Vfaba.Hedin2.R1.1g064480.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KF21|A0A2K3KF21_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g054226 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 5.713e-40 Identity = 68/152 (44.74%), Postives = 102/152 (67.11%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMNW 151 M+ YWLQ L LP V+ I +ICR+F W+GS + SRKAPIAW+TIC+PK GGLN++ L+ WN+ TL KLLWN+ K+D LW++W+ T Y K I++ + +++SWI+K I++H+D + W E +NA K + MY + ++ + W Sbjct: 35 MTNYWLQCLPLPKAVIQKINSICRTFFWTGSIEKSRKAPIAWKTICQPKRNGGLNLIDLEVWNRITLLKLLWNLSGKSDSLWVKWVHTYYIKNQQIMEACIXDNASWIMKAIMQHRDGIHQNLVWIEMLNASKISMKKMYMTVHDRAQSVVW 186
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LV24|A0A2K3LV24_TRIPR (Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g038409 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 2.434e-34 Identity = 66/143 (46.15%), Postives = 95/143 (66.43%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAI 142 ++ YW+Q L LP +V++ I+AICRSFLW+G + K+P+AW+ +C PK GGLN++ L++WN+A L KLLWNIH KAD LWIRW+ + Y K ++ V S SWILK I+K ++ + W+ GK TR +YK + Sbjct: 172 VANYWMQCLPLPKKVIHKIDAICRSFLWTGGAVVTSKSPVAWKHVCAPKAQGGLNLLSLEEWNRANLTKLLWNIHNKADSLWIRWIHSYYIKQDQLMTMPVNQSCSWILKTILKQRESIPYIQGWENM--KGKAITRTVYKLL 312
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|F4NCG1|F4NCG1_BETVV (Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 5.088e-33 Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSG-SDCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMNW 151 M YW + L +V+ +E +CR FLW+G ++ ++KAP+AW TI +PK GG NV+ ++ WN+A + KLLW I K D+LW+RW+ + Y K DIL ++N ++WIL+KIVK +D L N W E K+ + YK I E + W Sbjct: 806 MQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKARDHLSNIGDWDEICIGDKFSMKKAYKKISENGERVRW 957
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MUX9|A0A2K3MUX9_TRIPR (Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g017739 PE=4 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 5.516e-33 Identity = 62/152 (40.79%), Postives = 100/152 (65.79%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMNW 151 M+ YWLQ L P V+ I +IC +FLW+GS + SRKA +AW+++C+PK GGLN++ L+ WN+ TL KLLWN+ K+D LW +W+ Y K I++ +V +++SWI+K I++ ++ ++ W E N K+K + MY A+ ++ + W Sbjct: 387 MTNYWLQCLPFPKAVIKKINSICCTFLWTGSIEKSRKASVAWKSVCQPKRNGGLNIIDLEVWNRITLLKLLWNLSGKSDNLWKKWVHVYYIKNQHIMEARVPDNASWIMKAIMQQREDIRQNQVWIEIFNTPKFKMKKMYMAVHDRAQKVVW 538
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MY06|A0A2K3MY06_TRIPR (Zinc finger CCCH domain-containing protein 66-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g018874 PE=4 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.025e-32 Identity = 64/143 (44.76%), Postives = 96/143 (67.13%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAI 142 ++ YW+Q L LP +V++ I AICRSFLWSG +RK+ ++W+ +C PK GGLN++ L++WN+A + KLLWNI+ KAD LWIRW+ + Y K +++ V +SSWILK I++ +D L+ W GK TR +Y+ + Sbjct: 1108 VANYWMQCLPLPKKVIHKINAICRSFLWSGGAVITRKSLVSWDHVCAPKAKGGLNLISLEEWNRANMTKLLWNINNKADSLWIRWIHSYYIKQDNLMTMPVKQNSSWILKAILQQRDSLQQVQGWNNM--KGKIITRKVYQML 1248
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|F4NCG3|F4NCG3_BETVV (Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.786e-29 Identity = 58/152 (38.16%), Postives = 93/152 (61.18%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMNW 151 M YW Q+ LP +++ +E CR FLW+G+ D S KAP+AW+ + +PK GGLNV + WN+A + KLLW I K D+LW+RW++ Y K +I + V++++SWIL+KI + +++L W+ N + + YK + E++ W Sbjct: 809 MQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKIFESRELLTRTGGWEAVSNHMNFSIKKTYKLLQEDYENVVW 960
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3YCG6|A0A1S3YCG6_TOBAC (uncharacterized protein LOC107774796 isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107774796 PE=4 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 5.360e-29 Identity = 62/149 (41.61%), Postives = 90/149 (60.40%), Query Frame = 0 Query: 5 WLQVLSLPNQVMNHIEAICRSFLWSG-SDCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAV-NAGKYKTRIMYKAICGISEHMNW 151 W QV LP +V+ +E C++FLW+G SD S+KA IAWE +C+P+VAGGLN++ + WN +GKLLWN+ K D LW++W+ T Y KG I D + +SW+++KI K K M + ++ V Y + +Y I G M W Sbjct: 54 WSQVFVLPKKVIQLVETTCKTFLWTGGSDTSKKALIAWERLCQPRVAGGLNILDVYSWNHVAIGKLLWNVCRKKDNLWVKWIHTYYTKGGAIWDIKPAQ-ASWMVQKIFKAKLMFELAGITEDTVATMSIYSIKKIYGLIRGDYPKMPW 201
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1U7VVL0|A0A1U7VVL0_NICSY (uncharacterized protein LOC104219920 OS=Nicotiana sylvestris OX=4096 GN=LOC104219920 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.749e-29 Identity = 53/117 (45.30%), Postives = 78/117 (66.67%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKD 116 + YW Q+ +P ++M IE ICR+FLW+GS + S+K IAW+ IC+PK AGGLNV+ ++ WN+A + K LW + MK D +WIRW T Y K I D ++W+++KI++ KD Sbjct: 18 VQTYWAQIFLIPKKIMKMIETICRTFLWTGSSEFSKKTLIAWDRICQPKAAGGLNVINMKIWNKAAVLKYLWALAMKKDAMWIRWAYTYYIKNRHIKDIHTPKVAAWVVRKIIEAKD 134
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S4CIA2|A0A1S4CIA2_TOBAC (uncharacterized protein LOC107819345 OS=Nicotiana tabacum OX=4097 GN=LOC107819345 PE=4 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.134e-28 Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKD 116 + YW Q+ +P ++M IE ICR+FLW+GS + S+K IAW+ IC+PK AGGLNV+ L+ WN+A + K LW + MK D +WIRW T Y K I D ++W+++KI++ KD Sbjct: 76 VQTYWAQIFLIPKKIMKMIETICRTFLWTGSSEFSKKTLIAWDRICQPKAAGGLNVINLKIWNKAAVLKYLWALAMKKDAMWIRWAYTYYIKNRHIKDIHTPKVAAWVVRKIIEAKD 192
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6I9T9L4|A0A6I9T9L4_SESIN (uncharacterized protein LOC105164266 OS=Sesamum indicum OX=4182 GN=LOC105164266 PE=4 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.717e-28 Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKI 111 + +WLQV LP V+ I +CR+FLW+ SR+AP+AWE IC PK GGL + +Q WN A L ++LWNIH KAD LW++W++ +Y +G I DWQ S +L+++ Sbjct: 480 VECFWLQVFPLPAAVIEKIHRLCRNFLWN----SRRAPVAWEEICHPKEEGGLGIRHIQSWNVALLARVLWNIHRKADMLWVQWVNGVYLRGASIWDWQPKKGDSPLLQRL 586
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.3 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606) HSP 1 Score: 81.2629 bits (199), Expect = 1.677e-18 Identity = 40/121 (33.06%), Postives = 73/121 (60.33%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSS---SWILKKIVKHKDM 117 ++ +W+ LP+ + I++IC SFLWSG + ++KA +AW +C PK GGL + L++ N+ +L KL+W + + + LW++WL + W ++ ++ SW+ KKI+KH+ + Sbjct: 77 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSF--WSISGNTTLGSWMWKKILKHRAL 194
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.5 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606) HSP 1 Score: 81.2629 bits (199), Expect = 1.827e-18 Identity = 40/121 (33.06%), Postives = 73/121 (60.33%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSS---SWILKKIVKHKDM 117 ++ +W+ LP+ + I++IC SFLWSG + ++KA +AW +C PK GGL + L++ N+ +L KL+W + + + LW++WL + W ++ ++ SW+ KKI+KH+ + Sbjct: 131 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSF--WSISGNTTLGSWMWKKILKHRAL 248
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.4 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606) HSP 1 Score: 81.2629 bits (199), Expect = 1.827e-18 Identity = 40/121 (33.06%), Postives = 73/121 (60.33%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSS---SWILKKIVKHKDM 117 ++ +W+ LP+ + I++IC SFLWSG + ++KA +AW +C PK GGL + L++ N+ +L KL+W + + + LW++WL + W ++ ++ SW+ KKI+KH+ + Sbjct: 131 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSF--WSISGNTTLGSWMWKKILKHRAL 248
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.7 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606) HSP 1 Score: 80.8777 bits (198), Expect = 2.596e-18 Identity = 40/119 (33.61%), Postives = 72/119 (60.50%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSS---SWILKKIVKHK 115 ++ +W+ LP+ + I++IC SFLWSG + ++KA +AW +C PK GGL + L++ N+ +L KL+W + + + LW++WL + W ++ ++ SW+ KKI+KH+ Sbjct: 131 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSF--WSISGNTTLGSWMWKKILKHR 246
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.1 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606) HSP 1 Score: 63.1586 bits (152), Expect = 4.156e-12 Identity = 34/118 (28.81%), Postives = 57/118 (48.31%), Query Frame = 0 Query: 1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDM 117 ++ +W+ LP+ + I++IC SFLWSG + ++KA +AW +C PK GGL + L++ N+ + W+I T SW+ KKI+KH+ + Sbjct: 77 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGS----FWSISGN------------------------TTLGSWMWKKILKHRAL 166 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 5
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.1g064480.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g064480.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g064480.1; organism=Vicia faba; type=mRNA; length=456bpback to top protein sequence of Vfaba.Hedin2.R1.1g064480.1_vfh_v1 >Vfaba.Hedin2.R1.1g064480.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g064480.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g064480.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=151bpback to top mRNA from alignment at chr1S:417039276..417039731- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.1g064480.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g064480.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g064480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:417039276..417039731- (Vicia fababack to top |