Vfaba.Tiffany.R1.3g154200.1

Transcript Overview
NameVfaba.Tiffany.R1.3g154200.1
Unique NameVfaba.Tiffany.R1.3g154200.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length309
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:1223485648..1223486340 -Vicia faba cv. Tiffany genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
tifzwsR316Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifL292Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL321Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
catifL420Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cctifL0598Cajanus cajan Asha genome v1.0Cajanus cajan
crtifL391Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crtifL537Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cctifL0988Cajanus cajan Asha genome v1.0Cajanus cajan
tiftifL151Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifL031Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvtifL034Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvtifL048Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pstifL639Pisum sativum Cameor genome v1aPisum sativum
pvtifL842Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvfhR217Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvfhR220Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuR457Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
tifvuR464Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caitifL439Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0342Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caitifL596Cicer arietinum ICC 4958 genome v2Cicer arietinum
antifL0761Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
tifvssR375Vicia sativa cv. Studenica genome v1.0Vicia sativa
tifvuaR403Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
tifvssR391Vicia sativa cv. Studenica genome v1.0Vicia sativa
cantifL233Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL265Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cantifL361Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.3g154200Vfaba.Tiffany.R1.3g154200_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.3g154200.1_tif_v1-exonVfaba.Tiffany.R1.3g154200.1_tif_v1-exon-chr3_tif_v1:1223485648..1223485851Vicia fabaexon
Vfaba.Tiffany.R1.3g154200.1_tif_v1-exonVfaba.Tiffany.R1.3g154200.1_tif_v1-exon-chr3_tif_v1:1223486130..1223486175Vicia fabaexon
Vfaba.Tiffany.R1.3g154200.1_tif_v1-exonVfaba.Tiffany.R1.3g154200.1_tif_v1-exon-chr3_tif_v1:1223486282..1223486340Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.3g154200.1_tif_v1-cdsVfaba.Tiffany.R1.3g154200.1_tif_v1-cds-chr3_tif_v1:1223485648..1223485851Vicia fabaCDS
Vfaba.Tiffany.R1.3g154200.1_tif_v1-cdsVfaba.Tiffany.R1.3g154200.1_tif_v1-cds-chr3_tif_v1:1223486130..1223486175Vicia fabaCDS
Vfaba.Tiffany.R1.3g154200.1_tif_v1-cdsVfaba.Tiffany.R1.3g154200.1_tif_v1-cds-chr3_tif_v1:1223486282..1223486340Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.3g154200.1_tif_v1Vfaba.Tiffany.R1.3g154200.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.3g154200.1_tif_v1Vfaba.Tiffany.R1.3g154200.1_tif_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0A0L6Y8|A0A0A0L6Y8_CUCSA (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_3G117430 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.080e-24
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGGGGPQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1GEY3|A0A6J1GEY3_CUCMO (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111453574 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.656e-23
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGGG PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1IH25|A0A6J1IH25_CUCMA (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111472887 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.656e-23
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGGG PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1CXG1|A0A6J1CXG1_MOMCH (Protein transport protein Sec61 subunit beta OS=Momordica charantia OX=3673 GN=LOC111015719 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-22
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGG  PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1J088|A0A6J1J088_CUCMA (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111480059 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-22
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGG  PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1EFZ9|A0A6J1EFZ9_CUCMO (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111432170 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-22
Identity = 46/59 (77.97%), Postives = 49/59 (83.05%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGG  PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGAAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3AUY8|A0A1S3AUY8_CUCME (Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC103483120 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.788e-21
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGGG PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGG-PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 58
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5D3DB05|A0A5D3DB05_CUCME (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00420 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.788e-21
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGGG PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGG-PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 58
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P3ZBF1|A0A6P3ZBF1_ZIZJJ (Protein transport protein Sec61 subunit beta OS=Ziziphus jujuba OX=326968 GN=LOC107412522 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 9.026e-21
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0 
Query:   41 GGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            GG PQRGSAAATASMRRR+T  G  SGGAAGTMLQFYTDDAPGL+ISP  V I S
Sbjct:    4 GGAPQRGSAAATASMRRRRTTSGATSGGAAGTMLQFYTDDAPGLKISPNVVLIMS 58
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YHI6|A0A1S2YHI6_CICAR (Protein transport protein Sec61 subunit beta OS=Cicer arietinum OX=3827 GN=LOC101494504 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.164e-18
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0 
Query:   37 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGL+ISP  V + S
Sbjct:    1 MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/Swiss-Prot
Match: sp|P38389|SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.009e-14
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:   39 LGGGGPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            +G G PQRGSAAATASMRRRK      GGGASGGAAG+MLQFYTDDAPGL+ISP  V I S
Sbjct:    2 VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMS 62
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. Araport11
Match: AT3G60540.3 (| Preprotein translocase Sec%2C Sec61-beta subunit protein | Chr3:22375132-22375377 REVERSE LENGTH=81 | 201606)

HSP 1 Score: 70.4774 bits (171), Expect = 2.429e-17
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 
Query:   39 LGGGGPQRGSAAATASMRRRK-TAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            +GGG PQRGSAAATASMRRRK   G  ++GG AGTMLQFYTDDAPGL+ISP  V I S
Sbjct:    2 VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. Araport11
Match: AT3G60540.2 (| Preprotein translocase Sec%2C Sec61-beta subunit protein | Chr3:22375132-22375377 REVERSE LENGTH=81 | 201606)

HSP 1 Score: 70.4774 bits (171), Expect = 2.429e-17
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 
Query:   39 LGGGGPQRGSAAATASMRRRK-TAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            +GGG PQRGSAAATASMRRRK   G  ++GG AGTMLQFYTDDAPGL+ISP  V I S
Sbjct:    2 VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. Araport11
Match: AT3G60540.1 (| Preprotein translocase Sec%2C Sec61-beta subunit protein | Chr3:22375132-22375377 REVERSE LENGTH=81 | 201606)

HSP 1 Score: 70.4774 bits (171), Expect = 2.429e-17
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 
Query:   39 LGGGGPQRGSAAATASMRRRK-TAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            +GGG PQRGSAAATASMRRRK   G  ++GG AGTMLQFYTDDAPGL+ISP  V I S
Sbjct:    2 VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMS 59
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. Araport11
Match: AT2G45070.4 (| Preprotein translocase Sec%2C Sec61-beta subunit protein | Chr2:18587208-18587456 REVERSE LENGTH=82 | 201606)

HSP 1 Score: 65.855 bits (159), Expect = 2.055e-15
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:   39 LGGGGPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            +G G PQRGSAAATASMRRRK      GGGASGGAAG+MLQFYTDDAPGL+ISP  V I S
Sbjct:    2 VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMS 62
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. Araport11
Match: AT2G45070.3 (| Preprotein translocase Sec%2C Sec61-beta subunit protein | Chr2:18587208-18587456 REVERSE LENGTH=82 | 201606)

HSP 1 Score: 65.855 bits (159), Expect = 2.055e-15
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:   39 LGGGGPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            +G G PQRGSAAATASMRRRK      GGGASGGAAG+MLQFYTDDAPGL+ISP  V I S
Sbjct:    2 VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMS 62
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. Araport11
Match: AT2G45070.2 (| Preprotein translocase Sec%2C Sec61-beta subunit protein | Chr2:18587208-18587456 REVERSE LENGTH=82 | 201606)

HSP 1 Score: 65.855 bits (159), Expect = 2.055e-15
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:   39 LGGGGPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            +G G PQRGSAAATASMRRRK      GGGASGGAAG+MLQFYTDDAPGL+ISP  V I S
Sbjct:    2 VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMS 62
[Close]
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. Araport11
Match: AT2G45070.1 (| Preprotein translocase Sec%2C Sec61-beta subunit protein | Chr2:18587208-18587456 REVERSE LENGTH=82 | 201606)

HSP 1 Score: 65.855 bits (159), Expect = 2.055e-15
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0 
Query:   39 LGGGGPQRGSAAATASMRRRK----TAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISS 95
            +G G PQRGSAAATASMRRRK      GGGASGGAAG+MLQFYTDDAPGL+ISP  V I S
Sbjct:    2 VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIMS 62
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A0A0L6Y8|A0A0A0L6Y8_CUCSA7.080e-2481.36Protein transport protein Sec61 subunit beta OS=Cu... [more]
tr|A0A6J1GEY3|A0A6J1GEY3_CUCMO3.656e-2379.66Protein transport protein Sec61 subunit beta OS=Cu... [more]
tr|A0A6J1IH25|A0A6J1IH25_CUCMA3.656e-2379.66Protein transport protein Sec61 subunit beta OS=Cu... [more]
tr|A0A6J1CXG1|A0A6J1CXG1_MOMCH1.602e-2277.97Protein transport protein Sec61 subunit beta OS=Mo... [more]
tr|A0A6J1J088|A0A6J1J088_CUCMA1.602e-2277.97Protein transport protein Sec61 subunit beta OS=Cu... [more]
tr|A0A6J1EFZ9|A0A6J1EFZ9_CUCMO1.602e-2277.97Protein transport protein Sec61 subunit beta OS=Cu... [more]
tr|A0A1S3AUY8|A0A1S3AUY8_CUCME1.788e-2179.66Protein transport protein Sec61 subunit beta OS=Cu... [more]
tr|A0A5D3DB05|A0A5D3DB05_CUCME1.788e-2179.66Protein transport protein Sec61 subunit beta OS=Cu... [more]
tr|A0A6P3ZBF1|A0A6P3ZBF1_ZIZJJ9.026e-2180.00Protein transport protein Sec61 subunit beta OS=Zi... [more]
tr|A0A1S2YHI6|A0A1S2YHI6_CICAR1.164e-1889.83Protein transport protein Sec61 subunit beta OS=Ci... [more]
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BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
sp|P38389|SC61B_ARATH2.009e-1475.41Protein transport protein Sec61 subunit beta OS=Ar... [more]
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BLAST of Vfaba.Tiffany.R1.3g154200.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 7
Match NameE-valueIdentityDescription
AT3G60540.32.429e-1774.14| Preprotein translocase Sec%2C Sec61-beta subunit... [more]
AT3G60540.22.429e-1774.14| Preprotein translocase Sec%2C Sec61-beta subunit... [more]
AT3G60540.12.429e-1774.14| Preprotein translocase Sec%2C Sec61-beta subunit... [more]
AT2G45070.42.055e-1575.41| Preprotein translocase Sec%2C Sec61-beta subunit... [more]
AT2G45070.32.055e-1575.41| Preprotein translocase Sec%2C Sec61-beta subunit... [more]
AT2G45070.22.055e-1575.41| Preprotein translocase Sec%2C Sec61-beta subunit... [more]
AT2G45070.12.055e-1575.41| Preprotein translocase Sec%2C Sec61-beta subunit... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..66
IPR030671Protein transport Sec61-beta/SbhPANTHERPTHR13509SEC61 SUBUNIT BETAcoord: 45..95

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.3g154200.1_tif_v1 ID=Vfaba.Tiffany.R1.3g154200.1_tif_v1; Name=Vfaba.Tiffany.R1.3g154200.1; organism=Vicia faba; type=mRNA; length=309bp
ATGATTACATGGCAAATCCTTATTGGTCACATTCGCGTGGACAAACATCA
CAAATCCAAATCACCGGCGCCGTTGATTCTCATAACCGGAATTCCCCATT
TTCAGAAAATGGCTTTAGGTGGAGGAGGTCCCCAAAGAGGAAGTGCAGCT
GCTACTGCAAGCATGAGGAGAAGGAAAACAGCAGGTGGTGGAGCCTCTGG
AGGAGCAGCTGGAACTATGCTTCAATTTTACACCGATGATGCTCCTGGAC
TCAGAATCTCTCCTAGATCAGTAAAAATATCCTCCCCACACGTGGACCAA
AACTTTTGA
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protein sequence of Vfaba.Tiffany.R1.3g154200.1_tif_v1

>Vfaba.Tiffany.R1.3g154200.1_tif_v1 ID=Vfaba.Tiffany.R1.3g154200.1_tif_v1; Name=Vfaba.Tiffany.R1.3g154200.1_tif_v1; organism=Vicia faba; type=polypeptide; length=102bp
MITWQILIGHIRVDKHHKSKSPAPLILITGIPHFQKMALGGGGPQRGSAA
ATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLRISPRSVKISSPHVDQ
NF
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mRNA from alignment at chr3:1223485648..1223486340-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.3g154200.1_tif_v1 ID=Vfaba.Tiffany.R1.3g154200.1_tif_v1; Name=Vfaba.Tiffany.R1.3g154200.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr3:1223485648..1223486340- (Vicia faba
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR030671Sec61-beta/Sbh
Vocabulary: Cellular Component
TermDefinition
GO:0005784Sec61 translocon complex
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport