Vfaba.Hedin2.R1.1g060120.1

Transcript Overview
NameVfaba.Hedin2.R1.1g060120.1
Unique NameVfaba.Hedin2.R1.1g060120.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length345
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Schromosomechr1S:386665356..386665785 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vfhzwsR147Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vfhzwsR157Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cavfhL023Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL185Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavfhL483Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
pvvfhL007Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL144Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL481Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvfhL597Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvfhL414Pisum sativum Cameor genome v1aPisum sativum
psvfhL423Pisum sativum Cameor genome v1aPisum sativum
psvfhL685Pisum sativum Cameor genome v1aPisum sativum
vfhvfhR095Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvfhR105Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhL071Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuR114Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR119Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vfhvuR161Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvfhL391Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvssR123Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR102Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvuaR108Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR156Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvuaR150Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vfhvssR186Vicia sativa cv. Studenica genome v1.0Vicia sativa
vfhvvaR123Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR174Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvvaR185Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vfhvunR100Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR103Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vfhvunR143Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g060120Vfaba.Hedin2.R1.1g060120_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g060120.1_vfh_v1-exonVfaba.Hedin2.R1.1g060120.1_vfh_v1-exon-chr1S_vfh_v1:386665356..386665547Vicia fabaexon
Vfaba.Hedin2.R1.1g060120.1_vfh_v1-exonVfaba.Hedin2.R1.1g060120.1_vfh_v1-exon-chr1S_vfh_v1:386665633..386665785Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g060120.1_vfh_v1-cdsVfaba.Hedin2.R1.1g060120.1_vfh_v1-cds-chr1S_vfh_v1:386665356..386665547Vicia fabaCDS
Vfaba.Hedin2.R1.1g060120.1_vfh_v1-cdsVfaba.Hedin2.R1.1g060120.1_vfh_v1-cds-chr1S_vfh_v1:386665633..386665785Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g060120.1_vfh_v1Vfaba.Hedin2.R1.1g060120.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.1g060120.1_vfh_v1Vfaba.Hedin2.R1.1g060120.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DWV1|A0A1S3DWV1_CICAR (uncharacterized protein LOC101506735 OS=Cicer arietinum OX=3827 GN=LOC101506735 PE=4 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.285e-30
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 0
Query:   12 ITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEV 111
            I+P KESW++VV+V+RLWF+S++N K K+Y ME       GD IQA V+K L+ RF+   REG+VYNF+  GVA+N+G YRT +HQFKLN QN T+V E+
Sbjct:    2 ISPKKESWNLVVKVVRLWFLSDLNVKHKFYAMET------GDKIQAIVRKALIPRFETTNREGVVYNFRPLGVASNSGAYRTTEHQFKLNFQNSTIVQEL 95          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P628|A0A2Z6P628_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_412120 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.167e-27
Identity = 51/108 (47.22%), Postives = 77/108 (71.30%), Query Frame = 0
Query:    7 DYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVGAD 114
            D +  +   KESW+++V+V+RLW+V N+ S +  + MEMV++ + GD I A+V+++L+ +F+N ++EG +YNF  FGVA N G YRT KHQ+KLN Q  T V + GAD
Sbjct:    6 DSIASVNSNKESWNLMVRVVRLWYVKNLGSNKLPFSMEMVMVDKNGDRIHATVRRSLIYKFENDMKEGEIYNFTNFGVATNIGEYRTTKHQYKLNFQYATKVKK-GAD 112          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P1U6|A0A2Z6P1U6_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_244550 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.616e-26
Identity = 47/100 (47.00%), Postives = 71/100 (71.00%), Query Frame = 0
Query:    7 DYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPT 106
            D ++EI+PAKE+W+++V+V+RLW+V +M   +  + MEMVLM  KGD I A+V++ L+ +F+  ++E  V+    FGVAAN G YRT +H +KLN Q  T
Sbjct:    6 DAISEISPAKENWNLIVRVVRLWYVKDMARDKLPFSMEMVLMDSKGDRIHATVRRTLIYKFEKDLKEDTVFAISNFGVAANIGSYRTTRHSYKLNFQFAT 105          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|G7IGJ6|G7IGJ6_MEDTR (Replication factor-A carboxy-terminal domain protein OS=Medicago truncatula OX=3880 GN=MTR_2g048560 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.861e-24
Identity = 44/99 (44.44%), Postives = 71/99 (71.72%), Query Frame = 0
Query:    5 RCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQ 103
            + D +++I+P+KE+W++ V+V+RLWFV +M   Q  Y +EMVLM  KGD I ASV++ L+ +++ ++RE  V++   F VA+N G YRT +H +K+N Q
Sbjct:    4 KIDLISDISPSKENWNIRVRVVRLWFVRDMKKDQLPYSLEMVLMDNKGDRINASVRRTLIYKYEKELREDRVFSIGNFSVASNVGSYRTARHPYKINFQ 102          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|V7CUW3|V7CUW3_PHAVU (DUF223 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G109800g PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.059e-23
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 0
Query:    9 VTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVGAD 114
            + +I P  E+W ++ +VIRLWFVS+    +  + MEMV+  ++GD I  SV+K L+ +F N I E  VY+F +F VA N+G YRT +H++K+N Q  T V+ VG D
Sbjct:   11 IKDINPESENWILIARVIRLWFVSDFKKNKFPFSMEMVIQDKEGDRIHVSVRKTLIYKFQNHIFEDKVYSFNFFSVATNSGSYRTTRHKYKINFQFGTKVSCVGND 116          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|I3S7S2|I3S7S2_LOTJA (DUF223 domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-22
Identity = 45/110 (40.91%), Postives = 69/110 (62.73%), Query Frame = 0
Query:    3 SVRCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVG 112
            +++ D V+++  +K++W++V +V+RLW   + +  +  + ME+VLM  KG  I ASV+K L+ RF   + EG VY   YFGV  N G +RT  HQFK+N    T V E+G
Sbjct:    2 AIKVDDVSDVNNSKDTWNIVTKVVRLWVSPSFSGGKLPFSMELVLMDSKGCQIHASVRKTLVYRFHPLLTEGRVYQISYFGVGDNLGDFRTTTHQFKINFHIHTKVKEIG 111          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072VS04|A0A072VS04_MEDTR (Animal RPA1 domain protein OS=Medicago truncatula OX=3880 GN=MTR_1g036740 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.806e-22
Identity = 39/100 (39.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query:    3 SVRCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNL 102
            S + D+++ ++P K+SW +VV+V+R WF  +  +K+  + ME+VLM  KGD I AS+++ L+ +F  +++EG+V+    F VA+N+G YR  ++++KLN 
Sbjct:    2 STKHDFISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPFSMELVLMDRKGDRIGASIRRTLIYKFKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNF 101          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|V7AQU0|V7AQU0_PHAVU (DUF223 domain-containing protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G0596000g PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.181e-22
Identity = 43/102 (42.16%), Postives = 70/102 (68.63%), Query Frame = 0
Query:    8 YVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVT 109
            ++ ++  +KE+W+VVV+V+RLW V +   ++  + +EMVL  E+G  I ASV++ L+ +F N+I E  VY+ + F VA+N G YRT KH++K+N Q  T V+
Sbjct:    6 FLNDVNLSKETWNVVVRVLRLWCVQDFTKQKIPFSLEMVLQDEEGVRIHASVRRTLIYKFQNQICEDRVYSIQSFTVASNLGSYRTTKHEYKINFQYGTKVS 107          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072UFS9|A0A072UFS9_MEDTR (Animal RPA1 domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g117425 PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.114e-21
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 0
Query:    5 RCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVGAD 114
            R D ++EI+P KESW +VV+++  WFV ++N     + ++M      G+ I A+V++ L+ +F+  ++EG VY+   FGVAAN G YRT KH++KLN Q  T V   G +
Sbjct:    4 RSDNISEISPVKESWSIVVRIVCAWFVRDVNRDAHPFSLDM------GNKIHATVRRTLIYKFEKDLQEGKVYSMSCFGVAANLGSYRTTKHEYKLNFQFNTKVKLCGKN 107          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Match: tr|A0A484LTC2|A0A484LTC2_9ASTE (DUF223 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS21012 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.536e-21
Identity = 41/106 (38.68%), Postives = 70/106 (66.04%), Query Frame = 0
Query:    9 VTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPTVVTEVGAD 114
            +++ITP+ E W ++V+V+RL+ +   N ++    +EMV M E G  + A+V+++L+  F+ +I+EG VY F YFG+  ++G YRT +H+F+LN Q  T VT    +
Sbjct:    6 LSKITPSSECWRIMVRVVRLYTLPAYNDERTTNSIEMVFMDEHGTTMHATVRRSLVGTFEKRIKEGYVYVFAYFGIGISSGNYRTSRHEFRLNFQPRTTVTACSCE 111          
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. Araport11
Match: AT2G05642.1 (| Nucleic acid-binding%2C OB-fold-like protein | Chr2:2098253-2100867 REVERSE LENGTH=532 | 201606)

HSP 1 Score: 62.3882 bits (150), Expect = 2.088e-12
Identity = 33/102 (32.35%), Postives = 55/102 (53.92%), Query Frame = 0
Query:   11 EITPAKE------SWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGEKGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKLNLQNPT 106
            EITP  +      +  V V++ RLW     +  +    ++++L+ +KG+ IQAS++  LLS+F  K+ EG  Y    F ++ N G YR   H +K+N  + T
Sbjct:    4 EITPVSQLHSHLSTCKVKVRIARLWAYHKKDRPKDIMGIDLLLVDDKGERIQASIRSQLLSKFQEKLEEGDCYMIMNFEISDNGGSYRASSHPYKINFMSMT 105          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3DWV1|A0A1S3DWV1_CICAR3.285e-3056.00uncharacterized protein LOC101506735 OS=Cicer arie... [more]
tr|A0A2Z6P628|A0A2Z6P628_TRISU8.167e-2747.22Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A2Z6P1U6|A0A2Z6P1U6_TRISU4.616e-2647.00Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|G7IGJ6|G7IGJ6_MEDTR4.861e-2444.44Replication factor-A carboxy-terminal domain prote... [more]
tr|V7CUW3|V7CUW3_PHAVU3.059e-2344.34DUF223 domain-containing protein OS=Phaseolus vulg... [more]
tr|I3S7S2|I3S7S2_LOTJA2.297e-2240.91DUF223 domain-containing protein OS=Lotus japonicu... [more]
tr|A0A072VS04|A0A072VS04_MEDTR2.806e-2239.00Animal RPA1 domain protein OS=Medicago truncatula ... [more]
tr|V7AQU0|V7AQU0_PHAVU8.181e-2242.16DUF223 domain-containing protein (Fragment) OS=Pha... [more]
tr|A0A072UFS9|A0A072UFS9_MEDTR1.114e-2140.91Animal RPA1 domain protein OS=Medicago truncatula ... [more]
tr|A0A484LTC2|A0A484LTC2_9ASTE1.536e-2138.68DUF223 domain-containing protein OS=Cuscuta campes... [more]
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BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.1g060120.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G05642.12.088e-1232.35| Nucleic acid-binding%2C OB-fold-like protein | C... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003871Domain of unknown function DUF223PFAMPF02721DUF223coord: 44..110
e-value: 9.8E-11
score: 41.8
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 8..112
e-value: 3.5E-21
score: 77.4
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 8..110
NoneNo IPR availableCDDcd04480RPA1_DBD_A_likecoord: 21..108
e-value: 3.14959E-22
score: 81.5296

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.1g060120.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g060120.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g060120.1; organism=Vicia faba; type=mRNA; length=345bp
ATGGCCTCTGTAAGATGCGACTACGTTACTGAAATCACTCCTGCAAAGGA
ATCCTGGGATGTTGTTGTTCAAGTTATTCGCTTATGGTTTGTGTCAAACA
TGAATTCGAAGCAAAAATATTATGTGATGGAAATGGTTCTAATGGGTGAA
AAGGGTGACAACATTCAGGCTTCTGTTAAAAAAAATCTGCTGTCTCGGTT
TGATAATAAGATTCGTGAGGGTATTGTTTATAATTTTAAATATTTTGGTG
TGGCTGCTAATACTGGAGTGTATAGGACCATAAAACACCAGTTCAAGTTG
AATTTGCAGAATCCCACTGTGGTTACAGAAGTTGGTGCTGACTGA
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protein sequence of Vfaba.Hedin2.R1.1g060120.1_vfh_v1

>Vfaba.Hedin2.R1.1g060120.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g060120.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g060120.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=114bp
MASVRCDYVTEITPAKESWDVVVQVIRLWFVSNMNSKQKYYVMEMVLMGE
KGDNIQASVKKNLLSRFDNKIREGIVYNFKYFGVAANTGVYRTIKHQFKL
NLQNPTVVTEVGAD
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mRNA from alignment at chr1S:386665356..386665785-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.1g060120.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g060120.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g060120.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:386665356..386665785- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003871RPA1_DBD-A-like_plant
IPR012340NA-bd_OB-fold