Vfaba.Hedin2.R1.6g151520.1

Transcript Overview
NameVfaba.Hedin2.R1.6g151520.1
Unique NameVfaba.Hedin2.R1.6g151520.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length402
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr6chromosomechr6:1189417569..1189418126 +Vicia faba inbred line Hedin/2 genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g151520Vfaba.Hedin2.R1.6g151520_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g151520.1_vfh_v1-exonVfaba.Hedin2.R1.6g151520.1_vfh_v1-exon-chr6_vfh_v1:1189417569..1189417657Vicia fabaexon
Vfaba.Hedin2.R1.6g151520.1_vfh_v1-exonVfaba.Hedin2.R1.6g151520.1_vfh_v1-exon-chr6_vfh_v1:1189417814..1189418126Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g151520.1_vfh_v1-cdsVfaba.Hedin2.R1.6g151520.1_vfh_v1-cds-chr6_vfh_v1:1189417569..1189417657Vicia fabaCDS
Vfaba.Hedin2.R1.6g151520.1_vfh_v1-cdsVfaba.Hedin2.R1.6g151520.1_vfh_v1-cds-chr6_vfh_v1:1189417814..1189418126Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.6g151520.1_vfh_v1Vfaba.Hedin2.R1.6g151520.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.6g151520.1_vfh_v1Vfaba.Hedin2.R1.6g151520.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396GPE2|A0A396GPE2_MEDTR (Putative ribonuclease H-like domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0383051 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.290e-20
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0
Query:   38 ENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            E +E+  EV   +Q +   + +CAS+IL+ DFPF  FE E ++N  + LNPNI++PP +VIEAYVS+LYMKEKLKLK ELAT
Sbjct:   26 EQLETGDEV---DQFDSRFLPICASMILSNDFPFEFFEREGMRNFMKVLNPNIVLPPVDVIEAYVSDLYMKEKLKLKQELAT 104          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396GPC8|A0A396GPC8_MEDTR (Putative HAT dimerization domain, ribonuclease H-like domain, hAT-like transposase, RNase-H OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0383081 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.424e-20
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 0
Query:   32 LKKCHKENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            +++  +EN+ES+GE+   +Q+   LV  CAS+IL+ DFPF  FE E + N  + LNPN +MPP NVI+AYVS+LY K KLKLK +LAT
Sbjct:    7 IEEISQENVESIGEI---DQL--WLVKRCASMILSNDFPFDFFEREGMSNFMKVLNPNAVMPPINVIKAYVSDLYTKAKLKLKQDLAT 89          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396IDQ4|A0A396IDQ4_MEDTR (Putative HAT dimerization domain, ribonuclease H-like domain, hAT-like transposase, RNase-H OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0052681 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.559e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 0
Query:   37 KENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            +E +E   EV   +QM+   V +CAS ILA D PFH FELE ++   ++LNPNI +PPRNVIEAYVS LY KEK KLK +L T
Sbjct:   12 EEKIEFDNEV---DQMDSRFVEICASTILAHDLPFHFFELEGMRKYSEFLNPNIPIPPRNVIEAYVSHLYTKEKPKLKQQLTT 91          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3ND78|A0A2K3ND78_TRIPR (Transposon protein OS=Trifolium pratense OX=57577 GN=L195_g024285 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.541e-19
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0
Query:   37 KENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            +ENME   EV   +Q E   V +CAS+ILA D PFH FE E ++   ++LNPN + P +NVIEAYVS LY KEKLKLK ELAT
Sbjct:   12 QENMEFDNEV---DQRESQSVDICASMILAHDLPFHFFEQEVIRKYSEFLNPNTVTPTKNVIEAYVSHLYSKEKLKLKQELAT 91          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LT99|A0A2Z6LT99_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_78470 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.754e-18
Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0
Query:   51 QMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            Q +   + +CAS+IL  DFPF +FE E  +N  + LNPN+++PP NVIEAYVS+LYM+EKLKLK ELAT
Sbjct:   30 QFDAQFLPICASMILQNDFPFDYFERETTRNFTRQLNPNLVLPPPNVIEAYVSDLYMEEKLKLKQELAT 98          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LNB1|A0A2Z6LNB1_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_78440 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 7.300e-18
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 0
Query:   38 ENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELA 118
            EN+ES  ++   +Q +   VH CAS+IL  D+ F  FE  AL+NL QYLNP++ MPP NVI++YV +LY KEKLKLK ELA
Sbjct:   13 ENLESGADL---SQFDSRTVHTCASMILRNDYCFDFFEHSALRNLAQYLNPDLAMPPINVIKSYVFDLYTKEKLKLKQELA 90          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NIN1|A0A2K3NIN1_TRIPR (Transposon protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g026215 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.497e-17
Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 0
Query:   37 KENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            +E  ES  EV    + +   + +CAS+IL  DFPF +FE E  +N  Q  NPN+++PP NVIEAYVS+LYM+EK KLK ELAT
Sbjct:   19 EEEFESDDEV---GRFDSQFLPICASMILQNDFPFDYFERETTRNSTQQFNPNLVLPPPNVIEAYVSDLYMEEKSKLKQELAT 98          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MUA2|A0A2Z6MUA2_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_78400 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.799e-15
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0
Query:   37 KENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            +E ME   EV   +QME  L H CA++IL  D PF  FE   ++   + LNPN ++PP+NVIEAYV+ LY KEK KLK ELAT
Sbjct:    3 QEKMEFDDEV---DQMESRL-HTCANIILELDLPFDLFEHVGMRRYTESLNPNAVIPPKNVIEAYVTHLYTKEKSKLKQELAT 81          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392NMP0|A0A392NMP0_9FABA (Zinc finger BED domain-containing protein ricesleeper 2-like (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.157e-14
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 0
Query:   38 ENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            ENMES G+  D  Q +  +V  CAS+IL  D+PF  FE  AL+NL +YLNP+ +MPP NVI+AYV +LY+KEKLKLK ELAT
Sbjct:    8 ENMES-GD--DLGQFDSQIVRTCASMILQNDYPFDFFERSALRNLAKYLNPDFVMPPINVIKAYVFDLYLKEKLKLKQELAT 86          
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396GW00|A0A396GW00_MEDTR (Putative HAT dimerization domain, ribonuclease H-like domain, hAT-like transposase, RNase-H OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0383041 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.599e-13
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   37 KENMESVGEVV-----DEN--QMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119
            +ENMES  EV      DE   Q E  LV  CAS+IL+ D+ F H E +++KN+ ++L+ +I++PP +V+E Y  +LY +EKL +K +LAT
Sbjct:    3 QENMESDCEVDLLDSDDETMEQKESRLVKTCASMILSSDYSFRHCEYDSMKNIMEWLSQDIVLPPPDVVELYFEDLYTEEKLNIKQQLAT 92          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A396GPE2|A0A396GPE2_MEDTR1.290e-2056.10Putative ribonuclease H-like domain-containing pro... [more]
tr|A0A396GPC8|A0A396GPC8_MEDTR8.424e-2053.41Putative HAT dimerization domain, ribonuclease H-l... [more]
tr|A0A396IDQ4|A0A396IDQ4_MEDTR1.559e-1956.63Putative HAT dimerization domain, ribonuclease H-l... [more]
tr|A0A2K3ND78|A0A2K3ND78_TRIPR2.541e-1957.83Transposon protein OS=Trifolium pratense OX=57577 ... [more]
tr|A0A2Z6LT99|A0A2Z6LT99_TRISU3.754e-1859.42Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A2Z6LNB1|A0A2Z6LNB1_TRISU7.300e-1855.56Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A2K3NIN1|A0A2K3NIN1_TRIPR1.497e-1753.01Transposon protein (Fragment) OS=Trifolium pratens... [more]
tr|A0A2Z6MUA2|A0A2Z6MUA2_TRISU9.799e-1553.01Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A392NMP0|A0A392NMP0_9FABA7.157e-1459.76Zinc finger BED domain-containing protein riceslee... [more]
tr|A0A396GW00|A0A396GW00_MEDTR1.599e-1344.44Putative HAT dimerization domain, ribonuclease H-l... [more]
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BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.6g151520.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g151520.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g151520.1; organism=Vicia faba; type=mRNA; length=402bp
ATGGTAATCCCGGGAACTTGTTTTCTCACTTTCTCTTCTTCATTTCATCC
ATCGCTTCGTTCGCGTCTCCGCCATCTCGTTTCCCGACGGTGTTTGAAGA
AATGTCACAAAGAAAATATGGAATCTGTTGGTGAGGTAGTTGATGAAAAT
CAAATGGAACCACTGTTAGTGCATTTATGTGCTTCTGTCATCCTTGCACG
TGATTTTCCGTTTCATCATTTTGAGTTAGAAGCACTTAAGAATCTCTACC
AGTATTTGAATCCAAATATTCTTATGCCTCCTAGAAATGTTATTGAGGCT
TATGTCTCGGAATTGTACATGAAAGAGAAACTCAAGCTTAAACACGAATT
GGCTACCAGTACTTGTATTTTTTGCAAGTTTGGAAAGTCCAATGTGTTCT
AG
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protein sequence of Vfaba.Hedin2.R1.6g151520.1_vfh_v1

>Vfaba.Hedin2.R1.6g151520.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g151520.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g151520.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=133bp
MVIPGTCFLTFSSSFHPSLRSRLRHLVSRRCLKKCHKENMESVGEVVDEN
QMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEA
YVSELYMKEKLKLKHELATSTCIFCKFGKSNVF
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mRNA from alignment at chr6:1189417569..1189418126+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.6g151520.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g151520.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g151520.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr6:1189417569..1189418126+ (Vicia faba
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