Vfaba.Tiffany.R1.1g323720.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7XI55|A0A3Q7XI55_CICAR (uncharacterized protein LOC113784102 OS=Cicer arietinum OX=3827 GN=LOC113784102 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 6.809e-13 Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 0 Query: 17 GRGRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGFPPRYHTRNNKFSSESKPSKDSEHQGV------------ISKEDYQHLLILWQQSKKDDQ---ASKNSTVD--NLIISGIFNPGDVGDYVIGEGVWMRGRMEM 135 G G G+G MLCT C+K NHT+D ++KHGFP Y RNN+F++ S P+ DS++ + +SKE YQ L+ L SK D A+KNS D NLI+S I N V +++ +W+ ME+ Sbjct: 113 GCGCGRGQPHPSMLCTHCHKNNHTVDTCYYKHGFPSGY--RNNQFANSSSPN-DSKNPSLSQPLQQPDSNNHLSKEYYQILINLLHHSKSDSATFFATKNSISDQSNLIVSSISNTSFVSNHL---SIWI---MEL 239
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396GD37|A0A396GD37_MEDTR (Putative RNA-directed DNA polymerase OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0334511 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.428e-12 Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 0 Query: 16 FGRGRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGFPPRYHTRN---------NKFSSESKP-----------SKDSEHQGVISKEDYQHLLILWQQSKKDDQASKNSTVD 105 GRGRGKG KT MLC+ CNKTNHT++N +FKHGFPP Y +RN N E KP S +++ +S+ +YQ+L+ L + K + K+ T D Sbjct: 109 LGRGRGKG-PKTSMLCSNCNKTNHTVENCYFKHGFPPGYRSRNQLDAMKSSFNNGGQEPKPTPHPNNNRSVDSNTADNNLPLSRTEYQYLINLLKSFKLESSTGKSITND 217
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3DZN3|A0A1S3DZN3_CICAR (uncharacterized protein LOC105851674 OS=Cicer arietinum OX=3827 GN=LOC105851674 PE=4 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.647e-11 Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 0 Query: 19 GRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGFPPRY---------HTRNNKFSSESKPSKDSEHQGVISKEDYQHLLILWQQSKKDDQAS 99 GRG+G + M CT C+K NHT+D +FKHGFPP Y T ++K S S+P + S+ ++KEDYQ L+ L SK D S Sbjct: 181 GRGRGQLRLSMFCTHCHKNNHTVDTCYFKHGFPPGYCKNQFANLSSTNDSKNSFLSQPPQLSDSNNRLNKEDYQILINLLHHSKSDAATS 270
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2Y1N6|A0A1S2Y1N6_CICAR (uncharacterized protein LOC101506742 OS=Cicer arietinum OX=3827 GN=LOC101506742 PE=4 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 8.066e-11 Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 0 Query: 17 GRGRGKGNSKTHMLCTKCNKTNHTIDNFHFKHGFPPRYHTRNNKFS-SESKPSKDSEHQGV---------ISKEDYQHLLILWQQSKKD 95 RGRG+G SK M CT C+KTNHT++ +FKHGFPP Y + S S+S + + H + +SKED++ L+ L SK+D Sbjct: 211 ARGRGRGPSKNQMFCTNCDKTNHTMETCYFKHGFPPGYRSHKPSTSNSDSANNNKTVHSAISTPGDLSTQLSKEDFKLLINLLHSSKQD 299 The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL) Total hits: 4
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Tiffany.R1.1g323720.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11) Total hits: 0
InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Tiffany.R1.1g323720.1_tif_v1 ID=Vfaba.Tiffany.R1.1g323720.1_tif_v1; Name=Vfaba.Tiffany.R1.1g323720.1; organism=Vicia faba; type=mRNA; length=453bpback to top protein sequence of Vfaba.Tiffany.R1.1g323720.1_tif_v1 >Vfaba.Tiffany.R1.1g323720.1_tif_v1 ID=Vfaba.Tiffany.R1.1g323720.1_tif_v1; Name=Vfaba.Tiffany.R1.1g323720.1_tif_v1; organism=Vicia faba; type=polypeptide; length=150bpback to top mRNA from alignment at chr1L:1286623258..1286628256+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Tiffany.R1.1g323720.1_tif_v1 ID=Vfaba.Tiffany.R1.1g323720.1_tif_v1; Name=Vfaba.Tiffany.R1.1g323720.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr1L:1286623258..1286628256+ (Vicia fababack to top |