Vfaba.Hedin2.R1.2g124600.1

Transcript Overview
NameVfaba.Hedin2.R1.2g124600.1
Unique NameVfaba.Hedin2.R1.2g124600.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length528
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:750497410..750498857 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g124600Vfaba.Hedin2.R1.2g124600_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g124600.1_vfh_v1-exonVfaba.Hedin2.R1.2g124600.1_vfh_v1-exon-chr2_vfh_v1:750497410..750497835Vicia fabaexon
Vfaba.Hedin2.R1.2g124600.1_vfh_v1-exonVfaba.Hedin2.R1.2g124600.1_vfh_v1-exon-chr2_vfh_v1:750498756..750498857Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g124600.1_vfh_v1-cdsVfaba.Hedin2.R1.2g124600.1_vfh_v1-cds-chr2_vfh_v1:750497410..750497835Vicia fabaCDS
Vfaba.Hedin2.R1.2g124600.1_vfh_v1-cdsVfaba.Hedin2.R1.2g124600.1_vfh_v1-cds-chr2_vfh_v1:750498756..750498857Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.2g124600.1_vfh_v1Vfaba.Hedin2.R1.2g124600.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.2g124600.1_vfh_v1Vfaba.Hedin2.R1.2g124600.1_vfh_v1-proteinVicia fabapolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g124600.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.2g124600.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.2g124600.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 6..24

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.2g124600.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g124600.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g124600.1; organism=Vicia faba; type=mRNA; length=528bp
ATGCGTACTACTCCACCTCATATGCATCCTACTCCACCTCTTATGCATCC
TACTCCACCTCATATGCATACTACTCCACCTATGTCTGGATCTTTCACTA
GATTACTATCCACACCTTCCGGATACACATCATTCCCGTCCATATCCCCG
ACAACTTTTATTAGTCCTACTGGATACACACTATATTTTTCTACTATACC
CAGTACATATTTTCCTATGCCTTCCATGCAGTCGAGTGGATCCATTCATA
TGGAGCTAGGTAGATCTAGCATGCCCCGACCCATGCCTTCCAAGGATGAT
CATGGAGATACCATTACTCCCGGAGATTCCAGTGCTCTTGGAGAAACCAA
TGCTCAAGAAGATACAAGTTCTACTGAGGGGAAAACAAGGACGGAGCACA
TCTTGAAGAGAAATGAGCCACAAAAAGAGGAGTTTGATAGACAACTTGCC
ATACAGTTGTCAGAGCATCCTGAACTTGAACCGCCACCGGGATATCCATT
TGATCTTGTTGTGGGTTTTCAGACATGA
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protein sequence of Vfaba.Hedin2.R1.2g124600.1_vfh_v1

>Vfaba.Hedin2.R1.2g124600.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g124600.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g124600.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=175bp
MRTTPPHMHPTPPLMHPTPPHMHTTPPMSGSFTRLLSTPSGYTSFPSISP
TTFISPTGYTLYFSTIPSTYFPMPSMQSSGSIHMELGRSSMPRPMPSKDD
HGDTITPGDSSALGETNAQEDTSSTEGKTRTEHILKRNEPQKEEFDRQLA
IQLSEHPELEPPPGYPFDLVVGFQT
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mRNA from alignment at chr2:750497410..750498857+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.2g124600.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g124600.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g124600.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:750497410..750498857+ (Vicia faba
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