Vfaba.Tiffany.R1.1g323720.1

Transcript Overview
NameVfaba.Tiffany.R1.1g323720.1
Unique NameVfaba.Tiffany.R1.1g323720.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length453
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1Lchromosomechr1L:1286623258..1286628256 +Vicia faba cv. Tiffany genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.1g323720Vfaba.Tiffany.R1.1g323720_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.1g323720.1_tif_v1-exonVfaba.Tiffany.R1.1g323720.1_tif_v1-exon-chr1L_tif_v1:1286623258..1286623603Vicia fabaexon
Vfaba.Tiffany.R1.1g323720.1_tif_v1-exonVfaba.Tiffany.R1.1g323720.1_tif_v1-exon-chr1L_tif_v1:1286628150..1286628256Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.1g323720.1_tif_v1-cdsVfaba.Tiffany.R1.1g323720.1_tif_v1-cds-chr1L_tif_v1:1286623258..1286623603Vicia fabaCDS
Vfaba.Tiffany.R1.1g323720.1_tif_v1-cdsVfaba.Tiffany.R1.1g323720.1_tif_v1-cds-chr1L_tif_v1:1286628150..1286628256Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.1g323720.1_tif_v1Vfaba.Tiffany.R1.1g323720.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.1g323720.1_tif_v1Vfaba.Tiffany.R1.1g323720.1_tif_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7XI55|A0A3Q7XI55_CICAR (uncharacterized protein LOC113784102 OS=Cicer arietinum OX=3827 GN=LOC113784102 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.809e-13
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 0
Query:   17 GRGRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGFPPRYHTRNNKFSSESKPSKDSEHQGV------------ISKEDYQHLLILWQQSKKDDQ---ASKNSTVD--NLIISGIFNPGDVGDYVIGEGVWMRGRMEM 135
            G G G+G     MLCT C+K NHT+D  ++KHGFP  Y  RNN+F++ S P+ DS++  +            +SKE YQ L+ L   SK D     A+KNS  D  NLI+S I N   V +++    +W+   ME+
Sbjct:  113 GCGCGRGQPHPSMLCTHCHKNNHTVDTCYYKHGFPSGY--RNNQFANSSSPN-DSKNPSLSQPLQQPDSNNHLSKEYYQILINLLHHSKSDSATFFATKNSISDQSNLIVSSISNTSFVSNHL---SIWI---MEL 239          
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396GD37|A0A396GD37_MEDTR (Putative RNA-directed DNA polymerase OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0334511 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.428e-12
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 0
Query:   16 FGRGRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGFPPRYHTRN---------NKFSSESKP-----------SKDSEHQGVISKEDYQHLLILWQQSKKDDQASKNSTVD 105
             GRGRGKG  KT MLC+ CNKTNHT++N +FKHGFPP Y +RN         N    E KP           S  +++   +S+ +YQ+L+ L +  K +    K+ T D
Sbjct:  109 LGRGRGKG-PKTSMLCSNCNKTNHTVENCYFKHGFPPGYRSRNQLDAMKSSFNNGGQEPKPTPHPNNNRSVDSNTADNNLPLSRTEYQYLINLLKSFKLESSTGKSITND 217          
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DZN3|A0A1S3DZN3_CICAR (uncharacterized protein LOC105851674 OS=Cicer arietinum OX=3827 GN=LOC105851674 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.647e-11
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 0
Query:   19 GRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGFPPRY---------HTRNNKFSSESKPSKDSEHQGVISKEDYQHLLILWQQSKKDDQAS 99
            GRG+G  +  M CT C+K NHT+D  +FKHGFPP Y          T ++K S  S+P + S+    ++KEDYQ L+ L   SK D   S
Sbjct:  181 GRGRGQLRLSMFCTHCHKNNHTVDTCYFKHGFPPGYCKNQFANLSSTNDSKNSFLSQPPQLSDSNNRLNKEDYQILINLLHHSKSDAATS 270          
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y1N6|A0A1S2Y1N6_CICAR (uncharacterized protein LOC101506742 OS=Cicer arietinum OX=3827 GN=LOC101506742 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.066e-11
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   17 GRGRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGFPPRYHTRNNKFS-SESKPSKDSEHQGV---------ISKEDYQHLLILWQQSKKD 95
             RGRG+G SK  M CT C+KTNHT++  +FKHGFPP Y +     S S+S  +  + H  +         +SKED++ L+ L   SK+D
Sbjct:  211 ARGRGRGPSKNQMFCTNCDKTNHTMETCYFKHGFPPGYRSHKPSTSNSDSANNNKTVHSAISTPGDLSTQLSKEDFKLLINLLHSSKQD 299          
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
tr|A0A3Q7XI55|A0A3Q7XI55_CICAR6.809e-1338.97uncharacterized protein LOC113784102 OS=Cicer arie... [more]
tr|A0A396GD37|A0A396GD37_MEDTR4.428e-1240.00Putative RNA-directed DNA polymerase OS=Medicago t... [more]
tr|A0A1S3DZN3|A0A1S3DZN3_CICAR6.647e-1142.22uncharacterized protein LOC105851674 OS=Cicer arie... [more]
tr|A0A1S2Y1N6|A0A1S2Y1N6_CICAR8.066e-1141.57uncharacterized protein LOC101506742 OS=Cicer arie... [more]
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BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..77

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.1g323720.1_tif_v1 ID=Vfaba.Tiffany.R1.1g323720.1_tif_v1; Name=Vfaba.Tiffany.R1.1g323720.1; organism=Vicia faba; type=mRNA; length=453bp
ATGACTCACTCTTTAACAGTTTTACTTGCTAACAATTCTCGGTCTTTTGG
CCGTGGAAGAGGAAAAGGAAACTCCAAAACACATATGCTATGCACCAAAT
GCAACAAAACCAATCACACTATAGATAACTTCCATTTCAAGCATGGTTTT
CCCCCCAGATATCACACCAGAAACAATAAGTTCTCATCAGAATCCAAGCC
ATCTAAGGATTCAGAGCATCAAGGGGTTATATCCAAGGAAGATTATCAAC
ATTTGCTTATCCTCTGGCAACAATCCAAGAAAGACGACCAAGCTTCAAAG
AATTCAACTGTTGATAATCTCATTATATCAGGTATCTTCAATCCAGGTGA
TGTTGGTGATTACGTGATCGGAGAAGGAGTATGGATGAGAGGAAGAATGG
AAATGAGTGGAAGCAAGGTGATGATTTGTACAGGCGGTGAGGGGCGAAGG
TAG
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protein sequence of Vfaba.Tiffany.R1.1g323720.1_tif_v1

>Vfaba.Tiffany.R1.1g323720.1_tif_v1 ID=Vfaba.Tiffany.R1.1g323720.1_tif_v1; Name=Vfaba.Tiffany.R1.1g323720.1_tif_v1; organism=Vicia faba; type=polypeptide; length=150bp
MTHSLTVLLANNSRSFGRGRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGF
PPRYHTRNNKFSSESKPSKDSEHQGVISKEDYQHLLILWQQSKKDDQASK
NSTVDNLIISGIFNPGDVGDYVIGEGVWMRGRMEMSGSKVMICTGGEGRR
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mRNA from alignment at chr1L:1286623258..1286628256+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.1g323720.1_tif_v1 ID=Vfaba.Tiffany.R1.1g323720.1_tif_v1; Name=Vfaba.Tiffany.R1.1g323720.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1L:1286623258..1286628256+ (Vicia faba
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