Vfaba.Tiffany.R1.2g144280.1

Transcript Overview
NameVfaba.Tiffany.R1.2g144280.1
Unique NameVfaba.Tiffany.R1.2g144280.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length327
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr2chromosomechr2:1134598693..1134599019 +Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR223Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifzwsR237Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifL287Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL400Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crtifL055Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crtifL331Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
tiftifR149Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifL487Pisum sativum Cameor genome v1aPisum sativum
pstifL502Pisum sativum Cameor genome v1aPisum sativum
pstifL569Pisum sativum Cameor genome v1aPisum sativum
tifvfhR144Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhR159Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifL341Cicer arietinum ICC 4958 genome v2Cicer arietinum
caitifL552Cicer arietinum ICC 4958 genome v2Cicer arietinum
tifvssR233Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvssR268Vicia sativa cv. Studenica genome v1.0Vicia sativa

Orthologs
Gene/TranscriptAssemblySpecies
Psat05G0116400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg55255.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_08358.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cr_02923.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_01686Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.2g178440.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g144280Vfaba.Tiffany.R1.2g144280_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g144280.1_tif_v1-exonVfaba.Tiffany.R1.2g144280.1_tif_v1-exon-chr2_tif_v1:1134598693..1134599019Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g144280.1_tif_v1-cdsVfaba.Tiffany.R1.2g144280.1_tif_v1-cds-chr2_tif_v1:1134598693..1134599019Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.2g144280.1_tif_v1Vfaba.Tiffany.R1.2g144280.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.2g144280.1_tif_v1Vfaba.Tiffany.R1.2g144280.1_tif_v1-proteinVicia fabapolypeptide


Homology
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BLAST of Vfaba.Tiffany.R1.2g144280.1 vs. UniProtKB/TrEMBL
Match: tr|G7J961|G7J961_MEDTR (Putative pectinesterase inhibitor domain-containing protein OS=Medicago truncatula OX=3880 GN=MTR_3g105560 PE=4 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.637e-42
Identity = 74/106 (69.81%), Postives = 83/106 (78.30%), Query Frame = 0 
Query:    2 ETNIGDLEHQYQQQDQDAIITTIAELTYAKEFMDFIPKLKTLATINGGLSDQVVQCVEGLSNAMNNVLTEVEKLENYLPSVSWGTNTLQNVVDVVLTYNAICGYAF 107
            E NIG+LE    QQ QDAIITT+AEL YAKEFM+FIPKLKTLA +N     QV QCV GL+ AMNNVL EVEK+EN  PS+SWGT TLQNV+DVVLTYN IC +A 
Sbjct:   36 EDNIGELE----QQAQDAIITTVAELKYAKEFMEFIPKLKTLANLNDEQGTQVDQCVGGLTTAMNNVLMEVEKMENSWPSMSWGTETLQNVMDVVLTYNVICDHAL 137
[Close]
BLAST of Vfaba.Tiffany.R1.2g144280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3MPU9|A0A2K3MPU9_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g015991 PE=4 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.121e-30
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 0 
Query:   20 IITTIAELTYAKEFMDFIPKLKTLATINGGLSDQVVQCVEGLSNAMNNVLTEVEKLENYLPSVSWGTNTLQNVVDVVLTYNAICGYAF 107
            + TT AEL YAKEF+DFIPKLKT+A I G   DQV QCV GL+NA+N +L E+EK+EN  PSVSWGT  L + + VVLTY AIC +A 
Sbjct:    1 MFTTDAELKYAKEFIDFIPKLKTIAKIKG---DQVDQCVGGLTNALNTILNEIEKMENSWPSVSWGTKPLHDGLHVVLTYKAICDHAL 85
[Close]
BLAST of Vfaba.Tiffany.R1.2g144280.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5P924|A0A6A5P924_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001928 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.473e-15
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 0 
Query:   17 QDAIITTIAELTYAKEFMDFIPKLKTLATINGGLSDQVVQCVEGLSNAMNNVLTEVEKLE--NYLPSVSWGTNTLQNVVDVVLTYNAICGYAF 107
            QDAI  TI E+ +AK F+D IP LK+L  + G   +QV+QCV GLS+AMNNVL E+ KL+       +  GT  L+++V+ V++++ +C +A 
Sbjct:   41 QDAISITICEVNHAKAFIDSIPNLKSLGYVEGVNGNQVLQCVGGLSDAMNNVLNELNKLQQLGVGSPIYGGTRVLESMVNGVVSFSNMCHHAL 133
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.2g144280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
tr|G7J961|G7J961_MEDTR5.637e-4269.81Putative pectinesterase inhibitor domain-containin... [more]
tr|A0A2K3MPU9|A0A2K3MPU9_TRIPR2.121e-3062.50Uncharacterized protein OS=Trifolium pratense OX=5... [more]
tr|A0A6A5P924|A0A6A5P924_LUPAL1.473e-1544.09Uncharacterized protein OS=Lupinus albus OX=3870 G... [more]
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BLAST of Vfaba.Tiffany.R1.2g144280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Tiffany.R1.2g144280.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.2g144280.1_tif_v1 ID=Vfaba.Tiffany.R1.2g144280.1_tif_v1; Name=Vfaba.Tiffany.R1.2g144280.1; organism=Vicia faba; type=mRNA; length=327bp
ATGGAAACCAATATTGGAGACCTAGAACATCAATACCAACAACAAGATCA
AGATGCAATAATCACAACCATTGCTGAACTAACTTATGCTAAAGAATTTA
TGGATTTTATTCCAAAATTAAAAACTTTAGCTACTATAAACGGTGGACTT
AGTGACCAAGTTGTTCAATGTGTTGAAGGGTTGTCTAATGCAATGAACAA
TGTTCTTACGGAAGTTGAAAAACTGGAAAATTATTTGCCTTCTGTGTCTT
GGGGAACAAACACATTGCAAAATGTAGTGGATGTTGTGTTAACTTATAAT
GCTATATGTGGTTATGCTTTTGTTTGA
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protein sequence of Vfaba.Tiffany.R1.2g144280.1_tif_v1

>Vfaba.Tiffany.R1.2g144280.1_tif_v1 ID=Vfaba.Tiffany.R1.2g144280.1_tif_v1; Name=Vfaba.Tiffany.R1.2g144280.1_tif_v1; organism=Vicia faba; type=polypeptide; length=108bp
METNIGDLEHQYQQQDQDAIITTIAELTYAKEFMDFIPKLKTLATINGGL
SDQVVQCVEGLSNAMNNVLTEVEKLENYLPSVSWGTNTLQNVVDVVLTYN
AICGYAFV
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mRNA from alignment at chr2:1134598693..1134599019+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.2g144280.1_tif_v1 ID=Vfaba.Tiffany.R1.2g144280.1_tif_v1; Name=Vfaba.Tiffany.R1.2g144280.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:1134598693..1134599019+ (Vicia faba
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