F N+I E VY+ + F VA+N G YRT KH++K+N Q T V+ Sbjct: 6 FLNDVNLSKETWNVVVRVLRLWCVQDFTKQKIPFSLEMVLQDEEGVRIHASVRRTLIYKFQNQICEDRVYSIQSFTVASNLGSYRTTKHEYKINFQYGTKVS 107
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072UFS9|A0A072UFS9_MEDTR (Animal RPA1 domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g117425 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.114e-21 Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 0 Query: 5 RCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVGAD 114 R D ++EI+P KESW +VV+++ WFV ++N + ++M G+ I A+V++ L+ +F+ ++EG VY+ FGVAAN G YRT KH++KLN Q T V G + Sbjct: 4 RSDNISEISPVKESWSIVVRIVCAWFVRDVNRDAHPFSLDM------GNKIHATVRRTLIYKFEKDLQEGKVYSMSCFGVAANLGSYRTTKHEYKLNFQFNTKVKLCGKN 107
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A484LTC2|A0A484LTC2_9ASTE (DUF223 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS21012 PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.536e-21 Identity = 41/106 (38.68%), Postives = 70/106 (66.04%), Query Frame = 0 Query: 9 VTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVGAD 114 +++ITP+ E W ++V+V+RL+ + N ++ +EMV M E G + A+V+++L+ F+ +I+EG VY F YFG+ ++G YRT +H+F+LN Q T VT + Sbjct: 6 LSKITPSSECWRIMVRVVRLYTLPAYNDERTTNSIEMVFMDEHGTTMHATVRRSLVGTFEKRIKEGYVYVFAYFGIGISSGNYRTSRHEFRLNFQPRTTVTACSCE 111
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. Araport11
Match: AT2G05642.1 (| Nucleic acid-binding%2C OB-fold-like protein | Chr2:2098253-2100867 REVERSE LENGTH=532 | 201606) HSP 1 Score: 62.3882 bits (150), Expect = 2.088e-12 Identity = 33/102 (32.35%), Postives = 55/102 (53.92%), Query Frame = 0 Query: 11 EITPAKE------SWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPT 106 EITP + + V V++ RLW + + ++++L+ +KG+ IQAS++ LLS+F K+ EG Y F ++ N G YR H +K+N + T Sbjct: 4 EITPVSQLHSHLSTCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCYMIMNFEISDNGGSYRASSHPYKINFMSMT 105 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g060120.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g060120.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g060120.1; organism=Vicia faba; type=mRNA; length=345bpback to top protein sequence of Vfaba.Hedin2.R1.1g060120.1_vfh_v1 >Vfaba.Hedin2.R1.1g060120.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g060120.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g060120.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=114bpback to top mRNA from alignment at chr1S:386665356..386665785- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g060120.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g060120.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g060120.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:386665356..386665785- (Vicia fababack to top |