Vfaba.Hedin2.R1.4g204960.1

Transcript Overview
NameVfaba.Hedin2.R1.4g204960.1
Unique NameVfaba.Hedin2.R1.4g204960.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length303
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4chromosomechr4:1399172780..1399173172 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g204960Vfaba.Hedin2.R1.4g204960_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g204960.1_vfh_v1-exonVfaba.Hedin2.R1.4g204960.1_vfh_v1-exon-chr4_vfh_v1:1399172780..1399173037Vicia fabaexon
Vfaba.Hedin2.R1.4g204960.1_vfh_v1-exonVfaba.Hedin2.R1.4g204960.1_vfh_v1-exon-chr4_vfh_v1:1399173128..1399173172Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g204960.1_vfh_v1-cdsVfaba.Hedin2.R1.4g204960.1_vfh_v1-cds-chr4_vfh_v1:1399172780..1399173037Vicia fabaCDS
Vfaba.Hedin2.R1.4g204960.1_vfh_v1-cdsVfaba.Hedin2.R1.4g204960.1_vfh_v1-cds-chr4_vfh_v1:1399173128..1399173172Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.4g204960.1_vfh_v1Vfaba.Hedin2.R1.4g204960.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.4g204960.1_vfh_v1Vfaba.Hedin2.R1.4g204960.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KA85|A0A2K3KA85_TRIPR (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g053383 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.952e-38
Identity = 72/100 (72.00%), Postives = 77/100 (77.00%), Query Frame = 0
Query:    1 MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100
            +I VD DEVW EYVKSHPN KD+ YAPIPLFDKL HAFGK  ATGKG AP ADNVEEIDKE EE  NDEENE+ MT S S N+SKRK D  +I F KR K
Sbjct:   23 IIKVD-DEVWNEYVKSHPNAKDHRYAPIPLFDKLAHAFGKDRATGKGAAPPADNVEEIDKEDEEQGNDEENEIGMTQSPSINQSKRKADIMEIQFGKRKK 121          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392MLJ6|A0A392MLJ6_9FABA (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0008856 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.257e-27
Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0
Query:   16 SHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100
            SHPN KDY YA I LFDKL HAFGK  A+GK   P ADNV+EIDKE EE  NDEENE+ MT S S  +SKRK D+ +I F KRNK
Sbjct:    1 SHPNAKDYRYALIALFDKLAHAFGKDCASGKSVVPPADNVKEIDKEDEEQCNDEENEIGMTQSPSIXQSKRKLDHMEIQFRKRNK 85          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392NW98|A0A392NW98_9FABA (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.412e-27
Identity = 55/85 (64.71%), Postives = 61/85 (71.76%), Query Frame = 0
Query:   16 SHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100
            SHPN KDY YAPI LFDKL  A+GK  A G   AP  D VEEIDKE EE +NDEE E+ MT S S N+SKRK D+ +IHF KRNK
Sbjct:    1 SHPNAKDYRYAPISLFDKLFRAYGKDCANGNCVAPPTDKVEEIDKEDEEQYNDEEYEIGMTQSPSINQSKRKLDHMEIHFRKRNK 85          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LNR8|A0A2K3LNR8_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g036149 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.627e-27
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0
Query:   16 SHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100
            S+PN KDY YAPI LF KL  AFGKY ATGK  AP  DN+EEI+KE +E  NDEENE+ MT SSS ++SK K +N    F KRNK
Sbjct:    1 SYPNAKDYRYAPISLFGKLAQAFGKYRATGKCVAPPTDNIEEINKEDQEQDNDEENEIGMTQSSSIDQSKTKANNMKNQFRKRNK 85          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3M4Y5|A0A2K3M4Y5_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g041925 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.390e-26
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0
Query:   16 SHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100
            S+PN KDY YAPI LF KL  AFGKY ATGK  AP  DN+EEI+KE +E  NDEENE+ MT SSS ++SK K +N    F KRNK
Sbjct:   20 SYPNAKDYRYAPISLFGKLAQAFGKYRATGKCVAPPTDNIEEINKEDQEQDNDEENEIGMTQSSSIDQSKTKANNMKNQFRKRNK 104          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MPT8|A0A2K3MPT8_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g015973 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.851e-25
Identity = 56/87 (64.37%), Postives = 62/87 (71.26%), Query Frame = 0
Query:   14 VKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100
            +KSHPN KDY YA I LFDKL  AFGK  A  K   P ADNV+EIDKE EE  NDEENE+ MT S S N+SKRK D+ +I F KRNK
Sbjct:   46 IKSHPNAKDYWYALIALFDKLALAFGKDCA--KSVVPPADNVKEIDKEDEEQCNDEENEIGMTQSPSINQSKRKLDHMEIQFRKRNK 130          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KP47|A0A2K3KP47_TRIPR (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g055953 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.514e-24
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 0
Query:    1 MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEE 64
            +I VD DEVW EYVKSHPN KD+ YAPIPLFDKL HAFGK  ATGKG AP ADNVEEIDKE EE
Sbjct:   90 IIKVD-DEVWNEYVKSHPNAKDHRYAPIPLFDKLAHAFGKDRATGKGAAPPADNVEEIDKEDEE 152          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072U248|A0A072U248_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g094990 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.669e-24
Identity = 71/99 (71.72%), Postives = 75/99 (75.76%), Query Frame = 0
Query:    2 ISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100
            I VDSDEVW EYVKSHPN KDY YAPIPLFDKL HAFGK  ATGKG AP ADNVEEID+E EEL NDEE E E++   S N+SKRK    DI   KRNK
Sbjct:  225 IKVDSDEVWKEYVKSHPNAKDYSYAPIPLFDKLGHAFGKDRATGKGVAPSADNVEEIDREEEEL-NDEEKEEEISQLPSINQSKRKTGQMDIQSRKRNK 322          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3JMX9|A0A2K3JMX9_TRIPR (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g049024 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.323e-23
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0
Query:    1 MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKS--KRKFDNKDIHFNKRNK 100
            +I V++DEVW +YVKSHPN KDY YAPI L DKL HAFGK  ATGK  AP    +  +DKE EE  ND E EVE+T S   N+S  KRK D+ ++   KRN+
Sbjct:   99 IIKVENDEVWKDYVKSHPNAKDYRYAPIRLIDKLAHAFGKDRATGKRSAPLLIMLRRLDKEEEEQNND-EFEVEVTQSPFLNQSQAKRKCDHMELQPKKRNR 199          
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|I3STD9|I3STD9_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.796e-16
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    1 MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSK-RKFDNKDIHFNKRNK 100
            MI VDS++VW EY+KSHPN KDY  A IPL +KL +AFGK  ATGK     AD VEE+DKE EE  + ++  VEMT +SS NKS+ RK D  +    K+N+
Sbjct:   15 MIKVDSEDVWNEYIKSHPNAKDYRNARIPLLEKLAYAFGKDRATGKLAYSPADVVEELDKEEEEQAHHDDVRVEMTPTSSVNKSQCRKDDLVESQSRKKNR 115          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A2K3KA85|A0A2K3KA85_TRIPR4.952e-3872.00Myb_DNA-bind_3 domain-containing protein (Fragment... [more]
tr|A0A392MLJ6|A0A392MLJ6_9FABA1.257e-2765.88Uncharacterized protein (Fragment) OS=Trifolium me... [more]
tr|A0A392NW98|A0A392NW98_9FABA3.412e-2764.71Uncharacterized protein (Fragment) OS=Trifolium me... [more]
tr|A0A2K3LNR8|A0A2K3LNR8_TRIPR9.627e-2762.35Uncharacterized protein (Fragment) OS=Trifolium pr... [more]
tr|A0A2K3M4Y5|A0A2K3M4Y5_TRIPR1.390e-2662.35Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A2K3MPT8|A0A2K3MPT8_TRIPR1.851e-2564.37Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A2K3KP47|A0A2K3KP47_TRIPR2.514e-2479.69Myb_DNA-bind_3 domain-containing protein (Fragment... [more]
tr|A0A072U248|A0A072U248_MEDTR6.669e-2471.72Myb/SANT-like DNA-binding domain protein OS=Medica... [more]
tr|A0A2K3JMX9|A0A2K3JMX9_TRIPR1.323e-2355.88Myb_DNA-bind_3 domain-containing protein (Fragment... [more]
tr|I3STD9|I3STD9_LOTJA8.796e-1654.46Uncharacterized protein OS=Lotus japonicus OX=3430... [more]
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BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..100
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 8..95

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.4g204960.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g204960.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g204960.1; organism=Vicia faba; type=mRNA; length=303bp
ATGATTAGTGTTGATAGTGATGAAGTGTGGATTGAGTATGTAAAGAGTCA
TCCAAATGTAAAAGATTATATATATGCTCCAATCCCACTTTTTGACAAAC
TTGTCCATGCATTTGGAAAATACCATGCTACCGGTAAAGGGGATGCTCCC
CATGCTGATAATGTTGAGGAGATAGATAAAGAAATAGAAGAGCTATTTAA
CGATGAGGAGAATGAAGTAGAAATGACTTCGTCATCGTCTAATAATAAAT
CTAAAAGGAAGTTTGACAACAAAGATATACATTTCAACAAAAGAAACAAA
TGA
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protein sequence of Vfaba.Hedin2.R1.4g204960.1_vfh_v1

>Vfaba.Hedin2.R1.4g204960.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g204960.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g204960.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=100bp
MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAP
HADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK
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mRNA from alignment at chr4:1399172780..1399173172-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.4g204960.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g204960.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g204960.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1399172780..1399173172- (Vicia faba
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