Vfaba.Hedin2.R1.6g012440.1

Transcript Overview
NameVfaba.Hedin2.R1.6g012440.1
Unique NameVfaba.Hedin2.R1.6g012440.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length375
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr6chromosomechr6:99915116..99915573 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g012440Vfaba.Hedin2.R1.6g012440_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g012440.1_vfh_v1-exonVfaba.Hedin2.R1.6g012440.1_vfh_v1-exon-chr6_vfh_v1:99915116..99915357Vicia fabaexon
Vfaba.Hedin2.R1.6g012440.1_vfh_v1-exonVfaba.Hedin2.R1.6g012440.1_vfh_v1-exon-chr6_vfh_v1:99915441..99915573Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g012440.1_vfh_v1-cdsVfaba.Hedin2.R1.6g012440.1_vfh_v1-cds-chr6_vfh_v1:99915116..99915357Vicia fabaCDS
Vfaba.Hedin2.R1.6g012440.1_vfh_v1-cdsVfaba.Hedin2.R1.6g012440.1_vfh_v1-cds-chr6_vfh_v1:99915441..99915573Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g012440.1_vfh_v1Vfaba.Hedin2.R1.6g012440.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.6g012440.1_vfh_v1Vfaba.Hedin2.R1.6g012440.1_vfh_v1-proteinVicia fabapolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.6g012440.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Vfaba.Hedin2.R1.6g012440.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Vfaba.Hedin2.R1.6g012440.1 vs.
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..105

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.6g012440.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g012440.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g012440.1; organism=Vicia faba; type=mRNA; length=375bp
ATGAAAAGTACAATGCACATATATGTTGAGCATAAAGGTGATGTTCAAGA
AGATGACGTATGTGATGTTCAAGAAGATGGTGTAGGAAATGTTCAAGAAG
ATGAAGTAGTTGATGTTCATACAAATGATGTAGTTGATGGTTTATTATTT
GATGATAGTGAGGATGAGAGGGCTGCTAAGTTGGATAATTGCTTTAAAGA
CCGGGGCGTAAGTGGTGGGGTAAAAGTTAAAGCAAAGAAGCACAAGATCA
CTCCAAAGAAACTTCCAACTGTTGTTGATAATGCAGGTTCATCTAGTGGT
GTAGATAATGAGATGGACGTCAATTATGCTAGTGAAGAGCTTGGCGGCAG
TGACCCTGGTGCTTCTGATGAATAG
back to top

protein sequence of Vfaba.Hedin2.R1.6g012440.1_vfh_v1

>Vfaba.Hedin2.R1.6g012440.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g012440.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g012440.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=124bp
MKSTMHIYVEHKGDVQEDDVCDVQEDGVGNVQEDEVVDVHTNDVVDGLLF
DDSEDERAAKLDNCFKDRGVSGGVKVKAKKHKITPKKLPTVVDNAGSSSG
VDNEMDVNYASEELGGSDPGASDE
back to top

mRNA from alignment at chr6:99915116..99915573-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.6g012440.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g012440.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g012440.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr6:99915116..99915573- (Vicia faba
back to top