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Transcript Overview
Name | Psat5g021640.1 |
Unique Name | Psat5g021640.1_Ps_Cameor_v1a |
Type | mRNA |
Organism | Pisum sativum (pea) |
Sequence length | 1791 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Psat5g021640.1 | Psat5g021640.1_Ps_Cameor_v1a-protein | Pisum sativum | polypeptide |
Psat5g021640.1_Ps_Cameor_v1a | Psat5g021640.1_Ps_Cameor_v1a | Pisum sativum | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Psat5g021640.1.five_prime_utr1 | Psat5g021640.1.five_prime_utr1_Ps_Cameor_v1a | Pisum sativum | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Psat5g021640.1.exon1 | Psat5g021640.1.exon1_Ps_Cameor_v1a | Pisum sativum | exon |
Psat5g021640.1.exon2 | Psat5g021640.1.exon2_Ps_Cameor_v1a | Pisum sativum | exon |
Psat5g021640.1.exon3 | Psat5g021640.1.exon3_Ps_Cameor_v1a | Pisum sativum | exon |
Psat5g021640.1.exon4 | Psat5g021640.1.exon4_Ps_Cameor_v1a | Pisum sativum | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Psat5g021640.1.cds1 | Psat5g021640.1.cds1_Ps_Cameor_v1a | Pisum sativum | CDS |
Psat5g021640.1.cds2 | Psat5g021640.1.cds2_Ps_Cameor_v1a | Pisum sativum | CDS |
Psat5g021640.1.cds3 | Psat5g021640.1.cds3_Ps_Cameor_v1a | Pisum sativum | CDS |
Psat5g021640.1.cds4 | Psat5g021640.1.cds4_Ps_Cameor_v1a | Pisum sativum | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Psat5g021640.1.three_prime_utr1 | Psat5g021640.1.three_prime_utr1_Ps_Cameor_v1a | Pisum sativum | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 47..61 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..35 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..61 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 113..163 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 100..194 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat5g021640.1_Ps_Cameor_v1a ID=Psat5g021640.1_Ps_Cameor_v1a; Name=Psat5g021640.1; organism=Pisum sativum; type=mRNA; length=1791bp CTCCAGTGAAGATCAATCCAATTTCTCAAATTGCCCCTTCCAAGCCTAAG ATTACTGATTCTTCTTCCTCTCTCAATAAGAATCTCCCCAGCTCAAATAA GATGAAATCTGTCACCACTCTCACTAAATCTGAGGTATCATCAATTCAAT TTTGGGATTCAATTGTTATAATTAATATTTAATTATACTAATTAGGGTTT CTTAAATTATATATTTGTATCCTTTCTTGATAGTTAGGGTTCATAATTCT GTGAATTTTATGCTTTCTTGAGGGTTAGGGTTCATAATCATGCAACTGAA TTTTATGTTAGCAGATGTTAGATATAGTTAGATTTTGTTAATGATGGTGA TTATTTGGTTGCTATTAGTTGAGAATTAGTTAAGATGACAATTCTGTTTT GTATAAATTTGATAGGTTAAATCAAAGCTGACAACAATGTTGTCGTCATC ATCGAAAACAACGACGACTACGAAGACGACGAAGAGGAAAACTACTACCA CCAAAGTGAGAGAGAGGAAAGTCTATAATTTGCCTGGCCAGAAACACGAT CCACCTGAAGAGGTTCGTAATTTTTCACAATTTATTCCGGAAATTTACAA TTCGTTGTATGTATCGAGAGATCGAATCGGACTAATACAAGATGTTTGTT CATAATCGTACCTTGTGTTTGCAGAAAGAACCCTTGAGGATTTTCTATGA GTCGTTGTCGAAACAGATACCTACAAGTGAAATGGCGGAATTTTGGTGAG TTTTCTTCCAATTTTGGGGAAATTTTGGTGCAATGAATGTTCATAATTTA GGATCTAGCAATGGTTGATATCAGATTTTGTTCGAAATTGAAAATCGATA AAAAAAAAACTGTCGAAAATTGATATCAGATTATGGCGTTATTTATGGGT CTAGTTAGTAGAGTTGAGATTCTCAATGTTTCTTATCCAATGCAGGTTAA TGGAACATGGACTATTGTCTCTTGAAAGAGCTAAGAAAGCATTTGAGAAG AAGCAGAGAAAGCAAAAGGAGCTTCGAACAGGGACTCCGGCTAAGTCGTC GTCAAAGCCGCCGACAAAAACCGGAACTTCACAGAAGCCGCAACCGAGAC CAAATAATACTGGAACTTCACAGAAGCCGCAACCGAGACCAAATAATACT GGATCTTCACAGAAGCCGCAACAGAAATCAAATAATGGCGAAATTAAAGC AAAGAGAAAAATCGAGAGTGACAGTGATGATGACGACGACGACGATTTCA TTTTGAGTCATAAAAGAAGAAGAGTGTAAGAAGAAAAACCTCACAAATTT TATTTAATAAAGGTTATAAAAAGGAAAAGAAAAGATTTGTTGTAAGGTAA CTTGAACTGTAAGATTAAAATATTCTTCATGTGTCAAACTTTACTGATTC AACAAGGGACTTGCACTGTGTTGTTGTATGTGTCTTTTGCAAGCAACATT ATTAATGAAGATGGAGAGTGCTTTTACTCCATTACTTCTTCCCCTTGAGA TTGATTTTGGTCGAATATGATTCACAATACATAGTTATATGTTTGGTACT ATAATTAAAGGATAAAATTAGTTACTCATAGTAAGTTCGTCCAGCTGTGA TTGATGTTGGACTTTAGTAGGAAGGATCACAGTTCGATCTGAATCAGATA TCTGTGGTGTAAAAAAAATAAAATTGTAAAACTACTTTTCCAAGATGTGT TTATTAGCATTCCCTTGATCATGGTATAATTTCTTTAGTTAGTATAATAT CTTTAGTAATAAGCTTTATAAAGAGTAGGGATCAGCTCCCG back to topprotein sequence of Psat5g021640.1_Ps_Cameor_v1a >Psat5g021640.1_Ps_Cameor_v1a ID=Psat5g021640.1_Ps_Cameor_v1a; Name=Psat5g021640.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=195bp MKSVTTLTKSEVKSKLTTMLSSSSKTTTTTKTTKRKTTTTKVRERKVYNL PGQKHDPPEEKEPLRIFYESLSKQIPTSEMAEFWLMEHGLLSLERAKKAF EKKQRKQKELRTGTPAKSSSKPPTKTGTSQKPQPRPNNTGTSQKPQPRPN NTGSSQKPQQKSNNGEIKAKRKIESDSDDDDDDDFILSHKRRRV* back to topmRNA from alignment at chr5LG3:40785390..40787180- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Psat5g021640.1_Ps_Cameor_v1a ID=Psat5g021640.1_Ps_Cameor_v1a; Name=Psat5g021640.1; organism=Pisum sativum; type=mRNA; length=1791bp; location=Sequence derived from: chr5LG3:40785390..40787180- (Pisum sativum CTCCAGTGAAGATCAATCCAATTTCTCAAATTGCCCCTTCCAAGCCTAAG
ATTACTGATTCTTCTTCCTCTCTCAATAAGAATCTCCCCAGCTCAAATAA
GATGAAATCTGTCACCACTCTCACTAAATCTGAGGTATCATCAATTCAAT
TTTGGGATTCAATTGTTATAATTAATATTTAATTATACTAATTAGGGTTT
CTTAAATTATATATTTGTATCCTTTCTTGATAGTTAGGGTTCATAATTCT
GTGAATTTTATGCTTTCTTGAGGGTTAGGGTTCATAATCATGCAACTGAA
TTTTATGTTAGCAGATGTTAGATATAGTTAGATTTTGTTAATGATGGTGA
TTATTTGGTTGCTATTAGTTGAGAATTAGTTAAGATGACAATTCTGTTTT
GTATAAATTTGATAGGTTAAATCAAAGCTGACAACAATGTTGTCGTCATC
ATCGAAAACAACGACGACTACGAAGACGACGAAGAGGAAAACTACTACCA
CCAAAGTGAGAGAGAGGAAAGTCTATAATTTGCCTGGCCAGAAACACGAT
CCACCTGAAGAGGTTCGTAATTTTTCACAATTTATTCCGGAAATTTACAA
TTCGTTGTATGTATCGAGAGATCGAATCGGACTAATACAAGATGTTTGTT
CATAATCGTACCTTGTGTTTGCAGAAAGAACCCTTGAGGATTTTCTATGA
GTCGTTGTCGAAACAGATACCTACAAGTGAAATGGCGGAATTTTGGTGAG
TTTTCTTCCAATTTTGGGGAAATTTTGGTGCAATGAATGTTCATAATTTA
GGATCTAGCAATGGTTGATATCAGATTTTGTTCGAAATTGAAAATCGATA
AAAAAAAAACTGTCGAAAATTGATATCAGATTATGGCGTTATTTATGGGT
CTAGTTAGTAGAGTTGAGATTCTCAATGTTTCTTATCCAATGCAGGTTAA
TGGAACATGGACTATTGTCTCTTGAAAGAGCTAAGAAAGCATTTGAGAAG
AAGCAGAGAAAGCAAAAGGAGCTTCGAACAGGGACTCCGGCTAAGTCGTC
GTCAAAGCCGCCGACAAAAACCGGAACTTCACAGAAGCCGCAACCGAGAC
CAAATAATACTGGAACTTCACAGAAGCCGCAACCGAGACCAAATAATACT
GGATCTTCACAGAAGCCGCAACAGAAATCAAATAATGGCGAAATTAAAGC
AAAGAGAAAAATCGAGAGTGACAGTGATGATGACGACGACGACGATTTCA
TTTTGAGTCATAAAAGAAGAAGAGTGTAAGAAGAAAAACCTCACAAATTT
TATTTAATAAAGGTTATAAAAAGGAAAAGAAAAGATTTGTTGTAAGGTAA
CTTGAACTGTAAGATTAAAATATTCTTCATGTGTCAAACTTTACTGATTC
AACAAGGGACTTGCACTGTGTTGTTGTATGTGTCTTTTGCAAGCAACATT
ATTAATGAAGATGGAGAGTGCTTTTACTCCATTACTTCTTCCCCTTGAGA
TTGATTTTGGTCGAATATGATTCACAATACATAGTTATATGTTTGGTACT
ATAATTAAAGGATAAAATTAGTTACTCATAGTAAGTTCGTCCAGCTGTGA
TTGATGTTGGACTTTAGTAGGAAGGATCACAGTTCGATCTGAATCAGATA
TCTGTGGTGTAAAAAAAATAAAATTGTAAAACTACTTTTCCAAGATGTGT
TTATTAGCATTCCCTTGATCATGGTATAATTTCTTTAGTTAGTATAATAT
CTTTAGTAATAAGCTTTATAAAGAGTAGGGATCAGCTCCCG back to topCoding sequence (CDS) from alignment at chr5LG3:40785390..40787180- >Psat5g021640.1_Ps_Cameor_v1a ID=Psat5g021640.1_Ps_Cameor_v1a; Name=Psat5g021640.1; organism=Pisum sativum; type=CDS; length=1170bp; location=Sequence derived from: chr5LG3:40785390..40787180- (Pisum sativum ATGAAATCTGTCACCACTCTCACTAAATCTGAGATGAAATCTGTCACCAC TCTCACTAAATCTGAGGTTAAATCAAAGCTGACAACAATGTTGTCGTCAT CATCGAAAACAACGACGACTACGAAGACGACGAAGAGGAAAACTACTACC ACCAAAGTGAGAGAGAGGAAAGTCTATAATTTGCCTGGCCAGAAACACGA TCCACCTGAAGAGGTTAAATCAAAGCTGACAACAATGTTGTCGTCATCAT CGAAAACAACGACGACTACGAAGACGACGAAGAGGAAAACTACTACCACC AAAGTGAGAGAGAGGAAAGTCTATAATTTGCCTGGCCAGAAACACGATCC ACCTGAAGAGAAAGAACCCTTGAGGATTTTCTATGAGTCGTTGTCGAAAC AGATACCTACAAGTGAAATGGCGGAATTTTGAAAGAACCCTTGAGGATTT TCTATGAGTCGTTGTCGAAACAGATACCTACAAGTGAAATGGCGGAATTT TGGTTAATGGAACATGGACTATTGTCTCTTGAAAGAGCTAAGAAAGCATT TGAGAAGAAGCAGAGAAAGCAAAAGGAGCTTCGAACAGGGACTCCGGCTA AGTCGTCGTCAAAGCCGCCGACAAAAACCGGAACTTCACAGAAGCCGCAA CCGAGACCAAATAATACTGGAACTTCACAGAAGCCGCAACCGAGACCAAA TAATACTGGATCTTCACAGAAGCCGCAACAGAAATCAAATAATGGCGAAA TTAAAGCAAAGAGAAAAATCGAGAGTGACAGTGATGATGACGACGACGAC GATTTCATTTTGAGTCATAAAAGAAGAAGAGTGTAAGTTAATGGAACATG GACTATTGTCTCTTGAAAGAGCTAAGAAAGCATTTGAGAAGAAGCAGAGA AAGCAAAAGGAGCTTCGAACAGGGACTCCGGCTAAGTCGTCGTCAAAGCC GCCGACAAAAACCGGAACTTCACAGAAGCCGCAACCGAGACCAAATAATA CTGGAACTTCACAGAAGCCGCAACCGAGACCAAATAATACTGGATCTTCA CAGAAGCCGCAACAGAAATCAAATAATGGCGAAATTAAAGCAAAGAGAAA AATCGAGAGTGACAGTGATGATGACGACGACGACGATTTCATTTTGAGTC ATAAAAGAAGAAGAGTGTAA back to top
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