Vfaba.Hedin2.R1.4g204960.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KA85|A0A2K3KA85_TRIPR (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g053383 PE=4 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 4.952e-38 Identity = 72/100 (72.00%), Postives = 77/100 (77.00%), Query Frame = 0 Query: 1 MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100 +I VD DEVW EYVKSHPN KD+ YAPIPLFDKL HAFGK ATGKG AP ADNVEEIDKE EE NDEENE+ MT S S N+SKRK D +I F KR K Sbjct: 23 IIKVD-DEVWNEYVKSHPNAKDHRYAPIPLFDKLAHAFGKDRATGKGAAPPADNVEEIDKEDEEQGNDEENEIGMTQSPSINQSKRKADIMEIQFGKRKK 121
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392MLJ6|A0A392MLJ6_9FABA (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0008856 PE=4 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.257e-27 Identity = 56/85 (65.88%), Postives = 62/85 (72.94%), Query Frame = 0 Query: 16 SHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100 SHPN KDY YA I LFDKL HAFGK A+GK P ADNV+EIDKE EE NDEENE+ MT S S +SKRK D+ +I F KRNK Sbjct: 1 SHPNAKDYRYALIALFDKLAHAFGKDCASGKSVVPPADNVKEIDKEDEEQCNDEENEIGMTQSPSIXQSKRKLDHMEIQFRKRNK 85
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392NW98|A0A392NW98_9FABA (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 3.412e-27 Identity = 55/85 (64.71%), Postives = 61/85 (71.76%), Query Frame = 0 Query: 16 SHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100 SHPN KDY YAPI LFDKL A+GK A G AP D VEEIDKE EE +NDEE E+ MT S S N+SKRK D+ +IHF KRNK Sbjct: 1 SHPNAKDYRYAPISLFDKLFRAYGKDCANGNCVAPPTDKVEEIDKEDEEQYNDEEYEIGMTQSPSINQSKRKLDHMEIHFRKRNK 85
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3LNR8|A0A2K3LNR8_TRIPR (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g036149 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 9.627e-27 Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0 Query: 16 SHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100 S+PN KDY YAPI LF KL AFGKY ATGK AP DN+EEI+KE +E NDEENE+ MT SSS ++SK K +N F KRNK Sbjct: 1 SYPNAKDYRYAPISLFGKLAQAFGKYRATGKCVAPPTDNIEEINKEDQEQDNDEENEIGMTQSSSIDQSKTKANNMKNQFRKRNK 85
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3M4Y5|A0A2K3M4Y5_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g041925 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.390e-26 Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 0 Query: 16 SHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100 S+PN KDY YAPI LF KL AFGKY ATGK AP DN+EEI+KE +E NDEENE+ MT SSS ++SK K +N F KRNK Sbjct: 20 SYPNAKDYRYAPISLFGKLAQAFGKYRATGKCVAPPTDNIEEINKEDQEQDNDEENEIGMTQSSSIDQSKTKANNMKNQFRKRNK 104
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MPT8|A0A2K3MPT8_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g015973 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.851e-25 Identity = 56/87 (64.37%), Postives = 62/87 (71.26%), Query Frame = 0 Query: 14 VKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100 +KSHPN KDY YA I LFDKL AFGK A K P ADNV+EIDKE EE NDEENE+ MT S S N+SKRK D+ +I F KRNK Sbjct: 46 IKSHPNAKDYWYALIALFDKLALAFGKDCA--KSVVPPADNVKEIDKEDEEQCNDEENEIGMTQSPSINQSKRKLDHMEIQFRKRNK 130
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3KP47|A0A2K3KP47_TRIPR (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g055953 PE=4 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.514e-24 Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 0 Query: 1 MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEE 64 +I VD DEVW EYVKSHPN KD+ YAPIPLFDKL HAFGK ATGKG AP ADNVEEIDKE EE Sbjct: 90 IIKVD-DEVWNEYVKSHPNAKDHRYAPIPLFDKLAHAFGKDRATGKGAAPPADNVEEIDKEDEE 152
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072U248|A0A072U248_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g094990 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.669e-24 Identity = 71/99 (71.72%), Postives = 75/99 (75.76%), Query Frame = 0 Query: 2 ISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSKRKFDNKDIHFNKRNK 100 I VDSDEVW EYVKSHPN KDY YAPIPLFDKL HAFGK ATGKG AP ADNVEEID+E EEL NDEE E E++ S N+SKRK DI KRNK Sbjct: 225 IKVDSDEVWKEYVKSHPNAKDYSYAPIPLFDKLGHAFGKDRATGKGVAPSADNVEEIDREEEEL-NDEEKEEEISQLPSINQSKRKTGQMDIQSRKRNK 322
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3JMX9|A0A2K3JMX9_TRIPR (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g049024 PE=4 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.323e-23 Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0 Query: 1 MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKS--KRKFDNKDIHFNKRNK 100 +I V++DEVW +YVKSHPN KDY YAPI L DKL HAFGK ATGK AP + +DKE EE ND E EVE+T S N+S KRK D+ ++ KRN+ Sbjct: 99 IIKVENDEVWKDYVKSHPNAKDYRYAPIRLIDKLAHAFGKDRATGKRSAPLLIMLRRLDKEEEEQNND-EFEVEVTQSPFLNQSQAKRKCDHMELQPKKRNR 199
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Match: tr|I3STD9|I3STD9_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.796e-16 Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 0 Query: 1 MISVDSDEVWIEYVKSHPNVKDYIYAPIPLFDKLVHAFGKYHATGKGDAPHADNVEEIDKEIEELFNDEENEVEMTSSSSNNKSK-RKFDNKDIHFNKRNK 100 MI VDS++VW EY+KSHPN KDY A IPL +KL +AFGK ATGK AD VEE+DKE EE + ++ VEMT +SS NKS+ RK D + K+N+ Sbjct: 15 MIKVDSEDVWNEYIKSHPNAKDYRNARIPLLEKLAYAFGKDRATGKLAYSPADVVEELDKEEEEQAHHDDVRVEMTPTSSVNKSQCRKDDLVESQSRKKNR 115 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.4g204960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.4g204960.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g204960.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g204960.1; organism=Vicia faba; type=mRNA; length=303bpback to top protein sequence of Vfaba.Hedin2.R1.4g204960.1_vfh_v1 >Vfaba.Hedin2.R1.4g204960.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g204960.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g204960.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=100bpback to top mRNA from alignment at chr4:1399172780..1399173172- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.4g204960.1_vfh_v1 ID=Vfaba.Hedin2.R1.4g204960.1_vfh_v1; Name=Vfaba.Hedin2.R1.4g204960.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr4:1399172780..1399173172- (Vicia fababack to top |