Vfaba.Tiffany.R1.5g114080.1

Transcript Overview
NameVfaba.Tiffany.R1.5g114080.1
Unique NameVfaba.Tiffany.R1.5g114080.1_tif_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length375
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:1015341897..1015344028 +Vicia faba cv. Tiffany genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g114080Vfaba.Tiffany.R1.5g114080_tif_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g114080.1_tif_v1-exonVfaba.Tiffany.R1.5g114080.1_tif_v1-exon-chr5_tif_v1:1015341897..1015342040Vicia fabaexon
Vfaba.Tiffany.R1.5g114080.1_tif_v1-exonVfaba.Tiffany.R1.5g114080.1_tif_v1-exon-chr5_tif_v1:1015342133..1015342243Vicia fabaexon
Vfaba.Tiffany.R1.5g114080.1_tif_v1-exonVfaba.Tiffany.R1.5g114080.1_tif_v1-exon-chr5_tif_v1:1015343431..1015343499Vicia fabaexon
Vfaba.Tiffany.R1.5g114080.1_tif_v1-exonVfaba.Tiffany.R1.5g114080.1_tif_v1-exon-chr5_tif_v1:1015343978..1015344028Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g114080.1_tif_v1-cdsVfaba.Tiffany.R1.5g114080.1_tif_v1-cds-chr5_tif_v1:1015341897..1015342040Vicia fabaCDS
Vfaba.Tiffany.R1.5g114080.1_tif_v1-cdsVfaba.Tiffany.R1.5g114080.1_tif_v1-cds-chr5_tif_v1:1015342133..1015342243Vicia fabaCDS
Vfaba.Tiffany.R1.5g114080.1_tif_v1-cdsVfaba.Tiffany.R1.5g114080.1_tif_v1-cds-chr5_tif_v1:1015343431..1015343499Vicia fabaCDS
Vfaba.Tiffany.R1.5g114080.1_tif_v1-cdsVfaba.Tiffany.R1.5g114080.1_tif_v1-cds-chr5_tif_v1:1015343978..1015344028Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Tiffany.R1.5g114080.1_tif_v1Vfaba.Tiffany.R1.5g114080.1_tif_v1Vicia fabapolypeptide
Vfaba.Tiffany.R1.5g114080.1_tif_v1Vfaba.Tiffany.R1.5g114080.1_tif_v1-proteinVicia fabapolypeptide


Homology
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XT33|A0A1S2XT33_CICAR (uncharacterized protein LOC101506721 isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101506721 PE=4 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.961e-72
Identity = 100/122 (81.97%), Postives = 115/122 (94.26%), Query Frame = 0 
Query:    3 KNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
            K ++F+ DVPWR +SSS+KP+PKIHHSPILRVSHTP SDYAISIM+HPDPIG+GLGD AIVEAAGPEC++PGQ  P++LLGLKVWPI++DLKFLEPVGRELKA+GKFMDDAVELMNKSFIDR
Sbjct:    5 KGSTFEKDVPWRATSSSVKPIPKIHHSPILRVSHTPFSDYAISIMKHPDPIGDGLGDEAIVEAAGPECIIPGQITPVRLLGLKVWPIDIDLKFLEPVGRELKAMGKFMDDAVELMNKSFIDR 126
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151TVK2|A0A151TVK2_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_010257 PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.638e-71
Identity = 103/122 (84.43%), Postives = 112/122 (91.80%), Query Frame = 0 
Query:    3 KNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
            K  SFQ DVPWR SSSSLKP PKIHHSP+LRVSH+PLSDYA+S+MRHPDPIGNGLGD AIVEAAGP+C+VPGQ  P+KLLGL+VWPI VDLKFLEPVGRELK LGKFMDDAVELMNKSFI+R
Sbjct:    4 KGGSFQKDVPWRASSSSLKPFPKIHHSPLLRVSHSPLSDYAVSVMRHPDPIGNGLGDEAIVEAAGPDCIVPGQKVPLKLLGLQVWPIHVDLKFLEPVGRELKLLGKFMDDAVELMNKSFIER 125
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A072U3U4|A0A072U3U4_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=25499337 PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.211e-71
Identity = 106/124 (85.48%), Postives = 113/124 (91.13%), Query Frame = 0 
Query:    1 MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
            MSK +SFQ+DVPWR SSSS KP+PKIHHSPILRVS  P SDYAISIMRHPDPIG+GLGD AIVEAAGPEC++PGQ  PIKLLGLKVWPIEVDLKFLEP+GRELK LGK MDDAVELMNKSFIDR
Sbjct:    1 MSK-SSFQNDVPWRASSSSTKPIPKIHHSPILRVSQNPFSDYAISIMRHPDPIGDGLGDDAIVEAAGPECIIPGQVTPIKLLGLKVWPIEVDLKFLEPIGRELKQLGKVMDDAVELMNKSFIDR 123
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|V7CZG3|V7CZG3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G180700g PE=4 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.236e-68
Identity = 98/121 (80.99%), Postives = 111/121 (91.74%), Query Frame = 0 
Query:    4 NTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
              SFQ DVPWR SSS++KP+PKIHHSP+LRVS TP++DYA+S+MRHPDPIG+GLGD AIVEAAGP+CLVPGQ  PI+LLGL+VWPI VDLKFLEPVGRELK LGKFMDDAVELMNKSFI+R
Sbjct:    8 GASFQKDVPWRASSSTVKPIPKIHHSPLLRVSQTPVTDYAVSVMRHPDPIGSGLGDDAIVEAAGPDCLVPGQKMPIQLLGLQVWPIHVDLKFLEPVGRELKMLGKFMDDAVELMNKSFIER 128
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MVH1|A0A2Z6MVH1_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_338190 PE=4 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.397e-68
Identity = 103/124 (83.06%), Postives = 109/124 (87.90%), Query Frame = 0 
Query:    1 MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
            MSKN SFQ DVPWR S S  KP+PKIH SPILRVSHTP S+YAI  MR+ DPIGNGLGD AIVEAAGPEC++PGQ  PIKLLGLKVWPI+VDLKFLEPVGRELK LGKFMDDAVELMNKSFIDR
Sbjct:    1 MSKNASFQQDVPWRASPSG-KPIPKIHQSPILRVSHTPFSEYAIFTMRNSDPIGNGLGDEAIVEAAGPECIIPGQMTPIKLLGLKVWPIDVDLKFLEPVGRELKVLGKFMDDAVELMNKSFIDR 123
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TQL5|A0A1S3TQL5_VIGRR (uncharacterized protein LOC106757773 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757773 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.414e-68
Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 0 
Query:    4 NTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
              SFQ DVPWR SSS+ KP PKIHHSP+LRVS TP +DYA+S+MRHPDPIG+GLGD AIVEAAGP+CLVPGQ  P++LLGL+VWPI VDLKFLEPVGRELK LGKFMDDAVELMNKSFI+R
Sbjct:    8 GASFQKDVPWRASSSTAKPFPKIHHSPLLRVSQTPFTDYAVSVMRHPDPIGSGLGDEAIVEAAGPDCLVPGQKMPLQLLGLQVWPIHVDLKFLEPVGRELKMLGKFMDDAVELMNKSFIER 128
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445LE03|A0A445LE03_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_007556 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.824e-68
Identity = 100/124 (80.65%), Postives = 109/124 (87.90%), Query Frame = 0 
Query:    1 MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
            MSK  S Q DVPWR SSSS KP+P+IHHSP+LRVS TP+SDY IS+MRHPDPIG GLGD AIVE AGP+CLVPGQ  PI+LLGL+VWPI VDLKFLEPVGRELK LGKFMDDAVELMNKSFI+R
Sbjct:    1 MSKGGSLQKDVPWRASSSSAKPIPRIHHSPLLRVSRTPVSDYGISVMRHPDPIGGGLGDEAIVEPAGPDCLVPGQKMPIQLLGLQVWPIHVDLKFLEPVGRELKMLGKFMDDAVELMNKSFIER 124
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445FID6|A0A445FID6_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_051886 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.461e-67
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 0 
Query:    1 MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
            MSK  S Q DVPWR SSSS KP+PKIHHSP+LRVS TP+SDY IS+MRHPDPIG GLG  AIVE AGP+CLVPGQ  PI+LLGL+VWPI VDLKFLEPVGRELK LGKFMDDAVELMNKSFI+R
Sbjct:    1 MSKGGSLQKDVPWRASSSSAKPIPKIHHSPLLRVSQTPVSDYGISVMRHPDPIGGGLGHEAIVEPAGPDCLVPGQKMPIQLLGLQVWPIHVDLKFLEPVGRELKMLGKFMDDAVELMNKSFIER 124
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|I1NAC7|I1NAC7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100819290 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.461e-67
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 0 
Query:    1 MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
            MSK  S Q DVPWR SSSS KP+PKIHHSP+LRVS TP+SDY IS+MRHPDPIG GLG  AIVE AGP+CLVPGQ  PI+LLGL+VWPI VDLKFLEPVGRELK LGKFMDDAVELMNKSFI+R
Sbjct:    1 MSKGGSLQKDVPWRASSSSAKPIPKIHHSPLLRVSQTPVSDYGISVMRHPDPIGGGLGHEAIVEPAGPDCLVPGQKMPIQLLGLQVWPIHVDLKFLEPVGRELKMLGKFMDDAVELMNKSFIER 124
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Match: tr|I1JPR4|I1JPR4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100798836 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.169e-67
Identity = 99/124 (79.84%), Postives = 108/124 (87.10%), Query Frame = 0 
Query:    1 MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
            MSK  S Q DVPWR SSSS KP+P+IHHSP+LRVS TP+SDY IS+MRHPDPIG GLGD A VE AGP+CLVPGQ  PI+LLGL+VWPI VDLKFLEPVGRELK LGKFMDDAVELMNKSFI+R
Sbjct:    1 MSKGGSLQKDVPWRASSSSAKPIPRIHHSPLLRVSRTPVSDYGISVMRHPDPIGGGLGDEATVEPAGPDCLVPGQKMPIQLLGLQVWPIHVDLKFLEPVGRELKMLGKFMDDAVELMNKSFIER 124
[Close]
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. Araport11
Match: AT2G36835.1 (| hypothetical protein | Chr2:15449839-15451307 REVERSE LENGTH=124 | 201606)

HSP 1 Score: 175.252 bits (443), Expect = 8.487e-58
Identity = 78/121 (64.46%), Postives = 99/121 (81.82%), Query Frame = 0 
Query:    4 NTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKFMDDAVELMNKSFIDR 124
              +  +D PWRVSS   +P+PKI  SP+L +S  P +DYAIS+M+HP+P+G G    A++E+AGPEC+VPGQ  P++LLG+KVWP+EVDLKFLEPVG+ELK LGKFMD+AVELMNKSFIDR
Sbjct:    6 GATLAEDAPWRVSSG--RPVPKISRSPVLSISQNPETDYAISVMKHPNPVGGGFAMEAVLESAGPECVVPGQVTPLRLLGVKVWPVEVDLKFLEPVGKELKMLGKFMDNAVELMNKSFIDR 124
The following BLAST results are available for this feature:
BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XT33|A0A1S2XT33_CICAR6.961e-7281.97uncharacterized protein LOC101506721 isoform X2 OS... [more]
tr|A0A151TVK2|A0A151TVK2_CAJCA1.638e-7184.43Uncharacterized protein OS=Cajanus cajan OX=3821 G... [more]
tr|A0A072U3U4|A0A072U3U4_MEDTR4.211e-7185.48Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|V7CZG3|V7CZG3_PHAVU1.236e-6880.99Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A2Z6MVH1|A0A2Z6MVH1_TRISU1.397e-6883.06Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A1S3TQL5|A0A1S3TQL5_VIGRR4.414e-6880.17uncharacterized protein LOC106757773 OS=Vigna radi... [more]
tr|A0A445LE03|A0A445LE03_GLYSO4.824e-6880.65Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|A0A445FID6|A0A445FID6_GLYSO1.461e-6780.65Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|I1NAC7|I1NAC7_SOYBN1.461e-6780.65Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
tr|I1JPR4|I1JPR4_SOYBN2.169e-6779.84Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
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BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Tiffany.R1.5g114080.1 vs. Araport11
Analysis Date: 2023-05-10 (Blastp of Vicia faba cv. Tiffany genome v1.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G36835.18.487e-5864.46| hypothetical protein | Chr2:15449839-15451307 RE... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba cv. Tiffany genome v1.0 proteins
Date Performed: 2023-05-10
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36737EXPRESSED PROTEINcoord: 4..124

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Tiffany.R1.5g114080.1_tif_v1 ID=Vfaba.Tiffany.R1.5g114080.1_tif_v1; Name=Vfaba.Tiffany.R1.5g114080.1; organism=Vicia faba; type=mRNA; length=375bp
ATGTCGAAGAACACTTCCTTTCAAGACGACGTGCCATGGCGAGTTTCATC
ATCTTCACTGAAACCATTACCCAAAATTCACCACTCTCCTATTCTTCGCG
TTTCTCACACACCTCTCTCCGATTATGCAATTTCCATCATGAGGCATCCA
GACCCTATAGGGAATGGTTTGGGTGATGCAGCTATAGTGGAAGCAGCTGG
TCCTGAATGCTTAGTCCCTGGTCAAAGTGCTCCCATTAAACTACTTGGTC
TCAAGGTCTGGCCTATAGAAGTTGACTTGAAATTTTTGGAACCTGTCGGG
CGAGAACTTAAGGCGCTTGGGAAGTTCATGGACGATGCTGTGGAACTTAT
GAACAAATCATTCATAGATCGCTGA
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protein sequence of Vfaba.Tiffany.R1.5g114080.1_tif_v1

>Vfaba.Tiffany.R1.5g114080.1_tif_v1 ID=Vfaba.Tiffany.R1.5g114080.1_tif_v1; Name=Vfaba.Tiffany.R1.5g114080.1_tif_v1; organism=Vicia faba; type=polypeptide; length=124bp
MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHP
DPIGNGLGDAAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVG
RELKALGKFMDDAVELMNKSFIDR
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mRNA from alignment at chr5:1015341897..1015344028+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Tiffany.R1.5g114080.1_tif_v1 ID=Vfaba.Tiffany.R1.5g114080.1_tif_v1; Name=Vfaba.Tiffany.R1.5g114080.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1015341897..1015344028+ (Vicia faba
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