Vfaba.Hedin2.R1.1g064480.1

Transcript Overview
NameVfaba.Hedin2.R1.1g064480.1
Unique NameVfaba.Hedin2.R1.1g064480.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length456
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Schromosomechr1S:417039276..417039731 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g064480Vfaba.Hedin2.R1.1g064480_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g064480.1_vfh_v1-exonVfaba.Hedin2.R1.1g064480.1_vfh_v1-exon-chr1S_vfh_v1:417039276..417039731Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g064480.1_vfh_v1-cdsVfaba.Hedin2.R1.1g064480.1_vfh_v1-cds-chr1S_vfh_v1:417039276..417039731Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.1g064480.1_vfh_v1Vfaba.Hedin2.R1.1g064480.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.1g064480.1_vfh_v1Vfaba.Hedin2.R1.1g064480.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KF21|A0A2K3KF21_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g054226 PE=4 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.713e-40
Identity = 68/152 (44.74%), Postives = 102/152 (67.11%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMNW 151
            M+ YWLQ L LP  V+  I +ICR+F W+GS + SRKAPIAW+TIC+PK  GGLN++ L+ WN+ TL KLLWN+  K+D LW++W+ T Y K   I++  + +++SWI+K I++H+D +     W E +NA K   + MY  +   ++ + W
Sbjct:   35 MTNYWLQCLPLPKAVIQKINSICRTFFWTGSIEKSRKAPIAWKTICQPKRNGGLNLIDLEVWNRITLLKLLWNLSGKSDSLWVKWVHTYYIKNQQIMEACIXDNASWIMKAIMQHRDGIHQNLVWIEMLNASKISMKKMYMTVHDRAQSVVW 186          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LV24|A0A2K3LV24_TRIPR (Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g038409 PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.434e-34
Identity = 66/143 (46.15%), Postives = 95/143 (66.43%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAI 142
            ++ YW+Q L LP +V++ I+AICRSFLW+G    + K+P+AW+ +C PK  GGLN++ L++WN+A L KLLWNIH KAD LWIRW+ + Y K   ++   V  S SWILK I+K ++ +     W+     GK  TR +YK +
Sbjct:  172 VANYWMQCLPLPKKVIHKIDAICRSFLWTGGAVVTSKSPVAWKHVCAPKAQGGLNLLSLEEWNRANLTKLLWNIHNKADSLWIRWIHSYYIKQDQLMTMPVNQSCSWILKTILKQRESIPYIQGWENM--KGKAITRTVYKLL 312          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|F4NCG1|F4NCG1_BETVV (Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.088e-33
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSG-SDCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMNW 151
            M  YW  +  L  +V+  +E +CR FLW+G ++ ++KAP+AW TI +PK  GG NV+ ++ WN+A + KLLW I  K D+LW+RW+ + Y K  DIL   ++N ++WIL+KIVK +D L N   W E     K+  +  YK I    E + W
Sbjct:  806 MQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKARDHLSNIGDWDEICIGDKFSMKKAYKKISENGERVRW 957          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MUX9|A0A2K3MUX9_TRIPR (Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g017739 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.516e-33
Identity = 62/152 (40.79%), Postives = 100/152 (65.79%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMNW 151
            M+ YWLQ L  P  V+  I +IC +FLW+GS + SRKA +AW+++C+PK  GGLN++ L+ WN+ TL KLLWN+  K+D LW +W+   Y K   I++ +V +++SWI+K I++ ++ ++    W E  N  K+K + MY A+   ++ + W
Sbjct:  387 MTNYWLQCLPFPKAVIKKINSICCTFLWTGSIEKSRKASVAWKSVCQPKRNGGLNIIDLEVWNRITLLKLLWNLSGKSDNLWKKWVHVYYIKNQHIMEARVPDNASWIMKAIMQQREDIRQNQVWIEIFNTPKFKMKKMYMAVHDRAQKVVW 538          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MY06|A0A2K3MY06_TRIPR (Zinc finger CCCH domain-containing protein 66-like (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g018874 PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.025e-32
Identity = 64/143 (44.76%), Postives = 96/143 (67.13%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAI 142
            ++ YW+Q L LP +V++ I AICRSFLWSG    +RK+ ++W+ +C PK  GGLN++ L++WN+A + KLLWNI+ KAD LWIRW+ + Y K  +++   V  +SSWILK I++ +D L+    W      GK  TR +Y+ +
Sbjct: 1108 VANYWMQCLPLPKKVIHKINAICRSFLWSGGAVITRKSLVSWDHVCAPKAKGGLNLISLEEWNRANMTKLLWNINNKADSLWIRWIHSYYIKQDNLMTMPVKQNSSWILKAILQQRDSLQQVQGWNNM--KGKIITRKVYQML 1248          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|F4NCG3|F4NCG3_BETVV (Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.786e-29
Identity = 58/152 (38.16%), Postives = 93/152 (61.18%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMNW 151
            M  YW Q+  LP +++  +E  CR FLW+G+ D S KAP+AW+ + +PK  GGLNV  +  WN+A + KLLW I  K D+LW+RW++  Y K  +I +  V++++SWIL+KI + +++L     W+   N   +  +  YK +    E++ W
Sbjct:  809 MQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKIFESRELLTRTGGWEAVSNHMNFSIKKTYKLLQEDYENVVW 960          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3YCG6|A0A1S3YCG6_TOBAC (uncharacterized protein LOC107774796 isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107774796 PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.360e-29
Identity = 62/149 (41.61%), Postives = 90/149 (60.40%), Query Frame = 0
Query:    5 WLQVLSLPNQVMNHIEAICRSFLWSG-SDCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDMLKNKAYWKEAV-NAGKYKTRIMYKAICGISEHMNW 151
            W QV  LP +V+  +E  C++FLW+G SD S+KA IAWE +C+P+VAGGLN++ +  WN   +GKLLWN+  K D LW++W+ T Y KG  I D +    +SW+++KI K K M +     ++ V     Y  + +Y  I G    M W
Sbjct:   54 WSQVFVLPKKVIQLVETTCKTFLWTGGSDTSKKALIAWERLCQPRVAGGLNILDVYSWNHVAIGKLLWNVCRKKDNLWVKWIHTYYTKGGAIWDIKPAQ-ASWMVQKIFKAKLMFELAGITEDTVATMSIYSIKKIYGLIRGDYPKMPW 201          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1U7VVL0|A0A1U7VVL0_NICSY (uncharacterized protein LOC104219920 OS=Nicotiana sylvestris OX=4096 GN=LOC104219920 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.749e-29
Identity = 53/117 (45.30%), Postives = 78/117 (66.67%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKD 116
            +  YW Q+  +P ++M  IE ICR+FLW+GS + S+K  IAW+ IC+PK AGGLNV+ ++ WN+A + K LW + MK D +WIRW  T Y K   I D      ++W+++KI++ KD
Sbjct:   18 VQTYWAQIFLIPKKIMKMIETICRTFLWTGSSEFSKKTLIAWDRICQPKAAGGLNVINMKIWNKAAVLKYLWALAMKKDAMWIRWAYTYYIKNRHIKDIHTPKVAAWVVRKIIEAKD 134          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S4CIA2|A0A1S4CIA2_TOBAC (uncharacterized protein LOC107819345 OS=Nicotiana tabacum OX=4097 GN=LOC107819345 PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.134e-28
Identity = 54/117 (46.15%), Postives = 78/117 (66.67%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGS-DCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKD 116
            +  YW Q+  +P ++M  IE ICR+FLW+GS + S+K  IAW+ IC+PK AGGLNV+ L+ WN+A + K LW + MK D +WIRW  T Y K   I D      ++W+++KI++ KD
Sbjct:   76 VQTYWAQIFLIPKKIMKMIETICRTFLWTGSSEFSKKTLIAWDRICQPKAAGGLNVINLKIWNKAAVLKYLWALAMKKDAMWIRWAYTYYIKNRHIKDIHTPKVAAWVVRKIIEAKD 192          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6I9T9L4|A0A6I9T9L4_SESIN (uncharacterized protein LOC105164266 OS=Sesamum indicum OX=4182 GN=LOC105164266 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.717e-28
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDCSRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKI 111
            +  +WLQV  LP  V+  I  +CR+FLW+    SR+AP+AWE IC PK  GGL +  +Q WN A L ++LWNIH KAD LW++W++ +Y +G  I DWQ     S +L+++
Sbjct:  480 VECFWLQVFPLPAAVIEKIHRLCRNFLWN----SRRAPVAWEEICHPKEEGGLGIRHIQSWNVALLARVLWNIHRKADMLWVQWVNGVYLRGASIWDWQPKKGDSPLLQRL 586          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.3 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606)

HSP 1 Score: 81.2629 bits (199), Expect = 1.677e-18
Identity = 40/121 (33.06%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSS---SWILKKIVKHKDM 117
            ++ +W+    LP+  +  I++IC SFLWSG +  ++KA +AW  +C PK  GGL +  L++ N+ +L KL+W + + +  LW++WL     +      W ++ ++   SW+ KKI+KH+ +
Sbjct:   77 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSF--WSISGNTTLGSWMWKKILKHRAL 194          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.5 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606)

HSP 1 Score: 81.2629 bits (199), Expect = 1.827e-18
Identity = 40/121 (33.06%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSS---SWILKKIVKHKDM 117
            ++ +W+    LP+  +  I++IC SFLWSG +  ++KA +AW  +C PK  GGL +  L++ N+ +L KL+W + + +  LW++WL     +      W ++ ++   SW+ KKI+KH+ +
Sbjct:  131 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSF--WSISGNTTLGSWMWKKILKHRAL 248          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.4 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606)

HSP 1 Score: 81.2629 bits (199), Expect = 1.827e-18
Identity = 40/121 (33.06%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSS---SWILKKIVKHKDM 117
            ++ +W+    LP+  +  I++IC SFLWSG +  ++KA +AW  +C PK  GGL +  L++ N+ +L KL+W + + +  LW++WL     +      W ++ ++   SW+ KKI+KH+ +
Sbjct:  131 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSF--WSISGNTTLGSWMWKKILKHRAL 248          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.7 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606)

HSP 1 Score: 80.8777 bits (198), Expect = 2.596e-18
Identity = 40/119 (33.61%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSS---SWILKKIVKHK 115
            ++ +W+    LP+  +  I++IC SFLWSG +  ++KA +AW  +C PK  GGL +  L++ N+ +L KL+W + + +  LW++WL     +      W ++ ++   SW+ KKI+KH+
Sbjct:  131 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRM-LSSTSLWVQWLRLYLLRKGSF--WSISGNTTLGSWMWKKILKHR 246          
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Match: AT3G24255.1 (| RNA-directed DNA polymerase (reverse transcriptase)-related family protein | Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606)

HSP 1 Score: 63.1586 bits (152), Expect = 4.156e-12
Identity = 34/118 (28.81%), Postives = 57/118 (48.31%), Query Frame = 0
Query:    1 MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDC-SRKAPIAWETICKPKVAGGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQVTNSSSWILKKIVKHKDM 117
            ++ +W+    LP+  +  I++IC SFLWSG +  ++KA +AW  +C PK  GGL +  L++ N+ +     W+I                           T   SW+ KKI+KH+ +
Sbjct:   77 LTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGS----FWSISGN------------------------TTLGSWMWKKILKHRAL 166          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2K3KF21|A0A2K3KF21_TRIPR5.713e-4044.74Uncharacterized protein (Fragment) OS=Trifolium pr... [more]
tr|A0A2K3LV24|A0A2K3LV24_TRIPR2.434e-3446.15Ribonuclease H OS=Trifolium pratense OX=57577 GN=L... [more]
tr|F4NCG1|F4NCG1_BETVV5.088e-3341.45Reverse transcriptase domain-containing protein OS... [more]
tr|A0A2K3MUX9|A0A2K3MUX9_TRIPR5.516e-3340.79Ribonuclease H OS=Trifolium pratense OX=57577 GN=L... [more]
tr|A0A2K3MY06|A0A2K3MY06_TRIPR2.025e-3244.76Zinc finger CCCH domain-containing protein 66-like... [more]
tr|F4NCG3|F4NCG3_BETVV1.786e-2938.16Reverse transcriptase domain-containing protein OS... [more]
tr|A0A1S3YCG6|A0A1S3YCG6_TOBAC5.360e-2941.61uncharacterized protein LOC107774796 isoform X1 OS... [more]
tr|A0A1U7VVL0|A0A1U7VVL0_NICSY7.749e-2945.30uncharacterized protein LOC104219920 OS=Nicotiana ... [more]
tr|A0A1S4CIA2|A0A1S4CIA2_TOBAC1.134e-2846.15uncharacterized protein LOC107819345 OS=Nicotiana ... [more]
tr|A0A6I9T9L4|A0A6I9T9L4_SESIN2.717e-2845.95uncharacterized protein LOC105164266 OS=Sesamum in... [more]
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BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.1g064480.1 vs. Araport11
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G24255.31.677e-1833.06| RNA-directed DNA polymerase (reverse transcripta... [more]
AT3G24255.51.827e-1833.06| RNA-directed DNA polymerase (reverse transcripta... [more]
AT3G24255.41.827e-1833.06| RNA-directed DNA polymerase (reverse transcripta... [more]
AT3G24255.72.596e-1833.61| RNA-directed DNA polymerase (reverse transcripta... [more]
AT3G24255.14.156e-1228.81| RNA-directed DNA polymerase (reverse transcripta... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 2..125

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.1g064480.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g064480.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g064480.1; organism=Vicia faba; type=mRNA; length=456bp
ATGTCCGCTTACTGGTTGCAGGTTCTTTCTCTCCCTAATCAGGTGATGAA
TCACATTGAGGCTATTTGTCGCAGTTTTTTGTGGAGTGGCTCTGATTGTA
GCAGGAAAGCCCCGATTGCTTGGGAAACAATCTGCAAACCAAAAGTTGCA
GGTGGCCTGAATGTAGTGAAGTTACAGCAATGGAACCAAGCTACACTGGG
AAAGTTGCTTTGGAATATTCATATGAAAGCAGACAGGTTATGGATTAGAT
GGCTGGACACTTTGTATTTCAAAGGTTGTGACATCTTGGATTGGCAGGTT
ACAAACTCCAGCTCATGGATTCTCAAGAAGATTGTCAAACATAAGGATAT
GTTGAAAAACAAAGCATATTGGAAGGAAGCTGTCAATGCAGGGAAGTATA
AAACTCGCATTATGTACAAGGCCATATGTGGTATTAGTGAGCACATGAAT
TGGTAA
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protein sequence of Vfaba.Hedin2.R1.1g064480.1_vfh_v1

>Vfaba.Hedin2.R1.1g064480.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g064480.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g064480.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=151bp
MSAYWLQVLSLPNQVMNHIEAICRSFLWSGSDCSRKAPIAWETICKPKVA
GGLNVVKLQQWNQATLGKLLWNIHMKADRLWIRWLDTLYFKGCDILDWQV
TNSSSWILKKIVKHKDMLKNKAYWKEAVNAGKYKTRIMYKAICGISEHMN
W
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mRNA from alignment at chr1S:417039276..417039731-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.1g064480.1_vfh_v1 ID=Vfaba.Hedin2.R1.1g064480.1_vfh_v1; Name=Vfaba.Hedin2.R1.1g064480.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1S:417039276..417039731- (Vicia faba
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